Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->ANAC58             <---------TOE1(1)                                          --------->PCF2             <---------TOE2(1)                                         <---------WRKY18(1)            --------->SPL7                                          >>>>>>>>>>WRKY18          <---------SPL7                                            <---------ANAC58          --------->TOE1(2)                                       <---------WRKY18(1)      <---------ARR14(2)                                         --------->WRKY12   --------->ARR11(3)      --------->ARR14(2)                                        <---------WOX13(1)  --------->AHL20(1) ----------->GT1                                               <---------ANAC58     <---------AHL20(1) -----YAB1--------->TOE2(2)                                    <-------GAMYB --------->ANAC46 -->YAB1 --------->ANAC46                                      <---------ANAC58   ----------->ARR10-- ---ICU4--------------->AtSPL3                           <---------ALFIN1    --------->ANAC58      -- ->ICU4 <-------TEIL                                 --------->ZAT18<---------ANAC58<---------ARR11(3) --ATHB51--------->ANAC55(2)                        <------ZmHOX2a(1) ----------->HVH21          <---   gagaagtatatacgtacgatgagagtataaaacatttcaatatttgtatagagaggacaccacttggttgacttgacccacgataagatattgaagaaac  8146600                                                                                           ------->MYC4                                                                                           <-------MYC4                                                                                           <-------PIF5                                                                                           ------->MYC3                                                                                           <-------MYC2                                                                                           <-------MYC3                                                                                           ------->MYC2                                                                                           ------->PIF5                                                                                          --------->O2                                                                                          <---------O2                                                                                          --------->TGA1a                                                                                          <---------ANAC46                                                                                          <---------TGA1a                                                                                          <---------ANAC55(2)                                                                                        ------->GAMYB                                                                                        =============                                                                                        <---------ALFIN1                                                                              <---------PCF2                                                                              --------->TCP20                                                                      --------->ANAC58  <------------OsbHLH66                                                                      --------->ANAC46 --------->MYB46(3)                                                                      --------->ANAC58-------->P                                                                     <-------MYC2     ===============                                                                     ------->MYC2     ==============MYC_MYB                                                                     <-------PIF5  <---------ZAT2                                                                     ------->MYC3  --------->ZAT2----                          <---------YAB1                             ------->PIF5 --------->ANAC46       <---------------AtSPL3   <---------TOE2(3)                    <-------MYC3 --------->ANAC58       <---------------AtSPL8<---------WOX13(1)                     --------->ANAC58<---------MYB111(2) ---->MYB46(1)          --------->YAB1                            <---------ALFIN1--------->ANAC58 ---->MYB83    <---------ARR14(2)                   <---------LBD16 --------->ANAC58--------->MYB46(3) ------MYB59   --------->ARR14(2)                   <-----------RAV1(2)       --------->PCF2---------   caaacttgtatagtacgaattcgaaatcgtaattgatgatgcgattcgacaagtccaggggctccctcccacgcgcaatgggcccagcaaccacgtgtgg  8146700                               ------>ZmHOX2a(2)                             <---------ARR11(3)                          <-------PIF5                          ------->PIF5                          ------->MYC3                          ------->MYC2                          <-------MYC3                         --------->O2                         <---------O2                         --------->bZIP60(2)                         --------->TGA1a                         --------->ANAC58                         --------->ANAC55(2)                         <---------ANAC55(2)                         --------->ANAC58                         <---------TGA1a                         --------->ANAC46                       <------------OsbHLH66                       <---------ALFIN1                      <---------ZAT18                 <---------MYB52(1) ==================================MYC_MYB  --------->WOX13(1)  <----------ID1<---------ARR11(3) ==================================MYC_MYB<---------ATHB12      --------->ANAC46      ----------->GT1 ----->ZAT18<-----------GT1  --------->ARR11(3)        <---------ALFIN1   ---------->DOF2     ------- >ALFIN1 <---------KAN4(2)<-------MYC2  --------->WOX13(1)--------->TOE2(3)   --------->ARR11(3)   ccactagagagaataaaccattagcccacgtgatcttgggcccaatcaatctctccctcacattaaacgacaaaacaaaagctcttctgggttaaattga  8146800                                                                          --------->DAG2                ----------->GT1              --------->DAG2              ---------->DOF2               <---------TOE2(3)            ---------->DOF2       <------ZmHOX2a(1)             ---------->DOF2         --------->ANAC58            ----------->GT1          --------->TOE1(3)          --------->ANAC58       --------->CCA1(2)          --------->TOE2(3)        ----------->RAV1(1)     --------->AHL20(1) ---->GT1 <----------DOF2          <---------ALFIN1       --------->AHL20(2)       <----------ID1   taaatatcaaaactttaaaggtaatttgctaaaatcgccacacaaaaaaagtcgcagaaaatatatgaggaaacaaaaagcgaagacgacaaaaaaaaaa  8146900                                                                        --------->ATHB12                                                                       <---------AHL20(2)                                                                       --------->AHL20(1)                                                                       <---------AHL20(1)                                                                   --------->AHL20(2)                                                                  --------->AHL20(1)                                                       ---------->ID1  --------->AHL20(2)                                                  <---------ANAC58<---------AHL20(2)              ===                                                  <---------ANAC58<---------AHL20(1)              ---                                         --------->ANAC58         --------->AHL20(2)<---------ALFIN1         <---------AHL20(2)              --------->ANAC58      *TSS<---------AHL20(2)            ====    <---------YAB1                       <---------ALFIN1    ------------>CBF    <-----------GT1 <---   aaaactctgatttttttttgttatctctctctatctgagaggcacacattttgcttcgtcttcttcaatttattttattggtttctccacttatctccga  8147000                                                             --------->ARR14(2)     <-----------GT1    ------>ZmHOX2a(1)                <---------HSFB2a(2)           --------->ICU4 ==============================HOX2a_HOX2a               --------->HSFB2a(2)           <---------YAB1 --->ZmHOX2a(2)        --------->TOE2(3)               -------->P                    --------->YAB1 ==============================HOX2a_HOX2a         --------->ZAT6                <---------MYB46(3) ---ZmHOX2a(2)    <<<<<<<<<TBF1              --------->GLK1(2)          <---------MYB52(1)  <--------   tctcaattctccccattttcttcttcctcaagttcaaaattcttgagaatttagctctaccagaattcgtctccgataactagtggatgatgattcaccc  8147100                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                     <-------GAMYB---                                                                                     --------->ATERF1(1)                                                                                     <------NtERF2---                                                                                    <---------RAP2.3(1)                                                                                   <---------DEAR3(1)                                                                                   <---------RAP2.6(2)                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                                   <---------ANAC58                                                                                   <---------DEAR4(1)                                                                                   <---------DREB2C(2)                                                                              --------->MYB52(2)<----                                                                             <--------P     ---------                                                                             <---------AtMYB61<------NtERF2                                                                             --------->ALFIN1 <------                                                                         <---------ANAC46   ---------                                                                         <------NtERF2      <--------                                                                        <---------LBD16 <------NtERF2                                                                       <---------ANAC46------>NtERF2<                                                                  --------->LBD16 <---------ABI4(1)--                                                                 --------->HSFB2a(2)<---------MYB46(3)                                                                 <---------HSFB2a(2)<---------ATERF1(1)                               --------->HSFC1(2)               <---------LBD16 --------->ALFIN1<----                               <---------HSFB2a(1)   --------->ANAC46  <---------DEAR3(1) <---------ANAC58       <---------ANAC58        <---------HSFC1(2)    --------->ANAC58 --------->ALFIN1----------->HVH21    ------>ZmHOX2a(1) --------->ICU4                 --------->ANAC58 --------->ATERF1(1) <---------ANAC58 ---GT1<---------ANAC58        --------->HSFB2a(1) --------->MYB52(1)<-----------HVH21--------->ALFIN1   taaatccttccttgtctcaaggtaattctgagaaatttctcaaattcaaaatcaaacggcatggtttccggagtcgggggtagtggcggtggccgtggcg  8147200       <---------ANAC58       <---------ANAC46       <---------ANAC58      <---------LBD16      <------NtERF2    <---------DEAR3(1)    --------->ALFIN1    ----------->HVH21  <---------ANAC58  <---------ANAC58 ----->ATERF1(1) ---NtERF2 ----GAMYB -----RAP2.3(1) ----ANAC58                       --------->ZAT6 ----DEAR3(1)                     <---------ALFIN1 ----DREB2C(2)                  <-----------GT1 ----DEAR4(1)                --------->ANAC58 ----ANAC46                  --------->O2 ----ANAC58          --------->DEAR3(1) ----RAP2.6(2)      <---------HSFC1(2) -------->HVH21     --------->MYB46(3) ------>ALFIN1      --------->HSFC1(2) -----MYB46(3)      --------->DEAR3(2)                                               <---------ARR11(3) >ALFIN1--------->LBD16  <-----------HVH21                                       --------->ANAC58 ---ABI4(1)         <-----------------------TaNAC69(2)                           --------->ANAC58 -->HVH21<------NtERF2  <---------ETT(2)              <------ZmHOX2a(1)      <------NtERF2 -DEAR3(1)          <---------HSFB2a(1)     <-----------GT1                 --------->HSFB2a(2) ------NtERF2     --------->ARR14(2)        --------->MYB52(1)              <---------HSFB2a(2) ---->NtERF2      <---------ARR14(2)    ------>ZmHOX2a(1)<------ZmHOX2a(1) <---------LBD16 -----ATERF1(1)>>>>>>>>>TBF1 --------->ANAC58  ------->GAMYB           <---------ATHB12            --   gtggccgtggcggagaagaagaaccgtcgtcaagtcacactcctaataaccgaagaggaggagaacaagctcaatcgtcgggaacgaaatctctcagacc  8147300                                                    --------->ANAC58                                                    --------->ANAC58                                                --------->ANAC58                                                --------->ANAC46                        --------->LBD16                                             --------->DEAR3(1)                     --------->ARR14(2)                                             <---------DEAR3(1)          --------->MYB46(3)                                             --------->WRKY12            <---------KAN4(1)                                             --------->ETT(2)            --------->HSFB2a(1)   ------      <---------ALFIN1                       <---------ETT(2)------>NtERF2 <---------ARR14(2) -------    ----------->RAV1(1) --------->ANAC58   <-----------HVH21--------->ANAC58        --------->GLK1(2) --------->ANAC46       --------->ANAC58  --------->DEAR3(1)--------->ANAC58   --------->LBD16<------ --------->ANAC58     ---------->DOF2 <---------ZAT14       --------->ANAC46 <---------LBD16--------- --------->ANAC58<---------ATHB12     --------->ZAT14     <---------ALFIN1 --------->GLK1(2)<-------- -------->DOF2 --------->WOX13(1) --------->ZAT6--------->ANAC58 <---------MYB52(1) <---------ARR14(2)   aagaagcaacactgaatcaatgagcaaagcaattcaacagtacaccgtcgacgcaagactccacgccgttttcgaacaatccggcgaatcagggaaatca  8147400                                       ==========================HOX2a_HOX2a                                   <---------ARR14(2)                               ------->TEIL                                                <-------GAMYB                               --------->SPL7                                             -----------                           <---------------AtSPL3              <---------At4g35610        <---------MYB46(3)                          ------>NtERF2------>ZmHOX2a(1)  <------ZmHOX2a(2)      --------->TOE1(2) --->ATHB12               <------------------SPL14  ----------->RAV1(1)       <---------ARR14(2) -->ICU4                 --------->DEAR3(1)  ----------->RAV1(2)  <---------CCA1(2)      --------->ALFIN1 ---ATHB12       --------->YAB1<-------TEIL  ===================RAV <---------CCA1(2)  <---------ZAT2 >GLK1(1)     --------->WOX13(1)   --------->ARR14(2)    <-----------HVH21--------->HSFB2a(2) -GLK1(1)   <---------ATHB12 <---------SPL7 ------->TEIL--------->At4g35610   --------->ARR14(2)   ttcgactactcacaatcactcaaaacgacgacgtacggttcctctgtacctgagcaacagatcacagcttatctctctcgaatccagcgaggtggttaca  8147500  Previous    Next  AGI:  At2g18790.1    Description:  PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ signal transducer. Identical to Phytochrome B (PHYB) [Arabidopsis Thaliana] (GB:P14713;GB:Q6S4P0); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYE (PHYTOCHROME DEFECTIVE E), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G18130.1); similar to phytochrome B [Arabidopsis lyrata] (GB:AAW56591.1); similar to phytochrome B [Cleome Range:  from: 8146963    to: 8151512    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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