Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <------MYB46(1)                                                                                          <------MYB83                                                                                          <---------MYB46(3)                                                                                         <---------AtMYB61                                                                                   <---------ANAC46                                                              <---------HSFB2a(2)--------->ARR14(2)              ----------->GT1                                 --------->HSFB2a(2)<-----------HVH21            <---------ANAC46                                 <xxxxxxxxxxxxxxxxsmallRNA(i)--------->MYB59          <-----------HVH21                                <---------MYB52(1)    <---------ARR14(2)     --------->ARR14(2)                                 ------>ZmHOX2a(2)      --------->LBD16     --------->KAN4(2)                                  <-------TEIL          <---------ANAC58      <     <---------ARR14(2)                                --------->ARR14(1)     <---------ANAC58      <    <----------TaMYB80                                 <------ZmHOX2a(2)      <---------ANAC46      <    <---------GLK1(1)                                 <---------ARR11(3)     <---------LBD16     ----   --------->ARR14(2)                                 --------->ARR14(2)   --------->GLK1(2)     <---   <---------ARR14(2)                                 <---------ARR14(2)  <---------ARR14(2)   <----- ------MYB46(3)<---------MYB52(1)   <---------ANAC46  --------->ARR11(3)  --------->ARR14(2)   <----- -YAB1  --------->MYB59            <---------LBD16    --------->AGP1      <---------GLK1(2)   -------   gtttggatattcggtcgggtattttgggtttgagtttttcgggtttagaattttaagatccgttcgagtaattcaagattccgggtcgggtttggttcgg  8462600                                                     --------->ATHB12                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                     --------->ATHB51                                                    --------->AHL20(2)                                                    <---------AHL20(2)                                                    <---------AHL20(1)                                                 <---------AHL20(1)                                                 --------->AHL20(2)             <---------AHL20(1)                  <---------AHL20(2)                               <-- ---------ANAC58                                 --------->AHL20(1)                               <-- ---------ANAC58                                --------->AHL20(2)                                <-- ---------ANAC46                          --------->ARR14(2)                                      <-- ----->ARR14(2)                           --------->GLK1(2)                                ---------- ------ARR14(2)                           <---------ARR14(2)                         <xxxxxxxxxxxxxxx -MYB83----------->GT1   --------->YAB1   <---------ARR11(1)                       -------->P   <---- -MYB46(1)   --------->AHL20(1)           ------->TEIL                             --------->MYB52(1) -->MYB59    --------->ARR11(3)          <---------ARR14(1)                      --------->MYB46(3) <   tttcgggtttagttatatattgaaatatcaaaattttgtgtccgaatctattaaattatttgaaaatttcaaaaattccctaaacaacccgagtagtttt  8462700      <---------AHL20(2)     --------->AHL20(2)     <---------ARR11(3)     <---------AHL20(1)     --------->AHL20(1)                            <---------AHL20(2)     --------->ARR11(3)                           --------->YAB1     <---------AHL20(2)                          <---------YAB1                   --------->AHL20(1) -------AtLEC2                      <---------ARR14(2)                            <---------AHL20(1) -------ANAC46                      --------->ARR14(2)                            --------->AHL20(2) -------ANAC58        ---------->DOF2          --------->YAB1                --------->AHL20(2) -------ANAC58   <-------TEIL      --------->RVE1(1)                         <---------AHL20(2) ->ARR10  --------->AHL20(2)       <---------GLK1(1)                   <---------AHL20(2)       <---- xxxxxsmallRNA(s2)<---------ANAC55(2)   --------->LBD16                --------->AHL20(2)       ----- -----YAB1<---------AHL20(2)       --------->CCA1(1)             --------->AHL20(2)         <-------- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ANAC46        ----------->GT1   <---------AHL20(2)   gcttgaatatatttaaaaatacataaaagtaactaaaatatccgaaaaatcataatattgtctatatgtaaatataaatataaatattttagttatattt  8462800                   ----------------->AGL1                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <---------ANAC58         <---------YAB1--------->ARR14(2)                           --------->GLK1(1)       --------->CCA1(2)                                            <---------RVE1(1)          <<<<<<      <---------ARR11(3)                                            <---------GLK1(1)         <------    <---------TOE2(3)  <---------ARR14(2)                          <---------ARR14(2)         <------ -----AHL20(2) <---------ANAC58          <---------TOE2(3)         --------->ARR14(2) <-------TEIL ---->AHL20(2)--------------->AtSPL8     <---------TOE1(3) <-------TEIL           <---------TOE1(3) -YAB1--------->ARR11(3)      <-------TEIL   xxxxxxxxxxxxxxxx>smallRNA(i)        <-----------RAV1(2)   atatttaagatatgtttgggtaccagttcgggttcgggtttttcaggttttgaagtttagattcagtcggatatttgaaaatttcaggttcgaatttaga  8462900                                                                                          <---------MYB46(3)                                                                                         <--------P                                                    <-----------RAV1(2)                 <-------GAMYB                                        <---------MYB52(1)                             --------->MYB52(2)                                     ------>ZmHOX2a(2)                                 --------->MYB55(2)                                    <------ZmHOX2a(2)                                 <---------AtMYB61                                   --------->ARR14(2)                            <---------DOF5.7(2)                               <-------TEIL      --------->ARR14(2)              --------->MYB52(1)   <----------DOF2        ------>ZmHOX2a(2)      <---------ARR14(2)             <---------WRKY12 <<<RAP2.2              <---------ARR14(2)   <---------LBD16                    <---------WRKY38(1) ---TOE2(3)             --------->ARR14(2)  <-----------GT1         ----------->GT1   --------->ALFIN1 ---YAB1         <----------DOF2   <---------ARR14(2)<---------TOE2(3)   --------->ICU4<---------MYB46(3)   ttgggatttttggattgggatttttggatcgggttcagatcggttttttcggattcaggtattatgtccaaagtaaaaatggtaaacggtggttgttttg  8463000                                          --------->ANAC58          ---------->DOF2                                          --------->ANAC58       --------->AHL20(2)                           --------->CCA1(2)             ----------->GT1                  *TSS    --------->ARR11(3)             <----------ID1         <------ZmHOX2a(1)              --------->At4g35610       ---------->DOF2---------->DOF2        ----------->GT1      --        ---------->DOF2   <---------ARR11(3) ---------->DOF2     <---------AHL20(2)         <--------   tttgtatttgtaaagcagaagagagagagatatagagacactgaaagcaaagaccaaaaaagaaaaattaaaaagagagagaggaaaatggagagcgacg  8463100                                                    <---------HSFB2a(2)                                                    --------->HSFB2a(2)                                                 <----------DOF2                              -------                                               --------->HSFB2a(1)                           --------                                --------->MYB52(1)----------->RAV1(2)                        <-------                              --------->DEAR3(1) --------->GLK1(2)                           <-------                            ------>NtERF2      <---------HSFC1(2)                            <-------                         ------->GAMYB         <---------At4g35610                           --------                        --------->MYB46(3)     <---------HSFB2a(1)                          ---------     <---------At4g35610--------->ANAC58       <---------ZAT2                               <--------     --------->At4g35610--------->bZIP60(2)    --------->HSFC1(2)                           ---------     --------->ZAT2--------->ANAC58           --------->ARR14(2)                           ----------    ----------->RAV1(1) --------->ANAC46      <---------ARR14(2)                       --------->ANAC58  --------->ZAT2   --------->ANAC58         --------->LBD16                          --------->TOE2(2)  <---------At4g35610   --------->ANAC58  <---------LBD16                            --------->TOE1(2)  --------->At4g35610 --------->MYB52(1) --------->MYB52(1)                   --------->TOE2(3) ----------->RAV1(1)--------->MYB46(3)  --------->ARR14(2)                    --------->TOE1(3) ------->At4g35610 --------->ANAC46     <---------ARR14(2)                 --------->GLK1(1)<-------- --ID1          ------>ZmHOX2a(1)      <------ZmHOX2a(1)  <------NtERF2--------->ETT(1)--------->ANAC58   aagcagcagcagtgtctcctcaagcaacgacaccgagcggaggaaccggagcttctgggccgaagaagagaggtcggaaacctaaaaccaaggaagattc  8463200       <------NtERF2       --------->ATERF1(1)      <-----------HVH21      <---------ATERF1(1)      ------>NtERF2     --------->DEAR3(1)    --------->RAP2.3(1)    <------NtERF2    --------->ATERF1(1)   <---------ATERF1(1)                                               ------>NtERF2   ------>NtERF2                                                    --------->DEAR3(1)  --------->ANAC58                                                 <------NtERF2  --------->ANAC58                                               <---------DEAR3(1)  --------->ANAC46                                              --------->ATERF1(1) -->GLK1(2)                                                    <-----------HVH21 ->ARR11(3)                                                 <---------ZAT2 --ARR11(3)                                                 --------->ZAT2 --GLK1(2)                                                  --------->ZAT14 --ARR14(2)                                                 <---------At4g35610 ->ARR14(2)                ----------->GT1                  --------->At4g35610 >HSFB2a(1)         ------->GAMYB            --------->ALFIN1  <---------ATERF1(1) -HSFC1(2)       ----------->RAV1(1)      --------->DAG2   ----------->RAV1(1) >HSFC1(2)     <---------At4g35610       ---------->DOF2--------->ANAC58 ->ARR10       --------->At4g35610   ---------->DOF2    --------->ANAC46<---------ZAT6--------->ZAT14 -HSFB2a(1)   --------->ANAC46 <---------AHL20(2)       --------->ANAC58--------->ALFIN1         ----   tcagacgccgtcgtctcagcaacagagcgatgttaaaatgaaagaaagtgggaagaaaacgcagcagtcgccgagtgttgacgagaagtactctcagtgg  8463300                                       <---------ARR14(2)                                       --------->ARR14(2)                                    --------->TOE2(3)                               <----------DOF2                                    --------->YAB1                           <----------DOF2                                    --------->TOE1(3)                       <---------DAG2       ---------->ID1        --------->ANAC58                          <---------ATERF1(1) <---------ARR11(3)          --------->ANAC58                       <-----------ARR10 --------->ARR11(3)        <---------ANAC58                         --------->ARR14(2)        ------>ZmHOX2a(1) ------>DOF2               <---------ANAC58   ----------->RAV1(2)   <---------ARR14(2)   ------>ZmHOX2a(1)   aaaggtctcgtccccattctctacgactggctcgctaaccataacctcgtctggccttcactctcttgcaggtctccccctttctcctttcctctccttc  8463400          <---------ANAC58          <---------ANAC46          <---------ANAC58          --------->ANAC55(2)            <---------YAB1          <---------ANAC55(2)           <---------TOE1(2)      <---------ARR11(3)        <---------LBD16       <---------MYB52(1)         --------->KAN4(2)      ----------->GT1          --------->HSFB2a(2)     <---------ANAC58            <---------KAN4(1)   ------->TEIL         <-------TEIL<---------GLK1(1)     <---------ANAC58      <----------DOF2--------->ATHB12     --------->ARR11(3)<-----------GT1   tagggtttcgtttcgtaatcgtttcttagctttgaacattctcatgtttggaatgaatttagtaaaatcttacacatacattttctcgatttctgggttt  8463500  Previous    Next  AGI:  At2g19520.1    Description:  FVE. Identical to WD-40 repeat-containing protein MSI4 (MSI4) [Arabidopsis Thaliana] (GB:O22607;GB:Q42322;GB:Q42323;GB:Q58T21;GB:Q93VF7;GB:Q9SLD1); similar to NFC5 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 5) [Arabidopsis thaliana] (TAIR:AT4G29730.1); similar to WD40-like [Medicago truncatula] (GB:ABN08755.1); similar to FVE [Pisum sativum] (GB:AAX47182.1); similar to FVE [Ipomoea nil] (GB:ABB54381.2); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 8463018    to: 8466607    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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