Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                        <---------YAB1                                            <--                                     --------->GLK1(2)                                <---------YAB1                                    --------->ARR14(2)                            <---------GLK1(2)<-                                    <---------ARR14(2)                 --------->At4g35610   <------- <---------YAB1                     <---------GLK1(2)                  <---------At4g35610  <-------- -->TOE1(3)                     --------->At4g35610           ----------->GT1     --------->ARR11(3) -->TOE2(3)    <----------DOF2  <---------At4g35610 ------>NtERF2     --------->MYB52(1)    <--------   aatatgattccccattactttcggtcttctgttcagcagattctgaatgtataccgccagtagaaggaaaatcaactgattttagattttgatggctttg  8298500                          <-------PIF5                          ------->PIF5           <---------ZAT14                         --------->ZAT2          --------->REM1(2)                         --------->At4g35610  <---------ANAC58     <----------DOF2   <-----------RAV1(2)    <---------ANAC46    <---------ANAC58  <---------ZAT2 --------->ZAT18    <---------ANAC58  <---------At4g35610     <---------ANAC58 -------ANAC58        --------->ZAT2 <---------ZAT14                                            <---- -------ANAC58        --------->At4g35610 <---------ZAT14                           --------->ALFIN1 ---------DOF2      ---------->CDC5  --------->ZAT14                                <---------REM1(1) ---DOF2            <-----------RAV1(2)   --------->ZAT14                        <---------TOE1(2)--- -ANAC58        --------->AtLEC2 <-----------GT1--------->ALFIN1                ------>ZmHOX2a(1) --- -ANAC58    ------>ZmHOX2a(1)    --------->MYB52(1)               ---------->DOF2<---------TOE2(2)---   gctttggctttctcctccatgctcagcaggtggattaactgcactggagcgtgtagggacagcctgtgcaaagttctgtctcctaggtgtagatgtatta  8298600                      <-----------------AGL3                      ----------------->AGL3                 <---------ARR11(3)           <---------ANAC58                                      <---------ICU4       <---------ANAC58--------------->AGL15                   ----------->RAV1(1)       <---------ANAC58<---------------AGL15             <----------DOF2      --------->ZAT2  ----------------->AGL1            <---------ANAC58 -------GT1<---------ANAC58   <---------TOE2(3)         <---------ANAC58                         ---- ------------>AtSPL8  ----------------->AG           <---------MYB52(1)              ------>ZmHOX2a(2) ------------>AtSPL3  ----------------->AGL2       <---------ANAC58           <-----------RAV1(1)<--- ------>ZAT6     --------->ARR11(3)                <---------ANAC58       <----------DOF2 <----------DOF2   acagtacctgcttgcttaacatcttccaaattaagaaacctagtctgcctatttcgtttctttcccaacattgcctctttatgttgatccatctttctct  8298700                                           <----------DOF2      <---------ZAT6             <---------ANAC58                                        <---------CCA1(2)  <---------ZAT14                <---------ANAC58                                   <---------At4g35610  --------->ZAT14            <---------ANAC58                          ----------->RAV1(2) ----->ZAT14                 <---------ANAC58 <-----------GT1--------->REM1(1)<---------ANAC58 ------ZAT14       <-----------GT1  --------->REM1(1)    --------->At4g35610  <---------ANAC58  -----   tcactgtagtattagcacatttaactgcataacttgcttcaactcctttaacttctctctgcttcaccatcaaacctggttcttgtagctcatctctaac  8298800                                                   <---------ARR14(2)                                                   --------->ARR14(2)                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                          <---------ARR11(3)                                          <---------AGP1                                          --------->ARR11(3)                     <---------ALFIN1                     --------->YAB1       <---------ARR14(3)                   <-----------HVH21                    <---------ATHB12      --------->AGP1                      --------->WOX13(1)         ----------->RAV1(1)              --------->ARR14(2)               <---------ARR14(2)        --------->AtMYB61                 <---------ARR14(2)               --------->GLK1(2)        <---------ALFIN1                  --------->ARR14(3)               --------->ARR14(2)       --------->MYB46(3)               ----------->ARR10              --------->YAB1     --------->REM1(1)        --------->REM1(2) <---------ANAC46    --------->YAB1    <-----------GT1 ---->ZAT6          <---------YAB1    ---------->DOF2  <---------YAB1 --------->At4g35610   actgccttcaccaccagtttctatcattcccttgtagtcagaaagatcttgtgtattctccttggcactagcatcagaatccatcacttcaccttcttat  8298900                                 ------------>CBF                      <---------ICU4              --------->ANAC58   <-------TEIL   <---------MYB46(3)    <---------YAB1              --------->ANAC58  --------->CCA1(2) <--------P         <-----------GT1    <---------ICU4             <---------ARR14(2) <---------WOX13(1)--------->YAB1    <---------GLK1(2)          --------->ARR14(2)<-------GAMYB   --------->TOE2(3)   --------->ICU4     <---------ANAC58       <----------DOF2   <---------TOE2(3) --------->YAB1       <---------ANAC58--------->YAB1          <-----------GT1                    ----   ctgtcataatctccacaagtattagcgtttgcagatacaataacattctttggttgattcaaattaacatttatcatttccatcagcatctatagaaact  8299000                                             <---------ZAT14                                             --------->ZAT14                                          --------->At4g35610                                          ------>ZmHOX2a(1)                                     --------->GLK1(1)                                    <---------ARR14(2)                                    --------->ARR14(2)                                    <-----------ARR10                                    <---------ARR11(1)                                 <---------ANAC58                                 --------->ANAC55(2)                   ---------->DOF2 <---------CCA1(2)                  --------->AHL20(2)------->TEIL                        --------->TOE1(3)         --------->ANAC55(2)     <---------bZIP60(2)          <---------At4g35610         ----------->GT1         <---------ANAC55(1)          --------->At4g35610         --------->ANAC58        <---------ANAC58             <---------ZAT14         --------->ANAC58        <---------ANAC55(2)          --------->ZAT14         <---------ANAC55(2)     <---------ANAC46       <---------HSFC1(2)      <------ZmHOX2a(2)         <-----------------------TaNAC69(2)  ---------->DOF2     <---------ARR11(3)         ----------->STF1        --------->HSFB2a(1)     --------->ARR11(3)       ----------->HVH21         <---------HSFB2a(1)    --------->TOE2(3) ----->ZAT14 ------------>CBF ----------->TGA1          --------->HSFC1(2)     --------->TOE1(3) ----   tcactaagatcaagtaacaataaaagaatcaaatgacgtatctcctctgaactacagaagtttctgcagagaaagcttaaacctcaaaatcgaaactaag  8299100                                                                               --------->ANAC46                                                                               --------->ANAC58                                                                --------->ANAC58                                                                <---------ANAC55(2)                                                        <---------ANAC46       --------->ANAC58                               ------->TEIL      ----------->TBP--------->ANAC58             <------ZmHOX2a(2)                      --------->DEAR3(1)         <---------YAB1 --------->ANAC55(1)         <--------                     <---------At4g35610       --------->YAB1   --------->ANAC46  ---------->DOF2  <---------ZAT6     --------->At4g35610      <---------YAB1    --------->ANAC55(2)         --------- ----->YAB1 <------------CBF<---------YAB1 <---------YAB1 <------NtERF2        --------->AtLEC2     -   catagtgatcaaaacattgattcagcgaccatgaatatagaacagatgattataaatggcgcaaacacgcatttgttattcaagcaaagttcaagatcga  8299200                                   <---------ANAC46                                  <------NtERF2                                 <---------DEAR4(2)                                 <---------ERF1                                 <---------RAP2.3(1)                                 <---------ATERF1(1)                                 ------>NtERF2                                <---------DEAR3(1)                                <---------RAP2.3(3)                                <---------ATERF1(2)                                --------->ATERF1(2)                                --------->DEAR3(1)                                <---------RAP2.3(2)                                <---------ANAC46                               <------NtERF2                               --------->DEAR4(2)                               <---------ABI4(1)                               --------->ATERF1(1)                               --------->DREB2C(1)                               --------->RAP2.3(1)                               --------->At4g35610                               <---------At4g35610                              <---------ATERF1(1)                              ------>NtERF2                              <---------ORA47(2)                              <---------RAP2.6(1)                              <---------RRTF1(1)                              <---------DEAR4(2)                              <---------ERF1                                    <<<<<<<<<ARR1                              <---------RAP2.3(1)                         --------->At4g35610                             <---------DEAR3(1)                           <---------At4g35610                             <---------RAP2.3(2)                     <---------ANAC58                             <---------DREB2C(2)                     <---------TGA1a                             <---------RAP2.3(3)                     <---------bZIP60(1)                             <---------RAP2.6(2)                     ================================                             <---------RRTF1(2)                      --------->TGA1a                             --------->DEAR3(1)                      <---------ANAC46                             <---------ATERF1(2)                     <---------ANAC58                             <---------RRTF1(3)                      <---------ANAC55(2)                          <---------DEAR3(1)                         --------->ANAC55(2)     --------->MYB52(1)  --------->SPL7                              --------->O2     ------->TEIL       --------->MYB52(1)                           <---------O2--------->YAB1    --------->MYB52(1) <---------SPL7                                <---------ANAC55(1)            -  <---------MYB52(2) <------NtERF2--------->ATERF1(1)            <-----------HVH21                  - -ARR11(3)          <---------ORA47(2)                       --------->GLK1(2)  <<<<<<<<<ARR2     <-- >ARR11(3)----------->HVH21 <---------ABI4(1)           ---------->DOF2   --------->ZAT18    -------- -------->MYB52(1) <---------DEAR3(1)                   =======================bZIP_DOF    --------->ZAT6   gcaaacgaaccggtaacagagtcggcgaacggcggcggcgagttttagttagggtctaaaaagaatgtgttacgtgagcacaatcgtaatctcactctac  8299300                                                                              <---------PCF5                                                                             ----------->HVH21                                                                          <---------O2                                                                          <---------ANAC46                                                                         --------->ATERF1(1)                                                                         <------NtERF2                                                                        ------>NtERF2                                                                        <---------ATERF1(1)                                                                       <---------DEAR3(1)                                                                       ----------->HVH21                                                                       --------->DEAR3(1)                                                                      <------NtERF2                                                                      --------->ATERF1(1)                                                                      --------->RAP2.3(1)                                                                     <---------RAP2.3(1)                                                                     ------>NtERF2                                                                     --------->LBD16                                                                     <---------ATERF1(1)                                                                    <---------DEAR3(1)                                                                    --------->ATERF1(2)                                                                    <---------ATERF1(2)                                                                    --------->DEAR3(1)                                                                   --------->RAP2.3(1)                                                                   --------->ATERF1(1)                                                                  ------>NtERF2                                                                  <---------RAP2.3(1)                                                                  <---------RRTF1(1)                                                 <---------ARR14(2)<------NtERF2                                             <-------TEIL   --------->At4g35610                                            --------->CCA1(2)     <---------ATERF1(1)         <------   ---------->DOF2              <---------At5g28300         <---------At4g35610          --------->AHL20(2) =============bZIP_DOF         <-----------GT1   --------->ARR14(2)<---------LBD16       <---------AHL20(2) -------->LBD16          --------->ANAC58   --------->ARR14(1)   <---------bZIP60(1)  <---------ARR11(3) ----->NtERF2            --------->ANAC58  <---------ARR14(2)  <---------TGA2(2)      --------->ARR11(3) -------LBD16       ------>NtERF2          --------->ARR11(1) ----------->TGA1------>NtERF2 <-------- ->ZAT14           <---------ANAC46        --------->ARR14(2) ----------->HVH21   --------->LBD16 ---   tccggcaaagtttgtactgtgccgagtacgaaattacagttctaagatacgaattcgtcttccgatgacgccggcgacggggaccggagattttattaaa  8299400  Previous    Next  AGI:  At2g19120.1    Description:  tRNA-splicing endonuclease positive effector-related. similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT4G30100.1); similar to hypothetical protein OsI_031497 [Oryza sativa (indica cultivar-group)] (GB:EAY77538.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65841.1); similar to Putative DNA2-NAM7 helicase family protein [Oryza sativa] (GB:AAL31652.1); contains domain PTHR10887:SF27 (PTHR10887:SF27); contains domain SSF52540 (SSF52540); contains domain PTHR10887 (PTHR10887) Range:  from: 8294118    to: 8298884    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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