Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <---------ANAC46         ------>ZmHOX2a(2)                                                           <---------RAP2.3(1)         ==================HOX2a_HOX2a                                               ------>NtERF2        <------ZmHOX2a(2)                                                           <---------DEAR3(1)        ===================HOX2a_HOX2a                                              <---------RAP2.6(2)        --------->CCA1(2)                                                           <---------bZIP60(1)       --------->ARR11(3)                                                           <---------RAP2.3(3)       --------->ARR14(2)                  <---------AHL20(2)                       --------->bZIP60(1)       --------->AGP1                     <---------MYB52(1)                     ----------->TGA1       <---------ARR14(2)       ----------->GT1                                  ----------->HVH21       <---------AGP1         <---------At4g35610              <-----------GT1  <-----------HVH21       <---------ARR11(3)     --------->At4g35610         --------->GLK1(1)  <----------DOF2 --->TOE2(3)        <------ZmHOX2a(1)   ----------->GT1   <---------GLK1(1) --------->TOE2(3) ------- >WOX13(1)        <---------TOE2(3)  --------->GLK1(2)--------->YAB1      ------->TEIL<------NtERF2   caaattcaagatctaaaaatgaggaaactttgagctgaaaatcagttaattgtttatcagatttctcaccattttgaacctttgtgacggcgtttttaaa  8201000                                                                --------->MYB52(1)                                                               <---------ARR14(2)                                                               --------->ARR14(2)                                                        <------NtERF2                                                      <---------DEAR3(1)                                                      --------->ALFIN1                                                      <---------ANAC46                                                     --------->ATERF1(1)                                                     <---------At4g35610                                                     <------NtERF2                                                     ------>NtERF2                                                     <---------LBD16                                                    ------>NtERF2                                                    <---------RRTF1(1)                                                    <---------RAP2.3(1)      ----------->HVH21                                                   <---------DEAR3(1)      --------->bZIP60(1)                              --------->ANAC46     <---------RAP2.3(2)     <---------bZIP60(1)                              --------->ANAC58     <---------RRTF1(2)     <------NtERF2                         <---------At4g35610      <---------At4g35610    ------>NtERF2                         --------->At4g35610   ----------->RAV1(2)    <---------MYB46(3)                     <-----------HVH21         --------->ZAT2----------->ARR10                   ------>ZmHOX2a(1)           <---------At4g35610    --------->ABI4(2)               <---------RAP2.6(3)       <---------AHL20(2)<------ZmHOX2a(1)<-----------HVH21               <---------SPL7 --------->ANAC58<-----------RAV1(1)     <---------ATERF1(1)        ----              --------->RAP2.6(2)  <------NtERF2  <---------LBD16    <---------AtMYB61           <---              --------->DEAR3(1)  ------>NtERF2--------->At4g35610   --------->ALFIN1 --------->At4g35610             --------->DEAR3(2) --------->MYB46(3)--------->At4g35610<---------DEAR3(1)         ----- --->DOF2    --------->ATERF1(1)<---------ABI4(2)<-----------RAV1(1)<---------MYB52(1)<---------At4g35610   gaaccccaaaactgagccgtcctggtcagaagaagccaccgatttaaactgctgcggcggaggaagaaccggtggtgccatcacaggcttctgagacaca  8201100             <---------MYB52(1)            <---------At4g35610                                                        --------->ATHB12          <-----------RAV1(2)            <---------ICU4                            --------->ALFIN1         <-------TEIL                    ---------->DOF2                        <---------AtMYB61        --------->CCA1(2)             --------->YAB1                           <------ZmHOX2a(1)        --------->GLK1(2)      <------ZmHOX2a(1)                               ======================       <---------ARR14(2)   <-----------RAV1(2)                             <------ZmHOX2a(1) ----->At4g35610         --------->ATERF1(1)     <---------ZAT6    --------------->AGL15 ------At4g35610      <------ZmHOX2a(1) --------->ICU4      <---------GLK1(2)--------->ALFIN1  <----- ---->MYB52(1) <---------MYB46(3) <------ZmHOX2a(1)    <------ZmHOX2a(1)    =========================   gcggagggagattcaggtggtttaggagtcgcaggaggagtcataaagacagtgtaaggaccgatttttccgataacaggaggaggtgttgatgggtctt  8201200                                                                                                    -                                                                                                 <---                                                                                                 <---                                                                                             <-------                   ----------->GT1                                   ------------------------>ANAC81<                  ----------->GT1                            --------->GLK1(2)              <-------TEIL                  <---------ZAT6                             <---------ARR14(2)          <---------HSFB2a(1)    ------>ZmHOX2a(2)                                        --------->ARR14(2)          --------->HSFB2a(1) ==========HOX2a_HOX2a                                    --------->ANAC58         >>>>>>>>>TBF1 <--- -----DOF2    ---------->DOF2         ---------->DOF2     --------->ANAC58      >>>>>>>>>TBF1<------- ==========HOX2a_HOX2a<---------AHL20(2)    ---------->DOF2 <---------GLK1(2)>>>>>>>>>TBF1 --------->ARR11(3)   tgttgatcggcatcttgaaagtgttaaattgagagaaaatgaaagagaaagttttcagacaagaatctgagattaagaagaagaagaagaaaggttcttg  8201300      <---------REM1(1)  --------------->AGL15  <---------------AGL15 <---------ANAC58 <---------ANAC58 -------->STY1(2) ------ANAC58 ------ANAC46                       --------->ALFIN1            <---------TOE2(3) --ANAC58                        --------->DAG2               ----------------------->TaNAC69(2) ---------STY1(2)               ---------->DOF2    <---------LBD16 ------ANAC58              --------->At5g28300    <---------LBD16  <---------ARR14(2)        <------- --ANAC58                 ----------->GT1         <-----------RAV1(2)     <-------TEIL       <-------   cttgctagttgtagttgcaagttgcagacagtgaaaaagtggaagattagtttcaggggagagagtgaggttttggttcgtctctgtgttttttttcttg  8201400                                                                                                 ----                    *TSS                                                                        -----                 <----------DOF2                                                                <----              <-----------GT1                                                                   -----            <---------DAG2                                                                      <----      --------------->AtSPL8                                                                    <----      <---------------AtSPL3                                                        <----------DOF2      <---------------AtSPL8       ---------->DOF2                   <----------DOF2<---------DAG2 <---------ZAT6  <---------DAG2  <---------ATHB12           <---------ANAC58     ------>ZmHOX2a(1) --ANAC58   <----------DOF2  ------------>CBF               <---------ANAC58 <-----------GT1    ----- --ANAC58 ------->TEIL --------->ZAT6             --------->ANAC46  <------------------------ANAC81   caagtgtaaatgtactttacttttcacactgaccaatgaaagagtcaaacacacttcacatttcttgcattcttttttttttcctgctttttccgacgaa  8201500                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                                   --------->CCA1(2)                                                                      <---------ANAC46                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                     ------>ZmHOX2a(2)                                                              <---------AHL20(2)  <-----------ARR10                                   <---------ICU4            --------->AHL20(2)   --------->AGP1   <----------DOF2                 -------->HAHB4           <---------YAB1        <---------AGP1  <------------------------ANAC81  --------->YAB1         -------->ATHB1          --------->ARR11(3) ----->HSFB2a(1)                   <--------ATHB1         <--------HAHB4          <---------ARR11(3) -->TEIL<----------DOF2           --------->ICU4          --------->ATHB51       --------->RVE1(1) -----ARR11(1)               --------->TOE2(3)            --------->YAB1      ---------->DOF2 ---->GLK1(2)              <-----------GT1                <---------ICU4--------->ALFIN1 -------ARR10        ------>ZmHOX2a(1)                   <---------ATHB51--------->REM1(2)      ----- -----ARR14(2)       <----------DOF2                     --------->ICU4<---------LBD16    --------->TOE1(3) ---->ARR14(2)    ---------->ID1  <---------ATHB51       <---------YAB1--------->LBD16    --------->TOE2(3)   tctttcttttcttttttttggtccttttttttcttaataattcttcaaaaaaaaaaacaattattatatgatccgtggagaaaagatctaaaccctaaac  8201600       <---------YAB1    --------->ICU4  <---------ICU4  --------->YAB1  <---------AHL20(1)  <--------ATHB1                                                                --------->ZAT6  --------->AHL20(2)                                              --------->ATHB12  --------->ATHB51                                <---------TOE2(3)      <---------ZAT18 <---------ATHB51                               ---------->DOF2  <------ZmHOX2a(2)                 <- --------->ICU4 <---------ATHB12       <------ZmHOX2a(1)        --------->ARR11(3)              ----- <---------ATHB12--------->YAB1        =================================HOX2a_HOX2a           <------ ---->ANAC46  --------->WOX13(1)      <----------ID1            <---------ARR11(3)     ---------->DOF2   acaataattttgatttcaatcagacatgaaacattttgggaggacaaaaaaaaaggtttggatttagatcatttggccacttgcactacaaaagacgtta  8201700           --------->ANAC55(2)                     --------->At4g35610           <---------ANAC55(2)                   --------->MYB46(3)           ----------->GT1                      <---------At4g35610 ----------GT1                                 ----------->RAV1(1) ---------->AtSPL8                     --------->TOE2(3)               ------->TEIL                 - ---MYB52(1)            <---------ARR14(2)    <---------WRKY38(1)  ------->TEIL      --------->REM1(2)   tgtacaatccaattcgtaatattgcatatacaaaaaaaaaacattaagtcaacagatgaacaaaacatggacgtatcaaactcaccatgtacagacaata  8201800                                    <---------ALFIN1                          <----------DOF2                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                                                       <----                        <---------RVE1(1)                                            <---------MYB46(3)                       <---------AGP1                                               <---------ZAT6                       --------->ARR11(3)                                    <---------ANAC58   <----                       <---------ARR11(3)                        <---------ANAC55(2)--------->ALFIN1                       --------->AGP1             <----------DOF2--------->ANAC55(2)<---------AtMYB61 ------>TEIL     <<<<<<<<<EIN3    ----------->RAV1(1)  <-----------GT1       <---------ANAC58   <----   tgaacatgtttttgatcaatgtatagatcttttgtccaacacatctaaatgcctttttaacttcatcacttgatcaagtacttgcagtggtagaagttgc  8201900  Previous    Next  AGI:  At2g18910.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO43936.1) Range:  from: 8199790    to: 8201420    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g18915.1    Description:  LKP2 (LOV KELCH PROTEIN 2); ubiquitin-protein ligase. Identical to Adagio protein 2 (ADO2) [Arabidopsis Thaliana] (GB:Q8W420;GB:Q9C5S6); similar to ZTL (ZEITLUPE), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G57360.1); similar to FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G68050.1); similar to ZTL [Ipomoea nil] (GB:ABC25060.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN82181.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43219.1); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain Kelch repeat type 1 (Int Range:  from: 8201654    to: 8204356    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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