Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            --------->ETT(2)                      -------->ATHB1                      --------->ATHB12                      --------->ATHB51                      <---------AHL20(2)                      <---------ICU4                      -------->HAHB4                     <---------ATHB51                                                     ----------- ------->GLK1(1)     --------->ICU4                                                       <xxxxxxxxxx --------GLK1(1)     <---------YAB1                                           ------>NtERF2 --->LBD16         <--------HAHB4                                             ----------->RAV1(1) -->HSFB2a(2)      <---------ICU4                  <---------AHL20(2)         --------->LBD16   <---- ---LBD16         <---------YAB1       --------->TOE2(3)                     --------->ANAC46   ----- --ANAC46         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)            ---------->ID1    --------->DAG2  < --LBD16          --------->ICU4 --------->At5g28300     ----------->RAV1(1)<---------LBD16 <xxxxxxxx -LBD16         --------->YAB1  ----------->GT1   --------->AHL20(2) <---------YAB1---------->DOF2  <   gatttcattcactatatttcataattattgtctacggtaaatgttaactacatttaatgcaacattttgttcttattctccgccataaagctgtttttct  8459900           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------YAB1       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <-----------GT1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC58   --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               xxx ------------>TaNAC69(2)                                                   --------->TOE2(3)      --- xxxxxxxxxxxxxsmallRNA(si3)                                           --------->YAB1           ------ -----HSFB2a(2)                                             --------->AHL20(1)              --------- ---->HSFB2a(2)       --------->ZAT6                        --------->AHL20(2)              <-------- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------AHL20(2)           <---------ZAT6 xxxxxxxxxxxxxsmallRNA(se3)                 <----------ID1  <---------AHL20(1)        <--------P xxxx xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<----------DOF2 ----------->GT1 <---------YAB1<---------YAB1xxxx   ggcacaagttaccatttttctctaacacaaactttcacacttttaagggacaaaattgtcaataaaatactataataccataaatatggtagttttagaa  8460000                             --------->ARR11(3)                             <-----------ARR10                  --------->ARR14(2)                  <---------ARR14(2)                                              <---------AHL20(2)      <---------YAB1         --------->GLK1(2)                                   --------->YAB1 xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                              <---------AHL20(2) -------->GT1     --------->ARR11(1)                                           --------->AHL20(2) ---->DOF2      ----------->ARR10                                              --------->AHL20(1) >HSFB2a(2)    <--------P   <---------GLK1(2)                            ----------->GT1 -HSFB2a(2) <---------TOE2(3)<---------ARR11(3)                         <---------TOE2(3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)         ----------->GT1--------->KAN4(2)    <---------AHL20(1) xxxxxxxxxxxxxxxxxx>smallRNA(i2)      ---------->DOF2------------>CBF   <---------TOE1(3)     <------   aggtcaatacaattgtggtagatttggaaagaatcttttcaaaagttgtaaactagtcaatattcccaaaatttagggtaatataatattagtttttttc  8460100                                                                                          <---------AHL20(1)                                                                                          <---------AHL20(2)                                                 --------->ALFIN1                         --------->AHL20(2)                                              <---------TOE2(3)                   <---------GLK1(1)                                            <---------AHL20(2)                    --------->GLK1(1)                                        <---------AHL20(2)                       <---------AGP1                                        --------->AHL20(1)                       <---------ARR11(3)                                        --------->AHL20(2)                <---------AHL20(2)                        --------->HSFB2a(2)<---------AHL20(2)          <-----------------AGL3      --                        <---------HSFB2a(2)--------->AHL20(2)      --------->ANAC46------>ZmHOX2a(2)                  <-----------GT1       <---------AHL20(1)        ------->TEIL   --------->ARR11(3)--            ------------>CBF           <---------AHL20(2)       <---------ZAT18 <---------CCA1(2)<--- -----GT1  --------->TOE2(3)           --------->AHL20(2)  <---------YAB1<---------AHL20(1)<---------AHL20(2)   aagtcaaatgtaatctcaatttacttccaaaacaaaacaaaataaattaatgtgttgaatttttaatgcacatcatatatttggatctctaattaatttc  8460200                                                                          ------------>CBF                         --------->AHL20(2)                               <---------ATHB12          -                         ----------->TBP                                --------->WOX13(1)          <                 --------->TOE2(3)               <---------ICU4       ------------>CBF              <                <---------ICU4                  --------->ICU4 --------->AHL20(2)            <-------                --------->YAB1             ----------->GT1   ------>ZmHOX2a(1)            ---------->DOF2 ------->WRKY12--------->ICU4  <---------ANAC55(2)          --------->TOE1(3)           --------->HSFB2a(2) ------->WRKY38(1)  <---------ARR11(3)     <---------ZAT6   --------->TOE2(3)    <---------YAB1     - -------DOF2   <---------ATHB12--------->ANAC55(2) <---------YAB1  <-----------GT1      <---------HSFB2a(2)   tttgactgcattctgcaaacattatctataaatacttatttgatagtgtaatttttattcatccttaaattactcaatcaatttttatttctaaaagaac  8460300                                    <---------ZAT2                           ----------------------->TaNAC69(2)                          ===============HOX2a_HOX2a                          ------>ZmHOX2a(2)         --------->HSFB2a(2)        --------->ZAT2         --------->ANAC55(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------HSFB2a(2)      ------>ZmHOX2a(1)      <---------YAB1     ================HOX2a_HOX2a   <---------YAB1        <------ZmHOX2a(2)                                            <---------LBD16  <------------CBF      <---------ARR14(2)          --------------->AGL15          <----------TaMYB80 -------->ATHB1         <---------ARR11(3)          <---------------AGL15         --------->ARR14(2) <---------ICU4         --------->ARR11(3)         <-----------------AGL3         <---------KAN4(2) --------->ATHB12       --------->ARR14(2)     ------->TEIL                       <---------ARR14(2) --------->ATHB51      --------->GLK1(1)<---------ANAC58                          ---------->TaMYB80 -------->ICU4--------->MYB46(3) <---------ANAC58  ----------------->AGL2   --------->TOE1(2) ---------ATHB51       <---------GLK1(1)<---------ANAC58               <---------TOE1(2)--------->LBD16 ---------AHL20(2)   <------ZmHOX2a(1)  <---------ANAC46              ------>ZmHOX2a(1)--------->ANAC46 ---ID1  <---------ANAC55(2)     <---------ANAC58  ----------------->AGL3 --------->GLK1(2) -------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)>>>>>>>>>>>>>AGL25<---------GLK1(2)     <-----   aaattattgttatggaaccactaggagatcgtcgtccttgctgcgtatgtatcaccaaaaatagaaattgtcctagattctgcgaatatgcggaatactt  8460400                                                                                   <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                             --------->AHL20(2)                                                    <---------At4g35610      <---------AHL20(1)                                             <---------ARR11(3)              <---------AHL20(2)                                        <---------YAB1                   <---------AHL20(2)                                     ------>ZmHOX2a(1)           --------->ANAC55(2)      <----------                            <----------DOF2  --------->ARR11(3)  <---------ANAC58 <---------AHL20(2)                            <---------DAG2  --------->YAB1       <---------ANAC58--------->YAB1               <---------DAG2       --------->TOE2(3)          <-----------GT1<---------AHL20(2) -----DOF2     <----------DOF2   <-----------GT1    --------->At4g35610  --------->AHL20(2)   tccatatgagttgtatactttttttaaaaactttttttccttactattatcttctgctaaacattttacttgatattaattaattttaattttcaggcga  8460500                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              <---------TOE2(3)                                        <------ZmHOX2a(2)                                        ================================HOX2a_HOX2a                                        <---------YAB1                                       --------->ARR11(3)                                       <---------ARR11(3)                                   ---------->DOF2                                                ---       ---------->DOF2           --------->ANAC58                                                 <--     <---------YAB1            --------->ANAC58                                                ------   <---------ICU4    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                      ------  --------->ICU4  <---------AHL20(2)  --------->YAB1                       <----------ID1      ------  <---------YAB1 <---------ATHB12--------->ANAC58                ------>ZmHOX2a(1)  <---------ANAC58- -RAV1(2)     --------->ICU4   --------->ANAC58                ----------->RAV1(2)  <---------ANAC58<   agtcattatgaaagtactaatgaattgtttggcacaccaaagatcattaagatgatgaggcatgctcctgaagaaaaaaaacaaatgcttgcaacttcca  8460600        <------MYB46(1)                             ----------->GT1        <------MYB83                               <---------AtMYB61 <---------ICU4                            <---------ARR14(2) --------->YAB1              ------>ZmHOX2a(2) <------MYB83 ------>YAB1             <---------ATHB12  --------->ARR14(2)                 <---------YAB1   ------ -------ICU4   <---------ANAC46         <---------ANAC46       <------ZmHOX2a(2)             ------>MYB83 --->TOE2(3) --------->ICU4--------->ARR11(3)  <------MYB46(1)<---------ARR11(3)      ---------->DOF2 --->YAB1    <---------YAB1<---------ARR11(3) --------->MYB59 --------->ARR11(3)     --------->ANAC46 --->HSFB2a(2) <---------ANAC58        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->ICU4 <---------ANAC58      --------->ALFIN1     ---------->DOF2 --------->ARR11(3) ------>MYB46(1) ---------YAB1--------->ATHB12 ------>ZmHOX2a(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------   taatcatggaaggtaatgcttggacaaatgatcctgtaagtggtggatttggtatggtgcaaaagatcatgtggaagattatgttacacaaagcctacct  8460700                                                                                                  ---                                                                                                 <---                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                            <--------                              ----------->GT1                                              <---------ATHB12                              <----------ID1                                               <---------ATHB51                      <------ZmHOX2a(1)               --------->ANAC55(2)                  --------->ICU4          <------ZmHOX2a(1)  ----------->GT1      <----------DOF2             <---------YAB1--------- --->TOE2(3)        <---------TOE2(3)         --------->REM1(1)             --------->AHL20(2)<------ >P------->TEIL     <---------TOE1(3)        <-------TEIL   <-------TEIL   <---------AHL20(2) -------   tcatgaactcgaggagaagattaaggaagagaaggaaaaaatcgagcttcatctttaagtgatacattgtagcatatattatttatgcatcaaataatga  8460800  Previous    Next  AGI:  At2g19510.1    Description:  LBD8 (LOB DOMAIN-CONTAINING PROTEIN 8). Identical to Putative LOB domain-containing protein 8 (LBD8) [Arabidopsis Thaliana] (GB:Q9ZUP0); similar to LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5) [Arabidopsis thaliana] (TAIR:AT1G36000.1); similar to unknown [Picea sitchensis] (GB:ABK27054.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883) Range:  from: 8460312    to: 8460758    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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