Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                ------>ZmHOX2a(2)                                                            --------->ARR11(3)                                                        <------MYB46(1)                                                        <------MYB83                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                      <---------WOX13(1)                                                    --------->ATHB12                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  --------->LBD16                             <------                                                 xxxxxxxxxxxxxxxx>smallRNA(s)            --------->ARR11(3)                                <----------DOF2  <---------ANAC58                  <---------ZAT6                               ------>ZmHOX2a(2) <---------ANAC46                <---------ANAC46                             --------->ARR11(3)  --------->ANAC55(2)             <---------ANAC58            --------->MYB52(2)<------ZmHOX2a(2)  <---------ANAC55(1)   <---------YAB1    <---------ARR11(3)     ------->GAMYB           <---------ARR11(3)  <---------ANAC58    --------------->AGL15<---------CCA1(1)    --------->MYB46(3)   <-----------GT1         <---------ANAC55(2) <---------------AGL15<---------RVE1(1)   --------->ANAC58--------->AHL20(2)           <---------LBD16    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ANAC58<---------AHL20(2)     <---------AHL20(2)<---------ARR11(3)   <---------ANAC58   gagacaaccaagattagttgtttaaattcacgatcttttcttagtttatttccgtgattggtgatctcttactatatttgttatcgtgttagatatttag  8582600                                <---------AHL20(2)                                <---------ICU4                             --------->YAB1                             <---------ICU4                            <---------YAB1                            --------->ICU4                           <---------AHL20(2)                           <---------AHL20(1)                         <---------YAB1                      --------->AHL20(2)                      --------->AHL20(1)                <---------AHL20(2)                    -------                      <---------AHL20(1)             --------->AHL20(1)                       -------                      <---------AHL20(2) <---------AHL20(2)                           <---------AHL20(2)                  <---------ICU4--------->ATHB51     <---------AHL20(1)              --------->AHL20(2)                  --------->YAB1--------->ATHB12  <---------AHL20(2)                 <---------AHL20(2)                  <--------HAHB4--------->AHL20(2)--------->AHL20(2)             --------->AHL20(1)                 --------->ICU4<---------YAB1 <---------AHL20(2)                 --------->AHL20(2) -                 <---------ATHB12   <---------AHL20(2)<---------AHL20(2)         <---------AHL20(2) <        <---------AHL20(2) --------->AHL20(2)--------->AHL20(1)           <---------AHL20(2)  <------        --------->AHL20(2)--------->YAB1--------->AHL20(2)               --------->AHL20(2)   <------ ---AHL20(2)     <---------YAB1--------->ICU4<---------AHL20(1)<---------ZAT6    <---------AHL20(1) <   ttgaatataaaaaaatgtaatcattttattataattatttgattttatatatttatatatttttagtgtaaatgattttatattttattaaatgtgatgt  8582700                                                  --------->AHL20(1)                                                  <---------AHL20(1)                                                  <---------AHL20(2)            <---------AHL20(1)                <---------AHL20(2)         xxxxxxxxxxxxxxxx>smallRNA(i)            <---------AHL20(2)                --------->AHL20(2)        --------->LBD16            --------->AHL20(1)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->AHL20(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       <---------YAB1   --------->AHL20(2)  --------->YAB1            <---------LBD16     ----------->GT1   --------->AHL20(2)   --------->TOE2(3)       --------->ARR14(2) <---------AHL20(2)    <---------AHL20(2) <---------TOE2(3)         <---------ARR14(2)            <-- -->bZIP60(1)    --------->YAB1          --------->AHL20(2) --------->LBD16                  -------- ---->GT1 <---------YAB1<---------AHL20(2)<---------YAB1   <---------ANAC46              ---------->DOF2 -------->AHL20(2)     <---------AHL20(1)--------->YAB1    <---------ANAC58        ----------->HVH21 ---------AHL20(2) <---------YAB1        <---------AHL20(2)<---------ANAC58 --------->ATHB12 <------- ---TGA2(1)--------->YAB1           <---------YAB1--------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---bZIP60(1)<---------YAB1         <---------AHL20(2)    ------>ZmHOX2a(2)----------->HVH21--------- ---------AHL20(1) <---------AHL20(2)  <---------YAB1<---------WOX13(1)xxxxxxxxxxxxxxxx>smallRNA(i)   aattaatttgttattatatttataatttttttaaaatttttattaatattaattaattgatccgtggtccaatccggatgactgggtgacccaaagatag  8582800                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                           ---------->DOF2       ----       <---------ARR14(2)                  --------->YAB1              <---------ANAC58          ---- <-----------HVH21                         ----------->GT1             <---------ANAC55(2)       ---- -------ZAT18    ----------->GT1  --------->MYB55(2)                   <---------ANAC46     --------- ->ARR11(3)    <-----------RAV1(2)<---------MYB46(3)                   <---------ANAC58     --------- --ARR11(3)  <-----------HVH21   --------->ALFIN1              <---------At4g35610          --------- >YAB1 --------->ARR14(2)        <---------AtMYB61            <---------TOE2(3)      <---------YAB1 <   tccggtcactatctgggtcaggtttaaaaacatcggtggtagcattggtaattcaagtctatttgaggtgatttcgtgaaagagattatttttctcgcaa  8582900     <---------MYB52(1) ------>NtERF2 ---->GAMYB ----->ANAC58 ----->ANAC58 ----->bZIP60(2) ----->ANAC46 ----->MYB46(3)                                                    --------->TOE2(3) >ANAC58             <------------------------ANAC81          <----------DOF2 >ANAC46             <-------GAMYB                     ------>ZmHOX2a(1)                 <--------P >ANAC58      <---------ICU4        <----------DOF2------>ZmHOX2a(1)            <---------GLK1(1) ---------ALFIN1    <-----------RAV1(1)  <---------CCA1(2)  *TSS   --------->TOE1(3)    <---------MYB52(1)   cgacaccgttttctagtcatttctgttgtacttctattctttcttatcttctccttcctctggtctttcccttaaaccctagaaatctctggtagtcaat  8583000                                                                             <---------AHL20(2)                                                                          --------->ARR14(2)                             --------->DOF5.7(2)                          <---------ARR14(2)                             <---------MYB52(1)                         --------->LBD16                        <---------ALFIN1                              <---------LBD16                        ------->GAMYB                                --------->MYB52(1)                        --------->AtMYB61                            ------>NtERF2                       <---------MYB55(2)                           <---------ALFIN1               --------->GLK1(2)                                    --------->ANAC46               <---------ARR11(3)                                  --------->MYB46(3)    <-----------GT1               --------->ARR14(2)                              <---------ARR14(2)      <---------AHL20(2)               <---------ARR14(2)                              ------>MYB46(1)     <---------AHL20(2)               --------->ARR11(3)       <---------ANAC58       ------>MYB83<---------RVE1(1)              <---------GLK1(2)         <---------ANAC58       --------->ARR14(2) <---------AHL20(2)    <---------YAB1     --------->MYB46(3)                 <-----------GT1 <---------GLK1(2)         -   tggtctatgaatgggagaatcttcaaccaccgttatccaattgcgcttcgtttgaaaaattcacctatccccaccggatttttttttattttttctcttc  8583100                                                                                     ---------->DOF2                                                                                  <<<<<<<<<ARR2                                                                                  <---------ATHB12                                                                          --------->ANAC46                   --------->At5g28300    <----------DOF2                ------->GAMYB                  ----------->GT1         --------->GLK1(1)             <---------MYB52(2)            <---------------AtSPL3       <---------ANAC58               --------->MYB46(3)           --------->YAB1                <---------ANAC58            <----------ID1--------->YAB1          <---------ATHB12       --------->ANAC58         <---------TOE2(3)     --------->WOX13(1) -------->ZAT14   <---------ZAT6 --------->ANAC58         <---------TOE1(3)    --------->MYB46(3)   tgtttactccgaatcatgtactgtaacttaacaagaagccaaggctttccaatggcgattagggtttcattacaacaaacaacaatcaaaagttgtctcc  8583200                                                    <---------ALFIN1                                                  --------->ANAC58                                                  --------->ANAC58                                         --------->TOE2(3)     ------->MYC3                                         --------->TOE1(3)     <-------MYC2                                      <-----------GT1------->TEIL                                    <---------AHL20(2)         ------->MYC2                  <-----------GT1   --------->AHL20(2) <---------DAG2    ---------->DOF2            <-------TEIL --------->MYB52(1) <-------MYC4        --------->MYB52(2)  <---------HSFB2a(2)   <---------MYB52(1)  ---------->DOF2    <-------MYC3      <---------MYB52(1)   agttctcaaagtcttcgtatttaccagttaagtttcatttaaaccctaaaggaagcacctttgcacatgtttcgactggtttagttagttctcgtcttaa  8583300                                 --------->ALFIN1                           ----------->HVH21                      --------->ARR14(2)                      <---------ARR14(2)                           --------->CCA1(2)     <---------YAB1  <------ZmHOX2a(1)                          ----------->ARR10   --------->YAB1  <---------TOE2(3)                  <---------YAB1                       --------->YAB1   ttctatgaagattagaatgttgaggaaccctgaaggtgttagagagttttcgagttttgattcgcagagatttgggaaacgaagtagtagtaatagtagt  8583400                                                   <---------MYB46(3)                                                   --------->MYB52(2)                                                  --------->ALFIN1                                                 <------NtERF2                        --------->At4g35610      <-------GAMYB                     ---------->DOF2            <---------MYB46(3)                   ------>ZmHOX2a(2)           <---------ANAC46         <-------TEIL      --------->At4g35610                <------ZmHOX2a(1)              <---------RAP2.6(2)     --------->GLK1(2)  <---------At4g35610          <------ZmHOX2a(1)        --------->CCA1(2)      <---------RAP2.6(3)   <---------ANAC58          ================HOX2a_HOX2a     <---------O2   <---------MYB46(3)     <---------ANAC46         --------->ICU4 <---------At4g35610 --------->ALFIN1  >>>>>>>ZML2       <---------ANAC58  <<<   agagggaagtcaggattaggatcgaaagcttaccgagataagagaagtggcggtagtggccgttctagtggagattcaatttgggtgaagtctgatgaga  8583500  Previous    Next  AGI:  At2g19870.1    Description:  tRNA/rRNA methyltransferase (SpoU) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO65446.1); contains InterPro domain RNA 2-O ribose methyltransferase, substrate binding (InterPro:IPR013123); contains InterPro domain RNA methyltransferase TrmH, group 3; (InterPro:IPR004441); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) Range:  from: 8582960    to: 8585029    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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