Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------ICU4                                                    --------->ATHB12                                                    -------->ATHB1                                                    --------->YAB1                                                   <---------YAB1                                                   <---------ATHB12       ------>MYB46(1)                 <---------HSFB2a(2)               --------->ICU4         ------>MYB83                 --------->HSFB2a(2)          --------->TOE2(3)        --------->MYB46(3) <---------GLK1(2)                            --------->TOE1(3)      <-----------GT1              --- ---->MYB52(1) --------->At4g35610        ---------->DOF2         <---------REM1(1)               <--   acagaaacttttcaatcttctgcaacttcatagttaaccaagaacaaagcttaatcattgggaccatgttgtaaccaatctcttacatcgagtgatcaca  8518000                               --------->At4g35610                               <---------At4g35610                            <------ZmHOX2a(2)                            =================HOX2a_HOX2a                       --------->ZAT14                           <---------ARR14(2)                                  <---------ZAT14                           --------->ARR14(2)                            --------->YAB1                  <---------ANAC58                                      <---------ATHB12                  <---------ANAC55(1)      ------>MYB83               --------->YAB1        ---------                  <---------ANAC55(2)     ----------->RAV1(1)       <---------YAB1         ----------                  <---------ANAC58    <------ZmHOX2a(1)            --------->TOE2(3)   --------->ANAC46     --------->GLK1(2)    <------ZmHOX2a(1)------>MYB46(1)        <--------HAHB4       --------->ANAC58 ---->MYC3        --------->ANAC55(2) ==================================HOX2a_HOX2a    --------->ANAC58 -----MYC3    <----------DOF2  --------->ZAT2                    <------ZmHOX2a(2)     --------->AtLEC2   catggaaattcttgagctatacgtgttaggatcagctcaaggaccaacaaaacaatagagactatggatcattaatcatacttcactacaagcaaaagtg  8518100                    ----------->GT1              --------->ANAC58                                                                      <              --------->ANAC58                                                                      <              --------->ANAC46                                                                -------           --------->ETT(2)                                                                 --------- >DAG2     <---------ETT(2)                                         <---------MYB59        <--------- >DOF2    --------->DDF1               --------->At4g35610--------->AHL20(2)        ---------->DOF2 -   actaaaaccaatgtcgacgaaactgataaatctaaacaagtagatgaaaaattagggaaatgaattaagacccaattagaccagaagaaagaagaagtga  8518200        <----------DOF2                                                   <----------DOF2    <-----------GT1                                                     --------->HSFC1(2) ---------ARR11(3) --------->ICU4                                       --------->HSFB2a(1) -----------ARR10--------->YAB1                                         <---------HSFC1(2) ---->GT1     <----------DOF2                                       --------->DEAR3(1) -->GT1<---------DAG2                      <---------TOE2(3)       --------->ANAC46                 < --------------TaNAC69(2)                --------->MYB52(1)      <---------ALFIN1                   = -------->ARR11(3) <---------YAB1    <---------ARR11(3)       --------->ANAC46                 ------   aaaatctcacctttctctttcatgattttgagaaacgaagacattacggtagagacaggtttcaactccaccgaagctttccctcgcttctcagcattca  8518300                                              --------->KAN4(2)                                             --------->HSFB2a(1)                              ------>ZmHOX2a(1)  --------->KAN4(2)           ==================HOX2a_HOX2a --------->HSFB2a(1)         <---------ALFIN1<---------HSFC1(2) ====================================HOX2a_HOX2a ------>ZmHOX2a(2)     <---------GLK1(2)     --------->HSFC1(2)                              -------- ------ZmHOX2a(2)      --------->ARR14(2)    <---------HSFB2a(1)                --------->YAB1 ====================================HOX2a_HOX2a     --------->GLK1(1)         ----------->HVH21  --- --->YAB1    ------->TEIL <-----------GT1------>ZmHOX2a(2)        --------->GLK1(2)       --------->YAB1   cgatcgttctcaatgcatcgttcaatattctcctccccattgatcgaaaattccgatttctaatacaaattctataatcgaatgacaacgaatcaaaaag  8518400                               <------ZmHOX2a(1)                              --------->ANAC58                              --------->ANAC58                            <-----------RAV1(2)                           --------->At4g35610                        --------->At4g35610                        --------->ZAT14                     ------->GAMYB   ----------->GT1            <---------ANAC46 -->DOF2   ---------->DOF2 --------->ZAT2 --------->KAN4(2) <------------CBF ------>GLK1(2)      *TSS ----------->RAV1(1)   <---------TOE1(2)                            <-------   aatcgataacccctaaagttcaacagagcagcaggaaatgggtttattccaacgtttctcagaattgtgggtatttcgacatttcgaaaaacattagggg  8518500                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             ------>NtERF2                                                            <---------AHL20(2)              *TSS-----                <-------TEIL                                --------->AHL20(2)              <--------               --------->DOF5.7(2)                        ----------->TBP                   ---------       <----------DOF2                              <-----------HVH21                      <---------LBD16 --ANAC46  <-----------GT1                <---------AHL20(2)----------->TBP          ---------->DOF2   tattttagacttttcacgttcacttacatgagctagggttttatttttttcagaggtcatatataaatagctccattcgtcttctaacaaagctccggcg  8518600     --------->AHL20(2)     <---------AHL20(2) ---->NtERF2 --------->RAV1(1) ------>RRTF1(3) -------ALFIN1 ------>RAP2.3(3) ------>DEAR3(1) ----->RAP2.3(1) ----->ATERF1(1) ---NtERF2 ----->ERF1 ---->ABI4(2) -----RAP2.3(1) -----ATERF1(1) --->RAP2.3(2) --->DEAR3(1) ----TCP20 --->PCF2 --->RAP2.3(3) --->RRTF1(2) --->ANAC46 ----TCP16(1) -->ATERF1(1) -->ERF1<---------ARR11(3) -->RAP2.3(1) -->RRTF1(1)                                     <---------ZAT6 --ATERF1(1)                               <---------ZAT2                                      <----- --RAP2.3(1)          --------->ARR14(2)   --------->At4g35610                               <------- ->LBD16--------->ARR11(3)             --------->At5g28300                       <---------ANAC58 ->NtERF2--------->RVE1(1)          <---------LBD16 <-----------GT1              <---------ANAC58 -DEAR3(1)            <---------ARR14(2)   <---------At4g35610          --------->ZAT14   <---------ANAC58 >DEAR3(1)        ------>ZmHOX2a(2) <---------At5g28300                 <---------ZAT14   <---------ANAC58   ccaccattaaaatctctcgatctctatctgcgaaatttcacggtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagct  8518700                    <---------RVE1(1)                    <---------CCA1(1)                                                            <---                   <---------ARR11(3)                                                 --------->ATHB12                   --------->ARR11(3)                                             <---------MYB46(3)                 ----------->ARR10                                             <-----------RAV1(1)     ------>ZmHOX2a(2)              <---------ZAT2                      <---------TOE2(3) <------MYB83   --------->ARR11(3)               --------->At4g35610           ------>ZmHOX2a(2)   <---------MYB46(3)   <---------ARR11(3)    <---------YAB1    --------->YAB1 ===============HOX2a_HOX2a <---------YAB1 < ----ANAC46   <---------ANAC46    <---------ZAT18         <------ZmHOX2a(1) ------->TEIL  <------MYB46(1) --TOE1(2)  <---------ANAC46    <---------At4g35610  <----------DOF2 <---------MYB52(1) <---------WOX13(1)   tagatgatctgattttgtgtagatattttgattcagcgagctctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagta  8518800                                                                 ------>ZmHOX2a(2)                    <------MYB46(1)                             <------ZmHOX2a(2)                    <------MYB83                               --------->ARR11(3)                   --------->MYB111(2)        =================HOX2a_HOX2a                   --------->MYB59            <------ZmHOX2a(1)<---------ARR11(3)                   --------->MYB111(1)        ==========================HOX2a_HOX2a                   --------->MYB46(2)         =========================HOX2a_HOX2a                  <--------P                --------->LBD16    --------->ARR14(2)                  <---------MYB55(1)       --------->HSFB2a(2) <---------ARR14(2)               <---------TOE1(3)           <---------HSFB2a(2)--------->GLK1(1)                    --          <---------ANAC46          <------NtERF2             <---------GLK1(1)                    <-         --------->ALFIN1          ------------>AtMYB77  <---------HSFB2a(2)               <---------REM1(1)         <---------AtMYB61         ----------->RAV1(1)   --------->HSFB2a(2)          <---------ANAC46       <---------ANAC46            ------>NtERF2        ------>ZmHOX2a(2)             <---------ANAC58 ------YAB1 <---------REM1(1)     <---------ETT(2)    <---------AGP1                  <---------ANAC58 ---------YAB1 <---------TOE2(3)  --------->ETT(2)    --------->ARR11(3)     --------->MYB46(3)    <-   tcatttttggtgtggtgaaggtaggtatttgaaatggcgacagttccaggacaattgatctgggagatcgtgaagaacaacaactgtttcttggtgaagc  8518900  Previous    Next  AGI:  At2g19720.1    Description:  RPS15AB (ribosomal protein S15A B); structural constituent of ribosome. Identical to 40S ribosomal protein S15a-2 (RPS15AB) [Arabidopsis Thaliana] (GB:O82205); similar to RPS15AE (ribosomal protein S15A E), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G29430.1); similar to unknown [Populus trichocarpa] (GB:ABK94220.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) Range:  from: 8517102    to: 8518421    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g19730.1    Description:  60S ribosomal protein L28 (RPL28A). Identical to 60S ribosomal protein L28-1 (RPL28A) [Arabidopsis Thaliana] (GB:O82204); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.2); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.1); similar to unknown [Populus trichocarpa] (GB:ABK92708.1); contains InterPro domain Ribosomal protein L28e; (InterPro:IPR002672) Range:  from: 8518592    to: 8520303    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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