Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      ------>NtERF2                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)xxxxxxxxxxxxxxxx>smallRNA(i)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               --------->ANAC58                  xxxxxxxxxxxxxxxx>smallRNA(i)                               --------->ANAC58                 xxxxxxxxxxxxxxxx>smallRNA(i)                               --------->HSFB2a(1)              --------->ZAT2                               <---------HSFB2a(1)    <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxsmallRNA(le3)    <---------At4g35610                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------GLK1(2)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->At4g35610                            <------NtERF2            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <---------SPL7           <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         <---------LBD16--------->MYB52(1)      <---------ZAT2                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <---------ALFIN1                         <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ALFIN1                    <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxsmallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <--      <---------ANAC46---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     <-----    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)------>MYB46(1)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------YAB1    ------->TEIL    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i) <---------MYB46(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(i)        xxxxxxxxxxxxxxxxxxx    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>MYB83 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  -------->P  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxx   tgtatgtaacttgtaggctctctctaaggcggaacgctcccctaccgatgtattttgacatcccacagcttcggcccatgtagtctattggttatttttg  8164900                                                                                 --------->MYB52(1)                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)                                                <-----------GT1               --------->LBD16              --------->AHL20(2)       <----------DOF2                       <---------HSFB2a(2)       --------->AHL20(2)        ------>ZmHOX2a(1)                <---------AHL20(2) -------MYB46(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->AHL20(2)       <--------- ------RAV1(1)<---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->HSFB2a(2) xxxx>smallRNA(i2) <-------TEIL --------->TOE1(3)                --------->AHL20(2) ----------->GT1 xxxxxxxxxxx>smallRNA(se3)      --------->TOE2(3)   <---------GLK1(2)     --------->ARR14(2) xxxxxxxxxxx>smallRNA(i2)------->TEIL  <---------DAG2--------->GLK1(2)    <---------ARR14(2)     ----   tggttcagtttaaattttaaatacatgtatttatcctcaaacttttttttttgcgattctcaaactatttaattcaaatccagaaacggtttatttctcc  8165000                                                    -------->HAHB4                                                    <--------HAHB4                                                    <--------ATHB1                                                    --------->YAB1                                                    --------->ATHB12                                                    --------->ATHB51                                          <---------ANAC58                                          <---------ANAC58 <------ZmHOX2a(2)                                     <----------DOF2<---------ICU4                           --------->AHL20(2)      --------->ICU4                           <---------AHL20(2)      <---------ATHB51                          <---------AHL20(1)       <---------YAB1    <-------TEIL          --------->AHL20(2)  --------->ANAC55(2)                        ------->TEIL --GT1    ------->TEIL    <---------AHL20(2)  <---------ANAC55(2)                <---------TOE2(3) ----->LBD16  <-----------GT1 <---------AHL20(2) --------->YAB1               <---------ATHB12<------   ccaaaatacatgtatttatccatgttaatttttttatttctttggcttaagtaataattagatcaatacattttagaccaataaacgtttgaacgtcttt  8165100                                                                                 <---------ANAC55(2)                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC46                                                                                 <---------ANAC55(1)                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                             <-------GAMYB                                                                            <------MYB83                                --------->ANAC58                            <------MYB46(1)                                --------->ANAC58                            <---------MYB46(3)                          --------->ANAC58             --------->YAB1      <---------AtMYB61                          --------->ANAC46         --------->MYB46(3)   <---------MYB46(3)                    <-----------HVH21      --------->ARR14(2)          <---------WOX13(1)        ----------->GT1   --------->ANAC58 <---------ARR14(2)       ----------->HVH21            ---- ----DOF2       <---------AHL20(2) ------->TEIL------>ZmHOX2a(1)  --------->ANAC55(2)            ----   ttgcatcagaacgtgaaattaatgtcaaacgcaaacgcatgtacaaatcctgaacaaacataccgcttaggtgatggatggttgcgtaagaacaaaacac  8165200                                                           ----------->HVH21                                                          ------->MYC3                                                          <-------MYC3                                                         ===================================bZIP_DOF                                              --------->ARR11(3)                          <----------DOF2                                   <-------MYC2          --------->TGA1a               <-----------GT1                                   ------->MYC2          ===================================bZIP_DOF                                   ------->MYC3          <---------O2            <----------DOF2                                   <-------MYC3          <---------TGA1a        ------>ZmHOX2a(2)                                  --------->ANAC58       --------->O2           *TSS <-----------GT1                                  --------->ANAC58       <---------ANAC46      <---------RVE1(1)                                 <---------TOE1(2)       --------->ANAC46      <------ZmHOX2a(2)                         --------->DEAR3(1)   <---------ARR11(1)              <---------AGP1                         <---------ALFIN1     --------->ARR14(2)              --------->AGP1            <-----------TBP      <---------TOE2(2)       <---------ANAC55(2)  <---------ARR14(2)        <------NtERF2 <---------ALFIN1        <---------ARR11(3)              --------->ARR14(2)    -   --------->ANAC46  ----------------------->TaNAC69(2)  --------->ANAC55(2)  --------->ARR11(3)    < ----->TOE1(3)       <---------ABI4(2)        <---------ARR14(2)              <---------ARR11(3)    < ----->TOE2(3)     <------ZmHOX2a(1)         <---------CCA1(2)               <---------CCA1(2) <<<<<<   cttaaacggcagcgttttgtaggagcaccgcttcgcacgtttcttccatatctctgatcacgtgatagtcgtcttcttcagatcttttatcactttcttc  8165300                                 --------->LBD16                                --------->LBD16                               <---------LBD16  --------->LBD16              --------->LBD16 --------->LBD16          <---------DAG2 -------->HSFB2a(2)       <----------DOF2           ---------->DOF2                             ----- ---------HSFB2a(2)    <-----------GT1          --------->LBD16                   --------------->AtSPL3 ---------LBD16    ---------->DOF2              <---------LBD16                   <---------------AtSPL3 <<<TBF1      ---------->ID1  <---------LBD16 <---------LBD16       <-----------HVH21 --------->SPL7   ttcccggagaaaatttggccctaaatcactttcccgggaaaatcaaactctggggaaagagttgaaacaatgtcacaaggcgatacagtaccgcttcatc  8165400                                                                <---------ARR14(2)                                                                --------->ARR14(2)                                                              --------->LBD16                                                             --------->ANAC58                                                             --------->HSFB2a(2)                                                             --------->ANAC55(2)                                                             <---------ANAC55(2)                                       <---------TOE2(3)     --------->ANAC46                                      --------->MYB52(1)     <---------HSFB2a(2)                                    <---------WOX13(1)       --------->LBD16                        <                              <-----------ARR10              --------->ANAC58                       -                              --------->GLK1(2)             <---------LBD16            --------->DEAR3(1)                              --------->ARR14(2)        --------->At4g35610           --------->ANAC46                              <---------ARR14(2)       --------->MYB59              <---------ALFIN1-         --------->YAB1      <---------GLK1(2)        --------->YAB1               --------->MYB46(3)        <---------ATHB12  --------->HSFB2a(2)        <---------ATHB12        ------>NtERF2     ------      --------->WOX13(1)<------ZmHOX2a(2) ---------->DOF2<-----------HVH21  --------->DEAR3(1) ------ ---->MYB46(3)   >>>>>>>>>WRKY18 <---------YAB1    --------->WOX13(1)    --------->ANAC46      ------   catcgtctcaatcagacattgacgagatcgagaatctgattaacgaaagcgtccaatcaggtcccggaaccgttctcgccgctcgtccaccgagcccaac  8165500                                                              <---------ALFIN1                                                      <---------HSFB2a(1)                                                      <---------HSFC1(2)                                                      --------->HSFB2a(1)               <---------ARR11(3)                     --------->HSFC1(2)                            -               --------->ARR14(2)                    ------->TEIL                        --------->DAG2               --------->ARR11(3)                    --------->ARR14(2)                 ---------->DOF2  --------->TOE1(2)                                  <---------ARR14(2)           <---------ZAT2  --- ---------ARR11(3)          <<<<<<<<<TBF1            <-----------ARR10            <---------At4g35610 -------->ARR14(2)       <<<<<<<<<TBF1               <---------ARR11(1)           --------->At4g35610 -------->ARR11(3)    <<<<<<<<<TBF1                 <---------ARR14(1)         <---------At4g35610<-- -->P          <---------ARR14(2)        --------->ARR14(2)   --------->DEAR3(1)  --------->ZAT2 <--- >MYB46(1)     <-----------ARR10        <---------MYB52(1) <---------ALFIN1<-----------TGA1      ---- >MYB83       <---------CCA1(2)<<<<<<<<<TBF1        <---------CCA1(2)     <---------ETT(2)  ---------   cagaccttcgattccagtatcttcttcttcttcttcttctccgtttatgcaatcgaatcttccaccgcttcatccgtcgtcatcagctcagaaagtgaca  8165600                                                                          --------->LBD16                                                                          ------>NtERF2                                                                         --------->DEAR3(1)                              <---------ANAC55(2)                       <---------LBD16                           <------NtERF2                              ------>ZmHOX2a(2)                       ------>NtERF2                                 --------->GLK1(1)                       --------->LBD16                               <---------GLK1(1)              --------->LBD16 --------->ANAC55(2)                   <---------ARR14(2)           <---       --------->ARR14(2) <---------MYB46(3)                        --------->ARR14(2)           ----       <---------ARR14(2) <---------DEAR3(2)                        --------->ARR11(3)           <---       <---------MYB52(1)<---------DEAR3(1)                         <---------ARR11(3)      ------>NtERF2    <------NtERF2    <---------LBD16                                <-----------ARR10  <---------LBD16 ---------------------->TaNAC69(2)                                  <---------AGP1    <---------DOF5.7(2) ---->MYC3    ------>NtERF2--------->At5g28300                --------------------->WRI1   <---------ARR14(2) -----MYC3   --------->ANAC46 --------->ANAC58                <----------DOF2        --------->WRKY12 ------O2    --------->DEAR3(1)        --------->ANAC58      <---------ANAC58        ----------->HVH21 ----->O2    <---------ALFIN1 --------->ANAC58    --------->ANAC46 <---------CCA1(2) --------->WRKY38(1) -->HVH21  ------>ZmHOX2a(1)<--------P --------->ANAC58      <---------ANAC58       --------->DOF5.7(2)   catgtccccgttcctccgcctcttccggcggtaagtaactccagcaatttccaaggagcgagtgcttttggatctccgcctaatacgttgacggagcctg  8165700                                                                                  ===================                                                                                  ===================                                                                                 <---------LBD16                                                                                 --------->TOE1(2)                                                                                ------>ZmHOX2a(2)                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                              --------->ARR14(2)                                                                              --------->ARR14(3)                                                                              <---------ARR14(3)                                                                             --------->HSFB2a(1)                                                                             <---------HSFB2a(1)                                                                            ---------->TaMYB80                               ------>ZmHOX2a(2)                     --------->REM1(2)                               =====================================HOX2a_HOX2a--------->GLK1(2)                              <------ZmHOX2a(2)                      <---------ARR14(2)                    ------>ZmHOX2a(2)                              --------->LBD16------>ZmHOX2a(1)                   <------ZmHOX2a(2)                              <---------ANAC55(2)                  <---------ARR14(2)                              <---------ANAC46--------->LBD16                  <---------AGP1                             ------>ZmHOX2a(1)<---------ARR14(2)                  <---------ARR11(3)                         =========================HOX2a_HOX2a                  --------->AGP1                             ==========================HOX2a_HOX2a          ---------->DOF2    --------->ARR14(2)             <---------MYB59 ----------->ARR10   --------->ARR14(2)        <---------ARR14(2)            ----------------->AG<------ZmHOX2a(2)   <---------ARR14(2)    <---------LBD16                   ----------------->AGL1--------->TOE2(2) ------ANAC46     --------->ARR11(3)               <---------AtMYB61 --------->ARR14(2) <---------HSFB2a(1) ----->ALFIN1     --------->ARR14(2)           <---------ANAC58  ----------------->AGL1 <---------HSFC1(2) --------RAV1(1)----------->ARR10              <---------ANAC58 <-----------------AG    --------->HSFB2a(1)   tgtgggatactgtgaagcgagatctgtctcggatcgtgagtaatttgaagcttgtggtgtttcctaatccgtatagggaagatcctgggaaggctcttag  8165800  Previous    Next  AGI:  At2g18840.1    Description:  integral membrane Yip1 family protein. similar to integral membrane Yip1 family protein [Arabidopsis thaliana] (TAIR:AT4G30260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43242.1); contains InterPro domain Yip1 domain (InterPro:IPR006977) Range:  from: 8165280    to: 8167173    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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