Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <---------ANAC58                  -------->P                         <---------ARR14(2)               <---------MYB59                       <---------ARR11(3)                  ------------               <---------DAG2                        --------->ARR14(2)      <---------AHL20(2)               --------->TOE2(3)       --------->LBD16   ------>ZmHOX2a(1) <---------RVE1(1)               --------->TOE1(3)   <---------ARR14(2)--------->ARR11(3)    <---------CCA1(1)    --------->TOE2(3)           <<<<<<<<<GATA-1     --------->RVE1(1)     --------->ARR11(3)------>MYB83 ---------MYB52(1)--------->MYB52(1) <---------LBD16--------->CCA1(1)     <---------ARR11(3)------>MYB46(1) -GT1       <-----------GT1    <-----------GT1 --------->ANAC46   <---------ANAC58     <-----------GT1   ccggtttcttaattttaccttaccggtttagtttatctatccggtttacacaaaatatcctgtaagtttcttatgagatttttttggttttaccaaatga  8204800                       --------->AHL20(2)                       <---------AHL20(2)                --------->ATHB12              <---------AHL20(2)                   <---------YAB1                           <--------       --------->GLK1(2)                         --------->YAB1               <---------ANAC58   --------->YAB1  --------->ATHB12          <---------AHL20(2)               <---------ANAC58 ----->AG     <---------YAB1  --------->TOE2(3) <---------YAB1               <---------ICU4 ---------   gtgtattagaatcagttttattgatttaaaaacattagaaacttgaatttatcatgaaaccattgcatccaaaacccaattcttgctcatcgaaacgttc  8204900                                           <-----------GT1                                          <-----------GT1                                       --------->AHL20(1)                                         <--                            --------->ANAC58                          --------->At4g35610        ----             ----------------->AGL3    <---------AHL20(1)     --------->MYB46(3)                 ----        <---------------AGL15          <---------ARR11(3)   ----------->RAV1(1)                 <----      --------->At4g35610   --------->ANAC58               <----------ID1                  --------->ANAC58      <---------At4g35610   --------->ANAC46  ------>ZmHOX2a(1) ---------->DOF2    <---------ANAC58   <----------DOF2--------->YAB1   --------->YAB1     <---------HSFB2a(2)          <---------ANAC46 -HSFB2a(1)--------->ARR14(2)     <---------ATHB12    --------->HSFB2a(2)          <---------ANAC58 - >HSFB2a(1)<---------ARR14(2)   --------->WOX13(1)    --------->HSFC1(1) <-------TEIL      --------->ANAC58   tccgtctttgctgaatccagtaatagcttcaagccaatcaatattttcctcttcttctagagcaacaaaagccgatgcatagttggcttgagcaagacat  8205000          ----------->RAV1(1)          <------NtERF2          ------>NtERF2         --------->ANAC58         --------->ANAC58         --------->ANAC46       --------->ATERF1(1)      ------>NtERF2           --------->HSFB2a(2)   <---------ZAT14            <---------HSFB2a(2)   <---------At4g35610  --------->ANAC58                      <---------ARR11(3)                  <--   --------->ZAT14      --------->ANAC58                      --------->ARR11(3)                ----- -------SPL7           --------->ZAT18               --------->TOE2(3)                          ----- ----->TOE1(1)         <---------ZAT18               <-------GAMYB                  --------->ANAC46 ----->TOE2(1)       <---------SPL7                 ----------->GT1                ------->GAMYB----- -----------AtSPL3 <---------------AtSPL3 <---------O2     <-----------GT1        <---------ALFIN1--- -------->SPL7     <---------------AtSPL8 --------->O2  --------->YAB1   ---------->DOF2   <---------   cgtactgcagcccgccagaatggtgtacgcttcgggacatcaagacgtctaagagcgttaataacatcttgatacaaaagtacaacaccccgtctttcac  8205100                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                --------->ARR11(3)                                <--     --------->LBD16                         <---------WOX13(1)                                   ---    <---------ANAC55(2)                    --------->ATHB12                --------->HSFB2a(2)    <--    --------->ANAC55(2)                    --------->YAB1                  <---------HSFC1(1)     <--   <---------LBD16                         <--------ATHB1                  <---------HSFB2a(2) <----- -------ARR14(2)                          <---------ATHB12             --------->ANAC58  --------->ZAT18 ---->ANAC46                              <---------YAB1         <---------ANAC58        <---------ZAT14 ---->ANAC58                        <----------DOF2              <---------ANAC58    --------------->AtSPL8 ---->ANAC58                     --------->ANAC58            <--------P--------->ANAC58  --------->ZAT14 ------>ARR14(2)  --------->ZAT6 --------->ANAC58         <---------TOE2(3)--------->HSFC1(1) <------ -DOF2    ---------->DOF2     <------ZmHOX2a(2) <---------ARR11(3) --------->AtLEC2  <---------------AtSPL8   gatactccgtaataaagtttccactattttcgatcacgctttcaatgatagaccttcttcgaggttgccttgcacgtctagaagaagtttgtacactgtt  8205200           --------->ANAC58  <---------ANAC46           --------->ANAC58<---------MYB46(3)         <-----------GT1   <------MYB46(1)      <---------ZAT6       <------MYB83 -------ANAC46            <---------DEAR3(1) -------bZIP60(2)         --------->ALFIN1 -------ANAC55(2)         <---------AtMYB61 -------ANAC58          <---------ANAC58                                                     <------- ------>ANAC55(2)       <---------ANAC46        <---------ANAC58                             <------- -------ANAC58          <---------ANAC58        <---------ANAC58                     ---------->DOF2 -------ANAC55(1)      <---------MYB46(3)       <---------ANAC46                   ------>ZmHOX2a(1) ----MYB52(1)         <---------ANAC46    --------->ARR11(3)                      --------->TOE2(3) -----HVH21--------->ANAC55(2)          <---------AHL20(2)   <--------P      <---------MYB52(2)  ----   acgtgtttgtgttacgccttggttttgggtggtgtctgccatataatcttgtgtgtttagagggtagacatcatcttcaactatcctaaaagacgcttta  8205300                                                      <----------DOF2                                               <---------ARR14(2)                          --------->WRKY18(1)  --------->ARR14(2)                                 <-- --DAG2                  <-----------HVH21     <---------MYB52(1)   ---------->DOF2             ----- ---DOF2             ---------->DOF2       <---------At4g35610   --------->ANAC58               <---- ----->AtLEC2 <----------DOF2              <---------LBD16       --------->ANAC58              ------   tgcaaatggaagaaggcttttactaaaggtcaaaccacatttttctgcggttttgtctttgctctgcaagtaaagtttttatgtgaaacaaaaactaatt  8205400                                                                                                    x                                                                                                   xx                                                                                                   xx                                                  <------MYB83                                   <xxx                                                  <------MYB46(1)                                <xxx                                    <---------AHL20(2)                                          <xxxx                                   <---------AHL20(2)                                          <xxxxx       <---------YAB1      <------------CBF      --------->MYB59                              <xxxxxx   <---------TOE2(3)   --------->TOE2(3)        <--------P                                  <xxxxxxxx -------YAB1           --------->YAB1       <---------ANAC58                               <xxxxxxxxx ---->YAB1            ----------->GT1       <---------ANAC46               --------->ARR11(3)<xxxxxxx -----ICU4           <---------TOE2(3)      <---------ANAC58           <-----------GT1   xxxxxxxxxxxx --->ICU4 <---------YAB1 <---------YAB1 <---------AHL20(2)    ---------->DOF2       --------->MYB46(3)   atgttgatgttgattatttgtataatgttaattgttttttattttttcgtgtaggtatttgcattagagcgatttactatctttcaacaactatttccat  8205500                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------ZAT18                     --------->ZAT18                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                    --------->ALFIN1                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <---------ANAC58                  <---------ANAC46                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                  <---------ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 --------->ATHB12                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)              xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->ATHB12             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------MYB46(3)           <---------ARR14(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)--------->ARR14(2)  =============MYC_MYB       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       <----------DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ------->GAMYB      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------------AGL15              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----------->RAV1(1)      --------------->AGL15              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ----------------->AG              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ----------------->AGL3            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <-----------------AGL2           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <-----------------AGL1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------PCF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <-----------------AGL3<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ZAT18            x xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ALFIN1         --------- xxxxxxxxxxxxxxxxxsmallRNA(si3) ----------->TBP  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ANAC46 xxxxxxxxxxxxxxsmallRNA(fl3) <---------ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ANAC58 xxxxxxxxxxxxxxsmallRNA(fl3) --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------ANAC58 xxxxxxxxxxxxxxxxsmallRNA(si3)--------->CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->CCA1(2) xxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------TGA1a--------->YAB1-------   ccagttttcctttaatggttgagtgggcaaagatatataaaccgtataccaaaaattgtgccaacagaagtgggggacactatcaagagatgcttgtaga  8205600                    >>>>>>>>>MYB98                   --------->MYB52(1)                   ------>MYB46(1)                  --------->MYB55(1)                 <---------MYB59                 <---------MYB46(2)                 <---------MYB52(2)                 <---------MYB111(1)                --------->ANAC55(2)                <---------ANAC55(2)           --------------->AtSPL3           <---------------AtSPL8                                            <---------AHL20(2)       --------->At4g35610                                                <---------AHL20(2)       <---------At4g35610                     ------->TEIL               --------->AHL20(1)  <---------TOE2(3)------>MYB83<---------CCA1(2)                          <---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->At4g35610            --------->AHL20(2) >REM1(2)  --------------->AtSPL8     <-----------HVH21      <---------AHL20(2)        xxxxxxxxxxxxxx -->ETT(2) <---------------AtSPL3  <----------DOF2          --------->AHL20(2) <---------AHL20(2)<---   catgaaggaagatgaggtacctaacaaaatttcatctctttgtcatatgcatttgttctatattaaatacttagattatattttttcagattaagtggca  8205700  Previous    Next  AGI:  At2g18917.1    Description:  other RNA Range:  from: 8204196    to: 8205185    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g18920.1    Description:  unknown protein Range:  from: 8204835    to: 8205242    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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