Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------WOX13(1)                                            >>>>>>>>>ARR2                                     <---------YAB1                                   <---------ICU4    --------->AHL20(2)             -------->ATHB1    <---------AHL20(2)             --------->YAB1                                               -----   --------->AHL20(2)             --------->AHL20(2)                                           <----- ------>ZmHOX2a(1)                <---------AHL20(2)                                          ------- <----------DOF2                  <---------YAB1                                             -------- -------ATHB12                    --------->ICU4                                          --------->ANAC58 -->MYB46(1)          --------->TOE2(3)   <---------AHL20(2)                              --------->ANAC46 -->MYB83            --------->REM1(1)<---------AHL20(2)        --------->YAB1         <---------ETT(2) --->AtMYB61    --------->ANAC46  --------->AHL20(1)     --------->YAB1       <---------ATHB12------- ->HVH21    <-----------GT1     <---------ICU4    <-----------GT1     <---------AHL20(2)  --------->ANAC58   atccttttaatttgttactcgttacatcaattcaaaattattatttgattgttaaccatttataaatcatattatatccaattagtctgtctacgcaatc  8151600                                                --------->SPL7    ---------->DOF2 <---------AHL20(2)      <---------------AtSPL8                                  < ---->YAB1         --------->AHL20(2)       <---------------AtSPL3                        <---------AHL20(2) ----ATHB12      --------->TOE2(3)   --------->YAB1       --------->DAG2              --------->AHL20(2) -->ANAC58    --------->YAB1        <---------YAB1       ---------->DOF2      --------->ZAT18 ------- ->WOX13(1)  <---------ATHB12  <---------ARR11(3)  --------->ORA47(1)       --------->ANAC46 -------- -->ANAC58 --------->WOX13(1)  --------->ARR11(3)--------->DEAR3(2)   <-----------GT1 <---------AHL20(2)   aagaggtaaaggccaatcacattaattttaaaagatttatgatgaaatggtaccgtccaaaaagttgaaattttacaaactccactatatatataaaaag  8151700                                                           --------->ICU4      <---------AHL20(2)                               --------->AHL20(1)      --------->AHL20(2)                               <---------AHL20(2)   ----------->GT1                                     --------->AHL20(2)  ----------->GT1                                      <---------AHL20(1) --------->ARR11(3)                        <---------TOE2(3)              --------->ZAT18 <---------ARR11(3)            ----------->GT1     <---------AHL20(2)  ------->TEIL ---------At4g35610          <------ZmHOX2a(1)  ----------->GT1  <---------YAB1--------->ZAT14 -->DAG2              <---------TOE1(3)   --------->YAB1<---------AHL20(2)<---------ZAT18<---------ANAC46 -->DOF2    --------->MYB59<---------TOE2(3)--------->ZAT6<---------TOE2(3)    <---------ZAT14   tgagatgtttaaattaggctggctaagcttaggatgtaacacattaacaatagttaatttaatgtttatgatgtatcgcactatagttttgatgtgtatg  8151800                                           <----------DOF2                                          <---------DAG2       <---------TOE2(3)                   <-                   <-----------GT1<---------ZAT14             ---------->DOF2                  <-----            <---------ANAC58      --------->ZAT14            --------->AHL20(2)                <-----            <---------ANAC58    --------->ANAC46             <---------AHL20(2)                ------            <---------ANAC46<---------ALFIN1        ---------->DOF2       ---------->DOF2 <---------TOE2(3)  <-----------RAV1(2)      --------->MYB46(3)    --------->TOE2(3) ---------->DOF2       <-----------GT1   ctctccaggctgtttcgtttttcacattacccacactaaactcaccttttttcttaaagaaaattaaagtaaagctcaaagactgaaatattaacaatat  8151900           <---------TOE2(3)           <---------TOE1(3)      <--------HAHB4      --------->YAB1      --------->ATHB12      <---------ICU4                                   ------------>CBF     --------->ICU4                                    <---------ATHB12     <---------ATHB12                                 ------>MYB83                            *TSS     <---------YAB1                                   ------>MYB46(1)                        -------- ----------GT1                                       --------->WOX13(1)                      -------- ----AHL20(1)               --------->AHL20(2)     ------------>CBF              ------------>CBF ----ARR11(3)    --------->YAB1          --------->AHL20(2)                     --------->ANAC58 --->AHL20(1)<------ZmHOX2a(1)           ----------->TBP--------->YAB1          --------->ANAC58-----   ataactaatcattaaggaatcaaaactccattatatatgctctataaatactcaccaatcaatagccttctaaatgtctcaaacccaattcaaaccctta  8152000                                                                                                    -                                                                                                  ---                                                                                                 ----                                     --------->ZAT14                                            -----                                     <---------ZAT18                                            -----                                     <---------ZAT14                                            -----    --------->TOE2(3)            --------->HSFB2a(2)                                         --------  ------>MYB83                   <---------HSFB2a(2)                                         <-------  ------>MYB46(1)       --------->YAB1   <---------DAG2            <---------ANAC58   XXXXXXXXXXXXXXX <---------ALFIN1      <---------YAB1--------->ZAT18               <---------ANAC58  <---------ANAC46 ->TOE1(3)         <-----------------AGL3<----------DOF2        <----------DOF2      <---------ANAC58 ->TOE2(3) --------->TOE1(3)     <---------------AtSPL8  --------->ARR11(3)          <---------ANAC58 ----->DOF2--------->TOE2(3)     --------------->AtSPL8  <---------ARR11(3)   --------->YAB1 <-------   aacccacctaaaaccttcaaaacttataatggtttctagtacacttttggttatgtcaatatctctctttcttggtttaagcatattgcttgttgtacac  8152100    --------->ARR11(3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------ARR11(3)                <---------AtMYB61  --------->ICU4                      <---------YAB1 --------->DOF2                    --------->ALFIN1 ------>At5g28300                <---------ANAC58 ------->GT1    --------->ARR11(3) ----------->HVH21 ---->ANAC46    <---------ARR11(3) <---------AtMYB61 ---->ANAC58  --------->ANAC46   <---------ANAC46  --------->AHL20(1) ---->ANAC58  --------->ANAC58   <---------ANAC58  <---------AHL20(1) ->ZAT14      --------->ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --ZAT14    ------->GAMYB    --------->TOE2(2)<------ZmHOX2a(1) XXXXXX>MIR833-5P           ----------->RAV1(2)    --------->ARR11(3)                           <---- --REM1(2) --------->MYB46(3)<---------LBD16----------->GT1    --------->YAB1              --------->WOX13(1)   ggtaaagatttcaaccaagacattgacataacctggggtgatggtagaggaaatattttgaacaatggtactcttctaaatctcggtcttgatcaatctt  8152200                                                                              <---------LBD16                                                                             <---------At4g35610                                                                             --------->At4g35610                                                                    --------->LBD16                                       --------->DAG2              --------->LBD16                                      ---------->DOF2             <---------HSFB2a(2)                                  --------->ANAC58                --------->LBD16      ----------->HVH21                                  --------->ANAC58                <---------ANAC46<---------PCF5    -                                  --------->ANAC46                <---------LBD16----------->HVH21  <                             <---------------AtSPL8              <---------LBD16 <------NtERF2      -                             <---------------AtSPL3           <-----------HVH21 --------->LBD16     -   <-----------RAV1(2)     <---------ARR14(2)         <------ZmHOX2a(2)      --------->ZAT2         -  <-------TEIL             --------->ARR14(2)       --------->At4g35610      <---------ZAT2<---------ALFIN1 -----LBD16      ---------->DOF2 <---------LBD16    <---------At4g35610--------->GLK1(1)  --------->MYB46(3)   cgggttcagggtttcaatcgaaagccgagtatttgtacggaaaagttgatatgcagatcaaacttgtcccgggaaattcagccgggaccgtgaccacctt  8152300                                                 ----------->GT1                                               ------>MYB46(1)    --------->ANAC58                           ------>MYB83                             <---------ZAT14    --------->ANAC58                         <---------MYB59                           --------->ALFIN1   --------->SPL7                           --------->ANAC55(2)                      <---------ANAC46 -------->ANAC58                            <---------ANAC55(2)                      <---------ANAC58 ---------ANAC55(2)                 ------------>MYB.PH3(1)      <-------TEIL        <---------ANAC58 -------->ANAC58                 --------->AHL20(2)           --------->YAB1  <---------DAG2 -------->ANAC55(2)              <---------AHL20(2)  <---------AHL20(2)    <------ZmHOX2a(1) -------->ANAC46            <-------TEIL <---------MYB52(1) <---------WOX13(1)<----------DOF2   ctacgtaagcccttcttaattagctagacatacatataaatctgttacctaatgttatattgaatgatacattttgaggactttttggtgtgtagttgaa  8152400                                                          <-------TEIL                                                         <------ZmHOX2a(2)                --------->ANAC58                                                        --------->ARR14(2)                --------->ANAC58                                                        <---------ARR11(3)            --------->ANAC58                                                        --------->ARR11(3)            --------->ANAC58                                                        <---------ARR14(2)     <---------ICU4                                                        --------->AGP1        --------->ICU4               ----------->HVH21                       --------->GLK1(1)     <---------TOE2(3)            --------->TOE2(2)                    --------->MYB52(2)  <---------ZAT18--------->ZAT6            --------->TOE1(2)          <---------LBD16 <---------GLK1(1)--------->ZAT6--------->ANAC46   gtctcaaggattaacatgggacgagatagatttcgagtttttggggaatgttagtggagatccatacattgttcacactaatgtttacactcaaggcaag  8152500  Previous    Next  AGI:  At2g18790.1    Description:  PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ signal transducer. Identical to Phytochrome B (PHYB) [Arabidopsis Thaliana] (GB:P14713;GB:Q6S4P0); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYE (PHYTOCHROME DEFECTIVE E), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G18130.1); similar to phytochrome B [Arabidopsis lyrata] (GB:AAW56591.1); similar to phytochrome B [Cleome Range:  from: 8146963    to: 8151512    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g18800.1    Description:  xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative. Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 21 precursor (XTH21) [Arabidopsis Thaliana] (GB:Q9ZV40); similar to TCH4 (TOUCH 4), hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana] (TAIR:AT5G57560.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80250.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR00 Range:  from: 8151994    to: 8153347    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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