Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                 ----                                                                                                 <---                                                                                             <-------                                                                                             --------                       ----------->GT1                                                       <-------                      --------->ANAC58                                               --------->ANAC55(2)                      --------->ANAC58                                               --------->ANAC58                  <---------YAB1                                                     --------->ANAC58                --------->YAB1                       <------ZmHOX2a(2)               --------->ANAC46      <-----------GT1------->TEIL     ======================HOX2a_HOX2a           <-------TEIL<------ ->TOE2(3)     <---------YAB1         <------ZmHOX2a(1)     <-------TEIL    <---------AHL20(2)-------   atagtttttcacaacttatcatgaacgctaaaattcaacaggatgcacagtttcgatccatatacatcgtggttttattttaagtacacgtagttttcat  8258400              --------->AHL20(2)              --------->YAB1            --------->AHL20(1)            --------->AHL20(2)           --------->YAB1         --------->AHL20(2)                                          <-------GAMYB ----------->GT1                                                    <------MYB46(1) ---------------AtSPL8                                              ----------->GT1 ----->ARR14(2)                                                     <------MYB83 ------ARR14(2)                                                     <---------MYB46(3) ----------AGL1                                   <---------YAB1  <--------P --------->AGL3                       --------->AHL20(1)        <-----------RAV1(1) ----------AGL2       --------->ANAC55(2)         ------>ZmHOX2a(1)<---------AtMYB61            ----- ---------AGL15  <---------ICU4      --------->YAB1       <----------DOF2     ------------>CBF <----- -------->AGL15 --------->ICU4  ----------->GT1 --------->YAB1  --------->ALFIN1         ----------->GT1   atatggtagaaaaaaataatatttatgtgataacatgaaaaataatgcaatcctgattcgatttaagtgttggttaattagtcaatacagacggttttaa  8258500                    <---------ARR11(3)                    --------->ARR11(3)                   --------->GLK1(1)           --------->YAB1        --------->WOX13(1)                                              --------->TOE1(3)      ------------>CBF                                                  --------->TOE2(3)   <---------At5g28300 <----------DOF2         <---------ICU4    --------->ANAC58  <-----------GT1  <---------GLK1(1)          <---------YAB1     --------->ANAC58 ------->CBF  ---------->DOF2         <---------ZAT18          ---------->DOF2          --------->GLK1(1) ------GT1<---------ATHB12         <----------DOF2           <---------YAB1  --------->YAB1   caatttacagcaatcaaaaagaaatctttttcatcttctttgcacttcatcatttacaaaaatatgaaagcaaacctaaaaataactcagaattcatctt  8258600                --------------->AGL15                ------>ZmHOX2a(1)                <---------------AGL15                           ---------->DOF2               --------->TOE2(3)                               <---------AHL20(2)              ------               --------->TOE1(3)                             ----------->TBP                  -------         <-----------GT1              ------->TEIL         <-----------TBP               <-----------GT1      <---------ICU4    --------->At4g35610          <------------CBF        <----------DOF2  <------     --------->ICU4     <---------At4g35610     --------->TOE2(3)--------->DAG2   ------------>CBF   ctagctaatttttacatccttaatttagctaaatctaatgcatcttctaacctctaattgtatatataaagtagcccatctttcttcaattttacaacaa  8258700                                                                                                    <                                                                                                -----                                                                                           <------NtERF2                                                                                          -----------                                                                                         --------->ANAC46                                                                                         <---------DEAR3(1)                                                                                        <---------LBD16                                                                                        --------->LBD16                                <---------ARR11(3)                                     <---------ANAC46       ---------->DOF2          --------->ARR11(3)                                     <---------ANAC58   <----------ID1              <---------CCA1(2)                                       <---------ANAC58 ---------->DOF2             ----------->TBP                                     --------->ATHB12 <-- ->GAMYB                 --------->At4g35610---------->DOF2                 <---------ANAC58    <---- -->MYB46(3)  --------------->AtSPL3       --------->AHL20(2)               <---------ANAC58   ------ ---MYB52(2)  <---------------AtSPL8   --------->MYB46(3)             <---------YAB1  <---------LBD16   acaaaaagaaaaagaagaagtactatcagctatatatctcaacaaataaagaaatatgaaggcatgggtgatatgtttgctagtgatttgcgcggcagtg  8258800           <---------ZAT14    <---------ARR14(2)    --------->ARR14(2)  --------->LBD16                                                                                ---- <---------ANAC58                                                                               <---- <---------ANAC55(2)                                                                            <---- --------->ANAC55(2)                                                          --------->ANAC58------- <---------ANAC58                                             ------>ZmHOX2a(1)              ------>NtERF2 ---------LBD16                                       <---------At4g35610 --------->LBD16 --------->LBD16 ---->ATHB12                                        --------->ZAT14      <---------LBD16 <---------LBD16 >RAV1(1)  --------->ZAT14                          --------->ZAT18     <---------LBD16  --------->LBD16 -------WOX13(1)                                    <---------ZAT14    ------>ZmHOX2a(1)<---------LBD16 -----MYB46(3)          --------->AHL20(2)          <---------ZAT18 ------>ZmHOX2a(1) ------>ZmHOX2a(1) --->ICU4 --------->ALFIN1         <---------------AtSPL8    <---------MYB59  --------->ANAC58<------NtERF2   attgcggaaccagtggagagtcggaattacatagaatatggtgcgattaacaagtgcgctggtcctaatcctcctccgggatgcaatcctcccggggccg  8258900                                                                ----------->HVH21                                                              <---------TGA1a                                          --------->At4g35610 <---------ANAC58                                          <---------At4g35610 <---------ANAC46               <-------                                         =============================RAV               <---------YAB1                                   <---------MYB46(3)    --------->ZAT14              --------->YAB1                                  --------->ALFIN1       <---------ZAT14          <---------ANAC46                                 --------->LBD16         --------->ABI4(2)        <---------ANAC58                                <---------ANAC58        --------->ALFIN1          <---------ANAC58        --------->TOE2(3)       <---------ANAC58 <-------TEIL <---------O2       <------------------- ----->MYB52(1)      <---------TOE2(3)   ----------->RAV1(1)  <---------ANAC58 ----------->HVH21 -----SPL7          <---------DOF5.7(2)--------->At4g35610<-----------RAV1(2)<---------O2    -------- --NtERF2         <---------MYB52(1)   <---------At4g35610--------->ATERF1(1)--------->O2<---------ICU4 -->ATERF1(1)     --------->DOF5.7(2)  <------NtERF2 <---------DEAR3(1)------->TEIL  <-------TEIL   aacagaagaaccctaatcccgttaacgaatatagccgtggctgcagcaaaattcatcggtgcaggcgtgactgaacccgaagtgacgttcatcatttaaa  8259000                                  <----------DOF2                                 <---------ANAC58                                 <---------ANAC58                            <---------ARR14(2)                            ------->TEIL <-------TEIL                                              <-                            --------->ARR14(2)                                              ---------        <---------CCA1(2)<---------ANAC55(2)       <-------TEIL                         --------->AHL20(2)     ------>ZmHOX2a(1)   --------->ANAC55(2)   <-------TEIL--------->ARR14(2)           --------->AHL20(1) --AHL20(2)             ------->TEIL    --------->AtLEC2   <---------ARR14(2)           <---------AHL20(2) ----TaNAC69(2)     <---------------AtSPL3   <---------ARR14(2)             <---------ANAC46<-------- ->AHL20(2)         --------------->AtSPL8   --------->ARR14(2)         <----------DOF2--------->AHL20(2)   ctgattcctcatctctacgaactctgtacgtatttgctttacatgcatatacatacactcgtatatgcaaggtgttttatgtgtatcaaattaattaata  8259100               --------->ATHB12              <------ZmHOX2a(2)                      --------->AHL20(2)              <---------YAB1                         <---------AHL20(2)             <---------ARR11(3)                  ----------->GT1         ------>ZmHOX2a(1)              <-----------GT1                   --------->WOX13(1)        <        --------->TOE2(3)            --------->AHL20(1)        --------->DAG2                 <------  <---------YAB1                     --------->ARR11(3)      <---------AHL20(2)              -------- --------AHL20(2)       <---------AHL20(2)  --------->MYB52(1)---------->DOF2                <------- >AHL20(2)   --------->ARR11(3)      <---------ARR11(3)  <---------AHL20(2)                  <------- -AHL20(2)  <---------At4g35610     --------->AHL20(2)   --------->AHL20(2)      <----------DOF2   <-   gtttattaatcctcagatcattgtattaaaaatatcaaatatatactaactgtgttaaattatataaagtgttcatcaatctcctttacatctaattttt  8259200                                               --------->ZAT6                                          --------->YAB1                                        <---------WOX13(1)          <---------ARR11(3)      --------->GLK1(2)          --------->ARR11(3)     --------->ARR14(2)                                             -----      <----------DOF2            <---------ARR14(2)                                             ----- -----------GT1                  <---------GLK1(2)                                          <------ZmHOX2a(1) ---AHL20(2)           --------------->AGL15 --------->YAB1                                <--------- ->AHL20(2)            <---------------AGL15<---------YAB1                              ---------->DOF2 --AHL20(1) ------>ZmHOX2a(2)   <------ZmHOX2a(1)                                   --------->ANAC46 --AHL20(2) ===========================HOX2a_HOX2a                                  --------->ANAC58 ----------GT1         --------->YAB1<---------YAB1       ----------->GT1           --------->ANAC58   tttatcggctttgatcttatactaactataactaggattctgatttataatactataaactggaaaatttgtaagaaaacaactagacgcaaaaggacta  8259300  Previous    Next  AGI:  At2g19045.1    Description:  RALFL13 (RALF-LIKE 13). similar to RALFL11 (RALF-LIKE 11) [Arabidopsis thaliana] (TAIR:AT2G19030.1); contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 8258756    to: 8258974    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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