Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ------->TEIL                                                          --------->CCA1(2)                                                         --------->ARR14(2)                --------->WOX13(1)                       <---------MYB46(3)                <---------ARR14(2)          <---------ANAC58      <---------HSFB2a(1)                          --------->ATHB12                  <---------ANAC58      --------->HSFC1(2)                        <---------ANAC58               <---------AHL20(2)      --------->HSFB2a(1)               <----------DOF2  --------->ARR11(3)    --------->ARR11(3)      <---------HSFC1(2)                ------>ZmHOX2a(1)--------->ARR11(1)    --------->AHL20(1) --->ANAC58           <---------AtMYB61 <---------DAG2 ----------->ARR10       <---------AHL20(1)  <x --->ANAC58<----------DOF2  ------>ZmHOX2a(1)   <---------ANAC58         ----------->GT1 <xxxxxxxxxxx   catggggaagtttcttttactatggtggtcctggtcgaagtcctttttgtgcttgattagatatgcatcttatatatgtaaaatattgtgtatcaatcta  8390500                                     <---------MYB46(3)                                    <---------AtMYB61                                 <-----------RAV1(1)                                 --------->ALFIN1                               <-----------RAV1(1)                              xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                            <---------AHL20(2)                          <---------YAB1                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               ----------->RAV1(1)  --------->ALFIN1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->YAB1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->GLK1(1)                      <----      <-------GAMYB   ----------->GT1----------->GT1    --------->ARR11(3)                      -----      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ---------->DOF2 <---------YAB1              --------->ANAC58  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ANAC58  <-----------HVH21   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------GLK1(1)            <---------ZAT6 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC46    <---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(se3) <---------ZAT6 ----------->GT1<---------TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   tctatgtcagttatcaccagcatatagtattatatgtggtggtgaaaataaagtttaagatatcattatagttttgagactataactagtgtaagctagt  8390600                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      ------------------------>ANAC81                 <----------ID1                 ------------------------>ANAC81                                 ----------->GT1                 ----------->GT1                                               --------->ARR11(3)        ------------------------>ANAC81                    <-------TEIL        <---------ARR11(3)  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->ANAC58        ---------->DOF2 -----ZAT6      ------------------------>ANAC81    --------->ANAC58  ----------->GT1              <-- ------>GT1    ---------->DOF2                 <---------ZAT6        <---------ZAT6        <---------   gtaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaactagtgtaagccaaattcatcaatagggttaaaaagatagtttaatggattgag  8390700                                                                        <---------ANAC58                                                                        <---------ANAC58          <--                                                                        <-------GAMYB             <--                                                           --------->ANAC58                       <--            <------ZmHOX2a(1)                              --------->ANAC58         --------->CCA1(2)       --------->HSFB2a(2)                          ----------->GT1    <---------MYB46(3)        ---- ----------CBF----------->GT1     <---------ZAT6  ---------->DOF2     <---------AtMYB61   <XXXXXXXXXX ---CBF<---------HSFB2a(2)    ---------->DOF2  <-----------GT1 <---------DOF5.7(2) <---------ARR11(3)   tattgagttctcgaggaagttatattcttgtctaaagtgttatcacatttaacaaagtgaaacggcaacgttttggttgccacaagataaacaaaccatg  8390800         ----------->GT1       <------------CBF             <-------TEIL          ----------->GT1 -------ANAC58        --------->ANAC58                ---------->DOF2 -------ANAC58        --------->ANAC58             <----------ID1 -------ANAC46        <---------ANAC55(2)       ---------->DOF2                                 <---- ------>ID1           --------->ANAC55(2)--------->WOX13(1)                           --------->LBD16 XXXXXXXXXXXMIR447C   --------->ANAC46 ------------>CBF--------->DAG2           <---------ATERF1(1)   tcgttttcgaattgtgaaaacagcacgtagttagaaaattcatcaatctgaaaaggaaaagggtttcaaactctctctaggcggtctccgaattagcaaa  8390900                                                                             --------->ANAC58                                                               <---------ANAC58                                                               <---------ANAC46                                                  --------->ZAT14   --------->GLK1(2)                                        <---------AtMYB61      <---------ANAC58                                      <---------ANAC58 --------->ATHB12      --------->ANAC58   <----          <------------CBF            <---------ANAC58<---------YAB1--------->ARR14(2)          -----  <------------CBF                    <---------ANAC46--------->ICU4<---------ARR14(2)          <---- --------CBF                   ------------>CBF   <---------ZAT14  <---------GLK1(2)            -----   ttgaaattggcaaattgcaagagttttcgattcaacaatggtgtggtttcagtgcgatgattgtggcgagaatctgaagaagccaaggctaccgagacac  8391000                                                                                           --------->HSFC1(2)                                                                                           <---------HSFC1(2)                                                                                          ------->TEIL                                                                                          <---------ARR11(1)                                                                                          <----------                                                                                          <---------ARR14(2)                                                                                          --------->ARR14(2)                                                                                         <---------CCA1(2)       --------->ZAT14                                                               <-----------GT1       <---------ZAT14                                                             <---------YAB1       <---------ZAT18  --------->ZAT6                                        <---------ICU4       --------->ZAT18 <-------TEIL                                          <---------YAB1<---------HSFB2a(1) -----TGA1a            --------->ZAT18          <---------GLK1(2)            --------->ICU4--------->HSFB2a(1) ---->O2               <---------ZAT18        <---------YAB1               --------->YAB1<---------ARR14(1) -----O2               --------->ZAT14      --------->YAB1                 <---------At4g35610  ----- ---->TGA1a    ------>NtERF2                <---------At4g35610 <-----------GT1 <---------YAB1-------   atgagtatgtgcactgccaccaaggtacactaaaattgaaactctctgatgattctcttcttctcttaacctctctctgatgattattttcgaatcttct  8391100                                                                 <---------ICU4                                                              <---------ICU4                                                             --------->ICU4                 <--------                                                          <---------YAB1                    ---------                    <---------WRKY18(1)             --------->ZAT18                    --------->ICU4                   --------->WRKY38(1)              <---------ZAT18             --------->ZAT2            <---------ANAC58                     <---------ZAT6 <---------YAB1  <---------At4g35610 -ARR10     <---------ANAC58               --------->ANAC58  <---------YAB1     --------->At4g35610 ------>HVH21      --------->WRKY12        --------->ANAC58--------->YAB1      --------->GLK1(2) -->At4g35610   <---------AtLEC2  --------->ATHB12  <---------ZAT14         --------->DEAR3(1)    ---   gaccatcacagttttcttgcattgactgtggaaacatgtttgggcaagttagtgttcactatcataatcaatgcatcaccgaagctgtaagtatttattt  8391200                                                                       ----------->GT1                                                                    <---------ANAC58                                                                    <---------ANAC58                                                           <---------ANAC58                                                           --------->ANAC55(2)     <---------YAB1       <---------ATHB12                 <---------ANAC58   --------->YAB1 --------->YAB1                           <---------ANAC46                     <---- -AHL20(2)       <---------YAB1                            <---------ANAC55(1)             <<<<<<<<<< >AHL20(2)--------->WOX13(1)   --------->MYB52(1)          <---------ANAC55(2)  ===================== -------------->AGL1<---------YAB1      <---------TOE2(3)<-----------GT1        <------ZmHOX2a(1)   <   gccaattttgatcaatcttatgatgctaatcactaatggtttaagttttttagatttagttacgtttttttcttggtaaataggagaaatatggtccaat  8391300                                                                                <------MYB83                                                                                <------MYB46(1)                                                                               <---------TOE1(2)                <---------HSFB2a(1)                                            <---------------AtSPL8                --------->HSFB2a(1)                                <---------WRKY12    <------ZmHOX2a(2)                                              <---------WRKY38(1)     --------->ANAC46 -----ATHB12    --------->HSFC1(2)                      <---------MYB46(3)     --------------->AtSPL8 <<<<<<<LFY   ---------->DOF2                       ------>NtERF2 --------->WRKY18(1)<----------DOF2 ==========HOX2a_HOX2a     ---------->DOF2  <---------AHL20(2)  ------->GAMYB  --------->MYB59 ---------ZAT18 <---------HSFC1(2)          --------->AHL20(2) --------->MYB46(3)  <-------TEIL  <---   ggtgcgatctaatggcgaaagttcgaaacaaaagcacgatttcgatataaatgccgagttgttcaacagtcaatggttttgtaggtactttacacacatc  8391400  Previous    Next  AGI:  At2g19360.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17750.1); similar to hypothetical protein OsJ_022550 [Oryza sativa (japonica cultivar-group)] (GB:EAZ39067.1); similar to Os07g0205500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059148.1); contains InterPro domain Protein of unknown function DUF239, plant (InterPro:IPR004314) Range:  from: 8385746    to: 8390456    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g19380.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G22100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65308.1); contains InterPro domain Zinc finger, C2H2, LYAR-type (InterPro:IPR014898); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604) Range:  from: 8390938    to: 8393686    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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