Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      ----------->GT1              --------->ANAC58                                                                      <              --------->ANAC46                                                                      <              --------->ANAC58                                                                -------           --------->ETT(2)                                                                 --------- >DAG2     <---------ETT(2)                                         <---------MYB59        <--------- >DOF2    --------->DDF1               --------->At4g35610--------->AHL20(2)        ---------->DOF2 -   actaaaaccaatgtcgacgaaactgataaatctaaacaagtagatgaaaaattagggaaatgaattaagacccaattagaccagaagaaagaagaagtga  8518200        <----------DOF2                                                   <----------DOF2    <-----------GT1                                                     --------->HSFB2a(1) -----------ARR10--------->YAB1                                         --------->HSFC1(2) ---------ARR11(3) --------->ICU4                                       <---------HSFC1(2) ---->GT1     <----------DOF2                                       --------->DEAR3(1) -->GT1<---------DAG2                      <---------TOE2(3)       --------->ANAC46                 = --------------TaNAC69(2)                --------->MYB52(1)      <---------ALFIN1                   < -------->ARR11(3) <---------YAB1    <---------ARR11(3)       --------->ANAC46                 ------   aaaatctcacctttctctttcatgattttgagaaacgaagacattacggtagagacaggtttcaactccaccgaagctttccctcgcttctcagcattca  8518300                                              --------->KAN4(2)                                             <---------HSFB2a(1)                              ==================HOX2a_HOX2a  --------->KAN4(2)           ------>ZmHOX2a(1) ====================================HOX2a_HOX2a ------>ZmHOX2a(2)           <---------ALFIN1--------->HSFB2a(1) --------->HSFB2a(1)   --------->ARR14(2)    --------->HSFC1(2)                              -------- ====================================HOX2a_HOX2a     --------->GLK1(1)          --------->YAB1 ------ZmHOX2a(2)      <---------GLK1(2)     <---------HSFC1(2)                ----------->HVH21  --- --->YAB1    ------->TEIL <-----------GT1------>ZmHOX2a(2)        --------->GLK1(2)       --------->YAB1   cgatcgttctcaatgcatcgttcaatattctcctccccattgatcgaaaattccgatttctaatacaaattctataatcgaatgacaacgaatcaaaaag  8518400                               <------ZmHOX2a(1)                              --------->ANAC58                              --------->ANAC58                            <-----------RAV1(2)                           --------->ZAT2                        --------->At4g35610                        --------->ZAT14   --------->KAN4(2)                     ------->GAMYB   ----------->GT1            <---------ANAC46 -->DOF2   ---------->DOF2 --------->At4g35610              <------------CBF ------>GLK1(2)      *TSS ----------->RAV1(1)   <---------TOE1(2)                            <-------   aatcgataacccctaaagttcaacagagcagcaggaaatgggtttattccaacgtttctcagaattgtgggtatttcgacatttcgaaaaacattagggg  8518500                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             ------>NtERF2                                                                                             <-------                                                                                             <-------                                                                                             --------                                                            ----------->TBP                 ---------                <-------TEIL                                --------->AHL20(2)              <--------               --------->DOF5.7(2)                        ----------->TBP                   *TSS<----       <----------DOF2                              <-----------HVH21                      <---------LBD16 --ANAC46  <-----------GT1                <---------AHL20(2)<---------AHL20(2)       ---------->DOF2   tattttagacttttcacgttcacttacatgagctagggttttatttttttcagaggtcatatataaatagctccattcgtcttctaacaaagctccggcg  8518600     --------->AHL20(2)     <---------AHL20(2) --------->RAV1(1) ---->NtERF2 ------>RAP2.3(3) ------>DEAR3(1) -------ALFIN1 ------>RRTF1(3) ---NtERF2 ----->ATERF1(1) ----->ERF1 ----->RAP2.3(1) ---->ABI4(2) -----ATERF1(1) ->NtERF2 --->RRTF1(2) ----TCP16(1) --->PCF2--------->RVE1(1) --->RAP2.3(3) --->RAP2.3(2) --->ANAC46 ----TCP20 --->DEAR3(1) -->RRTF1(1) -->ATERF1(1) -->RAP2.3(1) -->ERF1--------->ARR11(3)                       <---------ZAT6 --RAP2.3(1)                               <---------At4g35610                                 <----- --ATERF1(1)                           --------->At5g28300                                   <------- ->LBD16<---------ARR11(3)          <---------At5g28300                          <---------ANAC58 >DEAR3(1)            <---------ARR14(2)   <---------ZAT2                        <---------ANAC58 -DEAR3(1)            --------->ARR14(2)   --------->At4g35610          <---------ZAT14   <---------ANAC58 -----RAP2.3(1)   ------>ZmHOX2a(2) <---------LBD16 <-----------GT1     --------->ZAT14   <---------ANAC58   ccaccattaaaatctctcgatctctatctgcgaaatttcacggtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagct  8518700                    <---------CCA1(1)                    <---------RVE1(1)                                                            <---                   <---------ARR11(3)                                                 --------->ATHB12                   --------->ARR11(3)                                             <---------MYB46(3)                 ----------->ARR10                                             <-----------RAV1(1)     ------>ZmHOX2a(2)              --------->At4g35610                 <---------TOE2(3) <------MYB46(1)   --------->ARR11(3)               <---------ZAT2                ------>ZmHOX2a(2)   <---------MYB46(3)   <---------ARR11(3)    <---------YAB1    --------->YAB1 <------ZmHOX2a(1) ------->TEIL  <------MYB83 ----ANAC46   <---------ANAC46    <---------ZAT18         ===============HOX2a_HOX2a <---------YAB1 < --TOE1(2)  <---------ANAC46    <---------At4g35610  <----------DOF2 <---------MYB52(1) <---------WOX13(1)   tagatgatctgattttgtgtagatattttgattcagcgagctctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagta  8518800                                                                 ------>ZmHOX2a(2)                    <------MYB83                                <------ZmHOX2a(2)                    <------MYB46(1)                            <---------ARR14(2)                   --------->MYB46(2)         ==========================HOX2a_HOX2a                   --------->MYB111(1)        =========================HOX2a_HOX2a                   --------->MYB59            <------ZmHOX2a(1)--------->ARR14(2)                   --------->MYB111(2)        =================HOX2a_HOX2a                  <---------MYB55(1)        --------->LBD16    <---------ARR11(3)                  <--------P               --------->HSFB2a(2) --------->ARR11(3)               <---------TOE2(3)           <---------HSFB2a(2)--------->GLK1(1)                    --          <---------ANAC46          <------NtERF2             <---------GLK1(1)                    <-         <---------AtMYB61         ------>NtERF2         --------->HSFB2a(2)               <---------REM1(1)         --------->ALFIN1          ----------->RAV1(1)   <---------HSFB2a(2)          <---------ANAC46       <---------ANAC46            ------------>AtMYB77 ------>ZmHOX2a(2)             <---------ANAC58 ------YAB1 <---------REM1(1)     --------->ETT(2)    --------->ARR11(3)              <---------ANAC58 ---------YAB1 <---------TOE1(3)  <---------ETT(2)    <---------AGP1         --------->MYB46(3)    <-   tcatttttggtgtggtgaaggtaggtatttgaaatggcgacagttccaggacaattgatctgggagatcgtgaagaacaacaactgtttcttggtgaagc  8518900                                                          <-------TEIL          --------->ARR14(2)                          ------>MYB83          <---------ARR14(2)                          ------>MYB46(1)         <------ZmHOX2a(1)                          --------->DEAR3(1)  <---------ANAC46                                 --------->MYB46(3)  <------MYB83                                 --------->AtMYB61  <------MYB46(1)                            -------->P --------->TOE1(3) --------->MYB46(2)                         ------->GAMYB--------->DOF5.7(2)        --------------->AtSPL8 --------->MYB59      <-------TEIL         <------------MYB.PH3(2)           ----------->GT1 ------->ARR14(2) <---------TOE1(2)        --------->MYB46(3)        --------->ANAC58 --------ARR14(2) <---------TOE2(3)        <---------MYB111(2)       --------->ANAC46 --------MYB52(1) <---------TOE1(3)      --------->MYB52(1)          --------->ANAC58              --   agttcggtagaggaaactctaaggttcaattcagcaaggagactaacaacctcaccaacgttcactcttacaagcactctggtaaatttgtactcttgtt  8519000                                                                          <--------P                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                         <-------GAMYB                                                                        --------->MYB52(2)                                                                        <---------MYB46(3)                                                                        <------MYB46(1)                                                                        <------MYB83                                                           <-----------GT1<---------WOX13(1)                            <---------ARR11(3)           <----------DOF2--------->MYB55(2)                            --------->ARR11(3)     --------->ATHB12    <---------MYB46(3)                   --------->ANAC58                -------->HAHB4      <---------AtMYB61       <----------DOF2     --------->GLK1(1)       --------->YAB1      --------->MYB111(1)    --------->GLK1(2)      <---------GLK1(1)       <---------ICU4     <--------P   <---------GLK1(2)     --------->YAB1           <---------ATHB12   <---------MYB52(1) ------->ANAC55(2) --------->ANAC58               --------->ICU4    <---------MYB46(3)    --------->ATHB12   tacgagattctttgtttctgaacgaaatgatatcttggccatttgagaacaaatgattactttacatctctggttggttgatttagtagaatagattggg  8519100  Previous    Next  AGI:  At2g19720.1    Description:  RPS15AB (ribosomal protein S15A B); structural constituent of ribosome. Identical to 40S ribosomal protein S15a-2 (RPS15AB) [Arabidopsis Thaliana] (GB:O82205); similar to RPS15AE (ribosomal protein S15A E), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G29430.1); similar to unknown [Populus trichocarpa] (GB:ABK94220.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) Range:  from: 8517102    to: 8518421    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g19730.1    Description:  60S ribosomal protein L28 (RPL28A). Identical to 60S ribosomal protein L28-1 (RPL28A) [Arabidopsis Thaliana] (GB:O82204); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.2); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.1); similar to unknown [Populus trichocarpa] (GB:ABK92708.1); contains InterPro domain Ribosomal protein L28e; (InterPro:IPR002672) Range:  from: 8518592    to: 8520303    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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