Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------YAB1                                     --------->AHL20(2)                                     <---------AHL20(2)                                    <---------AHL20(1)           ----------->GT1                        <---------AHL20(2)  <---------HSFB2a(2) --------->ANAC58                 <---------TOE2(2)  <---------AHL20(2)          --------->ANAC58    --------->MYB52(2) --------->AHL20(2)   --------->HSFB2a(2)------->TEIL  <--------P--------->MYB52(1)      --------->AHL20(2) <---------At4g35610            --------->ANAC46 ---------->GT1  ------->TEIL  --------->TOE2(3)    ---------->DOF2                <---------REM1(2)   tatggttagtagacaaacgtatgtattaaatagcctaaattatttttcagaacttatagctcatgaacgctaaaattcaacagattacacggtttcaacc  8256600                          --------->ANAC58                          --------->ANAC46                          --------->ANAC55(1)                          --------->ANAC55(2)                ------>ZmHOX2a(2)                          --------->ANAC58                  <---------GLK1(1)                          <---------ANAC55(2)              <---------AGP1 <---------YAB1                       <---------ZAT18                     <-----------ARR10                       --------->ZAT14                     --------->ARR14(3)                       <---------ZAT14                     <---------ARR14(3)            <----------DOF2        --------->YAB1          --------->ARR11(3)               <--------           <---------ANAC58       <---------YAB1           <---------ARR11(3)               ------>ZmHOX2a(1)           <---------ANAC58    --------->ICU4              --------->ARR14(2)               ---------      --------->MYB52(1) ------->TEIL                      <---------ARR14(2)   --------->AHL20(1)      <---------ICU4   --------->ZAT18              ---------->DOF2--------->YAB1         --------->YAB1   --------->YAB1 <---------AHL20(2)      --------->AHL20(2)<------ZmHOX2a(2)  --------->YAB1<-------   cataaacataatggctttatttaagtgcacgtaattttcatagtttatatataacaaagaagatctcagtcataatatgaaaaataatgcaatcctgatt  8256700                          ----------->GT1                                  --------->AHL20(2)                          <------MYB83                                     <---------AHL20(2)                          <------MYB46(1)                       ------------>CBF                        <--------P                          <-----------GT1----------->TBP                      <---------REM1(1)           ----------->GT1    --------->AHL20(2)                      --------->ALFIN1          <-------GAMYB<---------At5g28300 -YAB1         <---------WRKY18(1)             <---------MYB46(3) --------->WOX13(1)                - >ICU4      <---------ANAC58     <---------AHL20(2)   ------------>CBF   --------->YAB1         <---- --ICU4     <---------ANAC58     --------->AHL20(2)  <-----------GT1<---------ATHB12      <---------ZAT18   acatttttgtttttccttgactaagtgtaggttaattaatcgatatagacggttgtaacaatttacagcaatcaaatataaatctcatcttgttcacact  8256800                                                                                             <-------                                                                                             --------                                                                       ------>ZmHOX2a(1)     ------->TEIL                           --------->TOE2(3)                          --------->TOE2(3)      <-------                           --------->TOE1(3)                          ----------------->AGL3 --------                    --------->ANAC58                            <-----------GT1             <--------  ------------>CBF  --------->ANAC58                           <-----------GT1 --------->At4g35610 --------->ID1    ---------->DOF2          --------->GLK1(1)  <---------AHL20(2) ------------>CBF ------DOF2     <---------YAB1  --------->YAB1--------->YAB1 --------->YAB1    <---------At4g35610   ttgtctcaatacaaaaatatgaaagcaaacctaaaaataactcagaattcatcatctagctaattttaacgtccttaatttagctcaatctagtgtatct  8256900                    <---------AHL20(2)                  ----------->TBP                --------->AHL20(2)                <---------AHL20(2)                                               <---------ARR11(3)      <----------DOF2---------->DOF2                                             --------->ARR14(2) --ARR14(2)     ----------->TBP                 --------->ANAC46 <---------------AtSPL8 ->ARR14(2)   ----------->TBP                   <----------ID1   --------------->AtSPL8 --ARR11(3)   <---------AHL20(2)              <-----------GT1    --------------->AtSPL3 ->ARR11(3)   --------->AHL20(2)    ---------->ID1     ---------->DOF2           --------->ARR11(3) -CCA1(2)   ----------->TBP  <-------TEIL  <---------ICU4     >>>>>>>>>TBF1 ------------>CBF --------   tctaatctctttgtatatatatataaagaagtccatttgtcttcatttttacgacaaaaaagaagaagaagtactatcaacaatatctccataaataaag  8257000                                                  <---------ANAC58                                               <---------WOX13(1)                                             <---------MYB46(3)                                       <---------ANAC46                                       <---------O2                                       --------->DEAR3(1)                                      <------NtERF2         --------->ZAT14                                     ------>NtERF2--------->ANAC55(2)                                 ------>ZmHOX2a(2)<---------ANAC55(2)                                <---------At4g35610  <---------ARR14(2)                                --------->At4g35610--------->LBD16                              <---------ZAT14--------->ATHB12                         <---------ANAC58   <---------YAB1  <---------ZAT14                         <---------ANAC58--------->ALFIN1  --------->ALFIN1                   <------MYB46(1)  --------->ANAC46 --------->ARR14(2)                   <------MYB83<---------ARR11(3) <---------ANAC58                  <---------------AtSPL8 -->DOF2      ----------->HVH21--------->ARR11(3)<---------LBD16         --------->AHL20(2)         -   aaatatgaaggcatgggtgataggtttgctagtgatctgcgccgtggtgattgcggaaccagtggagagtcggaattacatagaatatggtgcgattaac  8257100                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                       --------->LBD16                                    ===========                                      --------->ANAC46                                    -----------                       --------->LBD16<---------LBD16                               <---------MYB46(3)           ------>ZmHOX2a(1)          --------->LBD16                              --------->ALFIN1          <---------MYB59             --------->HSFB2a(2)                         --------->LBD16     <---------ATERF1(2)              <---------HSFB2a(2)                        <---------ANAC58     --------->ATERF1(2) <------ZmHOX2a(1)                                       <---------ANAC58 <--  --------->ALFIN1    <-----------RAV1(2)    <---------ZAT14       --------->DOF5.7(2)  <------NtERF2 --------->ZAT18    ------>ZmHOX2a(1)<---------LBD16               <---------MYB52(1)   --------->At4g35610 -------->ALFIN1 ------>ZmHOX2a(1) ------>ZmHOX2a(1)  <-----------GT1<---------DOF5.7(2)<---------At4g35610   aagtgtgccggtcctaatcctcctccaggatgcaatcctcccgggactgaacaaaaaaaccctactcccgttaacgagtatagccgtggctgcagcaaaa  8257200                                                                               <----------DOF2                                                                              <---------ANAC58                                                                              <---------ANAC58       <-----------RAV1(2)                                           <---------ARR14(2)       --------->ATERF1(1)                                           <-----------ARR10      --------->ZAT14                                                <---------ARR11(1)      <---------ZAT14                                                --------->GLK1(2)      --------->ABI4(2)                                              ------->TEIL         <-------MYC2     --------->ALFIN1                                                --------->ARR14(2)   ------->MYC3  <---------DEAR3(1)             <-------TEIL                       <---------ARR14(1)    <-------MYC3 ==================RAV--------->TOE2(3)                    <---------ATHB12 <-----------GT1 >RAV1(1)    <------NtERF2  --------->YAB1 <---------AHL20(2)       <---------GLK1(2)     ------->MYC2 -----TEIL  ------>NtERF2  --------->ICU4 --------->AHL20(2)        <---------CCA1(2)--------->AtLEC2   ttcatcggtgcaggcgcgattgaaccgtaatgatgttcatcatataaaattcttcatttcaatgagccccgaatctatttgcttttcatgcatatgcata  8257300                                                    --------->ICU4      --------->ATHB12         <---                                                   <---------YAB1      <---------YAB1 --------->CCA1(2)                                               --------->ANAC55(2)     <------ZmHOX2a(2)        -----            ---------->TaMYB80                 <------MYB83           --------->ARR11(3)      <------            --------->ARR14(2)                 <------MYB46(1)        <---------ARR11(3)      -------            <---------ARR14(2)                 <---------ANAC55(2)   <---------At4g35610     --------         <---------ANAC46                     <---------TOE2(3)   ------>ZmHOX2a(1)   --------->GLK1(1)         <---------ANAC58                     --------->MYB59    --------->TOE2(3)   <---------ARR11(3)         <---------ANAC58                --------->AHL20(2) <---------KAN4(1)        --------->ARR11(3)    --------->ARR14(2)   <----------DOF2<---------ATHB12    --------->KAN4(1)    ---------->DOF2<----   cacttgtatatgcgtatatgcaaggtgttttatgtgtttcaaatgaattaggtattaatggattaatcctcagatcattgtatcaaagatatcaaatata  8257400                              --------->AHL20(1)                              <---------AHL20(2)                              <---------AHL20(1)                              --------->AHL20(2)                           -------->HAHB4                           <--------HAHB4                           <---------ICU4                           --------->ATHB51                           --------->YAB1                           <--------ATHB1                          --------->AHL20(2)                          --------->ICU4                          <---------ATHB51                        --------->YAB1                       <---------YAB1                      --------->AHL20(2)                      <---------AHL20(2)                      <---------AHL20(1)                      --------->AHL20(1)                     --------->YAB1                    <---------YAB1                  <---------ICU4                  -------->ATHB1         --------->ATHB12 <---------YAB1    <---------YAB1--------->YAB1                                                  <------ZmHOX2a(1) ------AHL20(2)  <---------AHL20(2)                                         <---------ANAC58 ---->AHL20(1)   --------->AHL20(2)                 ------>ZmHOX2a(1)       <---------ANAC58   <----- ---AHL20(1)     <---------ATHB51           --------->ZAT6              ------>ZmHOX2a(1)  --------->ARR14(2) -->AHL20(1) --------->AHL20(2)             <-----------GT1             <----------DOF2    <---------ARR14(2) ->AHL20(2)  <---------AHL20(2)           <-----------GT1      <-----------GT1  <---------TOE2(3)<--- -----AHL20(1)   --------->ICU4      <---------ZAT6--------->TOE2(3) ---------->ID1---------->DOF2   tattttgttattgatttaaattattataataattaattagtgtttatcactctccttagtttatattactagtccttttcttgaggaaagacgtttctgc  8257500  Previous    Next  AGI:  At2g19040.1    Description:  RALFL12 (RALF-LIKE 12). similar to RALFL11 (RALF-LIKE 11) [Arabidopsis thaliana] (TAIR:AT2G19030.1); contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 8257005    to: 8257223    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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