Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->ANAC55(2)                                                                             --------->ANAC46              <---------bZIP60(1)                                            --------->ANAC58              --------->bZIP60(1)                                            --------->ANAC58 -------->AHL20(2)                                                      <----------DOF2 ---------AHL20(2)                                                <-----------GT1                ---- -->DOF2   <---------YAB1                                    <---------GLK1(2)                   <---   aaataaatgtattgtgatgacatatatgaccaaaacaaattggaagtcaaaaccagagaagtagaatttcactgcttttacgaaatacaaaacatatttc  8254500                                                        <---------AHL20(1)                                                        <---------AHL20(2)                                                       --------->AHL20(2)                                                   ------>ZmHOX2a(1)                                                   <---------YAB1                  <---------ARR11(3)           --------->ARR14(2)                  --------->ARR11(3)           <---------ARR14(2)                  <-----------ARR10           --------->GLK1(1)            --------->ANAC58                  <---------GLK1(1)        <---------ANAC58        --------->AtLEC2                 --------->MYB52(1)<---------AHL20(2)        <---------MYB46(3) ----------------->WRI1   --------->YAB1 <-----------GT1--------->AHL20(1)        <------------CBF -------DOF2--------->ANAC58      ----------->GT1  --------->ICU4      <---------ANAC58        ------   tttgtttttaatgcaaacaatatctcagtcataacatggaaaataacgaaatcctgattatatttttgttatttcttgactaagtattggttaactagtc  8254600                                                                                 --------->ANAC58                       ------------>CBF                                          --------->ANAC58                   <-----------GT1                                     <---------AHL20(2)             ------------>CBF      <---------ARR11(3)                  --------->AHL20(2)         ----------->GT1           --------->ARR11(3)          ------------>CBF---------->DOF2       <-------GAMYB<---------At5g28300           <----------DOF2   --------->AHL20(2)  --------->TOE2(3)      <---------MYB46(3)          <---------GLK1(1)          ---------->ID1  <---------YAB1  -------- ------>CBF <-----------GT1       --------->GLK1(1)  <---------ZAT18--------->YAB1      --------->TOE1(3)   aatatagacggttgtaacaatttacagcaatcgaagaaatctttctcatcttctttgcacttcgtctcaataaaaaaatatgaaagcaaacctaaaaata  8254700                                <---------------AGL15                                --------------->AGL15                                ------>ZmHOX2a(1)                         <-----------GT1                                       --------->DAG2                        <-----------GT1 <---------At4g35610                   ---------->DOF2                       <---------AHL20(2)                                  ----------->TBP               --------->ANAC58--------->TOE2(3)      ------->TEIL       <-----------TBP    --------->GLK1(1) --------->YAB1    --------->At4g35610  <-----------GT1 <---------AHL20(2) ----- ->YAB1        --------->ANAC58--------->TOE1(3)   <---------ATHB12<----------DOF2         <---------   actcagaattcatcttcaagctaattttaacatccttaatttagctaaatctaatgaatcttctaacctctttgtatatataaagtagcccatctttctt  8254800                                                      <---------TOE2(3)                                                     ---------->DOF2                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                   <---------YAB1                                                 <--------ATHB1                                                 <---------ICU4                                                 --------->ATHB51                                   <                                                 <--------HAHB4                                    --                                                 --------->YAB1                                   <--                                                --------->AHL20(2)                                ---                                                <---------ATHB51                                 <---                                                --------->ICU4                                   ----                                            ------------>CBF                                    <----                                           --------->TOE2(3)                                    <----       --------->ANAC46                  --------->ARR11(3)                                     <----       --------->ANAC58                  <---------ARR11(3)                          <---------ANAC58   <-----------GT1                      <---------CCA1(2)                            <---------ANAC58 ------->CBF         ---------->DOF2--------->At4g35610                        <---------YAB1  <----- -DOF2 --------->ANAC58  <---------------AtSPL8 <---------ATHB12         <---------ANAC46 --------->ATHB12   caattttacaagaaacaaaaacaaaaagaagtactatcagctatatctcaataattaaagaaatatgaaggcatggctgatatgtttgctagtgatttgc  8254900           --------->LBD16          <---------ANAC58          <---------ANAC55(2)          <---------ANAC58         <---------LBD16       <---------WOX13(1)     <---------MYB46(3)     --------->ATHB12    --------->ICU4 ------NtERF2 --------->RAV1(1)                                                                 --------->LBD16 -------DEAR3(1)                                                                  <---------LBD16 ------>ANAC46                                                         ------>ZmHOX2a(1)           -- ------LBD16        --------->ZAT14                              <---------ATERF1(2)              --- ----->LBD16        <---------ZAT14                              --------->ATERF1(2)   --------->ANAC58 -----ANAC46       --------->ALFIN1                           --------->ALFIN1   <---------LBD16  <-- -----ANAC58 <---------ARR14(2)                              --------->ZAT18    ------>ZmHOX2a(1)<--- -----ANAC58 --------->ARR14(2)             <---------------AtSPL8    <---------MYB59  --------->ANAC58 ----LBD16--------->ANAC55(2)    --------->AHL20(2)         --------->ALFIN1 ------>ZmHOX2a(1) ------   gcggcagtgattgcggaaccagtggagagtcggaattacatagaatatggtgcgattaacaagtgtgccggtcctaatcctcctccgggatgcaatcctc  8255000                                                   <---------At4g35610          ---------->DOF2                          --------->At4g35610     <------NtERF2                                =============================RAV   --------->ATERF1(1)                      <---------MYB46(3)    --------->ABI4(2)   <-----------------------TaNAC69(2)      --------->ALFIN1       --------->ZAT14   <------NtERF2                          --------->LBD16         <---------ZAT14  ------>NtERF2                          <---------ANAC58        --------->ALFIN1 ------->LBD16                           <---------ANAC58 <-------TEIL   <------NtERF2 ------>LBD16                <---------DOF5.7(2)--------->At4g35610<-----------RAV1(2)        ------- -------LBD16              <---------MYB52(1)   <------NtERF2 <---------DEAR3(1)             <-------TEIL ------LBD16               --------->DOF5.7(2)  <---------At4g35610--------->ATERF1(1)      <-------- >ZmHOX2a(1)    <-----------------------TaNAC69(2)----------->RAV1(1)   ------>NtERF2 <---------SPL7   ccggggccgaacaaaagaaccctactcccgttaacgagtatagccgtggctgcagcaaaattcatcggtgcaggcgcgattgaaccgtagtaccgttcat  8255100                                       <----------DOF2                                      <---------ANAC58                                      <---------ANAC58                                 --------->ARR14(2)                                 ------->TEIL                                 <---------ARR14(2)                              <---------ANAC55(2)                              --------->ANAC55(2)                              --------->ANAC58                          ---------->TaMYB80                              --------->ANAC58                          --------->ARR14(2)                             --------->SPL7             <-------TEIL    <---------ARR14(2)   <---------AHL20(2)        ------->TEIL         --------->ARR14(2) <---------ANAC58               -  --------->AHL20(2)         <-------TEIL         <---------ARR14(2) <---------ANAC58               < -->YAB1                   <---------SPL7    --------->AtLEC2        <---------ANAC46               - -MYB52(1)         <---------ATHB12 <-----------GT1 <-------TEIL--------->ARR14(2)                 --   catataaaattcttcatttcaatgagccccgtacgtatttgcttttcatgcatatacatacacttgtatatgcgtatatgcaaggtgtttatgtgtttca  8255200                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(1)                                                                                      <---------AHL20(1)                                                                                      --------->AHL20(2)                                                                                   --------->ATHB51                                                                                   --------->YAB1                                                                                   -------->HAHB4                                                                                   <--------ATHB1                                                                                   <---------ICU4                                                                                   <--------HAHB4                                                                                  --------->AHL20(2)                                                                                  --------->ICU4                                                                                  <---------ATHB51                                                                                --------->YAB1                                                                               <---------YAB1                                                                              --------->AHL20(1)                                                                              <---------AHL20(2)                                                                              --------->AHL20(2)                                                                              <---------AHL20(1)             <---------TOE2(3)                                               --------->YAB1          <---------YAB1                             <---------AHL20(2)     <---------YAB1      <------MYB83                                  --------->AHL20(1)    --------->YAB1      <------MYB46(1)                             --------->AHL20(1)      <---------ICU4      --------->ANAC55(2)                         <---------AHL20(1)     <---------AHL20(2)      <---------ANAC55(2)                        --------->AHL20(2)      <---------ATHB51     --------->MYB59                     --------->ARR11(3)              --------->AHL20(2)     <---------TOE2(3)                   <---------ARR11(3)          <---------AHL20(2) -------->AHL20(2)                    <---------TOE2(3)              --------->AHL20(2) ---------AHL20(2)                   ---------->DOF2<---------AHL20(1)   --------->ICU4             - -------->AHL20(1)       ------>ZmHOX2a(1)--------->CCA1(2)      --------->ATHB12 <---------YAB1  <-- ------->AHL20(2)       --------->TOE2(3)--------->ARR11(1) <---------YAB1-------->ATHB1     <-------   aattaattaggtattaatgtattaatcctcagtttgtattaaagatatgaaatatatattttgttattgatttaaattattataataattaattagtgtt  8255300                                                                                             <-------                              --------->ARR14(2)                                        --------->AHL20(2)            --------->AHL20(2)<---------ARR14(2)                             <---------ARR14(2)      --------->YAB1          --------->ARR11(3)             ----------->GT1 --------->ARR14(2) -------->ZAT6<---------AHL20(2)                     --------->ZAT6          --------->GLK1(2)      - ---------GT1 --------->AHL20(2)    <----------DOF2<-----------GT1           --------->ARR11(3)     - --ZAT6  --------->AHL20(2)  <---------CCA1(2)  --------->YAB1               <---------ARR11(3)     -   tatcactctcataaatttatattcaaaacttatatctgctttgattcgatttataacactatcaagttataagctagaaaatctgtaagaaaaaataact  8255400  Previous    Next  AGI:  At2g19030.1    Description:  RALFL11 (RALF-LIKE 11). similar to RALFL13 (RALF-LIKE 13) [Arabidopsis thaliana] (TAIR:AT2G19045.1); contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 8254865    to: 8255083    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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