Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                 <---------LBD16                                 ----                                   <---------MYB46(3)                                           -----                               <---------------AGL15        ------>ZmHOX2a(2)                  ------                           ------>MYB46(1)     --------->ARR14(2)          ----------->RAV1(1) <-----                           ------>MYB83        <---------ARR14(2)   <---------ANAC58           <----- -YAB1                   <---------MYB59       --------->GLK1(2)    <---------ANAC58      --------->ANAC46   cttcatcacatcgtagcccagagcatacctatcccatttgttgaaagagtttctgggtttgatccaaattgtttgcccaacacaagggttccaaacaaca  8144800                                                                            --------->DEAR3(1)                                                                         --------->DEAR3(1)     --------->CCA1(2)                                                   <---------ALFIN1    --------->ARR14(2)                                                  --------->MYB46(3)          -    <---------ARR11(3)                                               --------->ZAT18             <--- ----->GAMYB                --------->ANAC58                         --------->ZAT14          >>>>>>> ---->P                     --------->ANAC58                         <---------ZAT18          >>>>>>> -->GAMYB  <----------DOF2  --------->ANAC46                         <---------ZAT14         -------- --->MYB46(3)       <-------TEIL                        --------->CCA1(2)--------->AtMYB61   -------- ----MYB111(2)     <---------ANAC46       ----------->GT1    <---------ETT(2)      --------->At4g35610 ----MYB55(2)   <-----------RAV1(1)      --------->At5g28300 --------->ETT(2)      <---------At4g35610   accctagatatgtctttagtggtgcataacaagaaaccctcgcagtgaaaaatgttagatatgtcgacttgtgcaccaccgtctaagctaacaagttgac  8144900     <----------DOF2 --------->DOF2                                                 --------->YAB1 ------MYB59                                                    <---------ICU4 >>>WRKY6                                            ---------->DOF2 >>>WRKY11                                       --------->TOE1(3)                                <-- ->WRKY38(1)     <---------TOE2(3)               --------->TOE2(3)                 ------>ZmHOX2a(1) ->WRKY12        <---------TOE1(3)       ---------->DOF2     --------->YAB1  ------->TEIL <---------At4g35610   ctaaacgctctatgggattagggtttagtagattgagactgaataaagaaaccctaaaatcgagcatcatcacaacatgaaactccttactctgcttctt  8145000                                       <---------ARR11(1)                  --------------->AtSPL3                                       <---------ARR11(3)             ------->MYC3                                       --------->ARR11(3)             <-------MYC3                                      <---------CCA1(2)            <---------AtLEC2         <----------DOF2       ---------->DOF2               <----------DOF2--------->YAB1    <------  <---------ANAC58       <---------ANAC58                    <---------DAG2--------------->AtSPL8  <---------ANAC58       <---------ANAC46         --------->DAG2   <---------ANAC58          -------- --------DOF2            <---------ANAC58        ---------->DOF2   <---------ANAC58          <-------   ctttgcttcttctttatcgatgtgcttccttgtaaaagacatatctttggataaagtgttcaactttttgcatgtgaatcgtactcttctcagagatgtc  8145100                          <---------ALFIN1 ------>ZmHOX2a(2)                          ----------->RAV1(1)                        --------->LBD16   --------->CCA1(2)                        ------>NtERF2     --------->ARR14(1)                        <-----------HVH21 <------ZmHOX2a(2)                       --------->ANAC58  <---------ARR14(2)                     ------>ZmHOX2a(1)   --------->ARR11(1)                     ============================HOX2a_HOX2a                     =============================HOX2a_HOX2a                     <---------ATERF1(1) --------->ARR14(2)                    <---------ALFIN1     --------->ARR11(3)                 <---------ALFIN1================HOX2a_HOX2a         --------->HSFB2a(2)     ------>ZmHOX2a(1)         <---------HSFB2a(2)     =================HOX2a_HOX2a    <---------HSFB2a(1)--------->DEAR3(1)<---------ARR11(3)   <---------WOX13(1)                    *TSS    --------->HSFB2a(1)--------->ANAC58 <---------HSFC1(2)<---------MYB52(1)                    <----    <---------HSFC1(2) --------->ANAC46 <---------HSFB2a(1)  <---------ANAC58                  <-----    --------->HSFC1(2)<---------LBD16   --------->HSFB2a(1)  <---------ANAC58               <-------- -----HVH21      --------->DEAR3(1)    ----------->ARR10 <-------GAMYB <---------AtLEC2   <---------DAG2 ->bZIP60(1) <---------ZAT18--------->bZIP60(2)         <---------MYB46(3)                <----------DOF2 --bZIP60(1) --------->ZAT18<---------ALFIN1 --------->LBD16--------->ATHB12           <-----------GT1   actggaaacttcgagagcacctcctccgccacatcctttggaagatccgagagcatcgtcgttgattgtttttgcatatcgaagaaattttactttacct  8145200                                                                              <---------TOE2(3)                                                                          <----------DOF2                                                                   <---------ANAC58                                                                   <---------ANAC58                                                             <------------CBF---------->DOF2       --    <---------YAB1    <---------YAB1                      =========================================== ------DOF2        --------->ICU4 --------->ZAT6          <---------------AGL15                  <--- ----DAG2          --------->GLK1(2)  --------->ZAT14     --------------->AGL15          ---------->DOF2 ---GT1--------->GLK1(1)          <---------ALFIN1       <-----------------AGL2          --------->MYB52(1)   tttactctgatttcttcagagattatgagagaacgaacacttcagaaatgttagatgtttctaaattgggcttgggctttaaagtattacccaaaggcta  8145300                               --------->ATHB12                              <---------AHL20(2)                              --------->AHL20(2)             --------------->AGL15             <---------------AGL15            ----------------->AGL1            ----------------->AG            <-----------------AGL2            ----------------->AGL3            <-----------------AGL1                                                           --------           <-----------------AGL1<---------YAB1                                      <---------ICU4          <-----------GT1    <---------WOX13(1)                           <---------ALFIN1   <-------      <---------MYB52(1)<---------At4g35610                     <---------TOE2(3)    --------->YAB1 -------->DOF2          ----------->RAV1(2)                    ---------->DOF2      <---------ATHB12 =============================MADS_MADS                     <----------DOF2         --------->ICU4 ------YAB1<-----------GT1------>ZmHOX2a(1)    <XXXXXXXXXXXXXXXXXXXXMIR2939     <---------MYB59   <--   ttaaagtcgttttttccaatttgggctcctgatttattagtatgggagggcttagttttgggctttaaagtatgccccaatgcctaataatgtctagcta  8145400                                                            <---------AHL20(2)                                             --------------->AtSPL8                                            >>>>>>>>>ARR2  --------->AHL20(2)                                            >>>>>>>>>ARR1  <---------AHL20(2)     <---------YAB1 ->STY1(2)           ------->TEIL         <---------YAB1  <---------AHL20(2)   <---------YAB1       - --STY1(2)  ---------->DOF2    --------->GLK1(2) ------->TEIL        <----------DOF2         -------- -------ARR11(3)--------->MYB52(1)      <-----------GT1  --------->YAB1   ---------->ID1 --------->AtLEC2   gttcttcgttatactaaagaacgaattttggaaattcttgaattacgattgtacccttatattaatttcatcttttgtcttattcttatttatgcaaaag  8145500                                        -------->ATHB1                                       <---------YAB1                                      --------->GLK1(2)                            --------->ANAC58                            --------->ANAC58                     <------MYB83    ---------->DOF2  --------->At4g35610<---------ICU4           <------MYB46(1) -------->AtLEC2     <---------At4g35610--------->ATHB12        --------->MYB59<---------AHL20(2) -->DOF2     <---------TOE2(3)   ---------->DOF2            --------->ATHB12----------->GT1    <-----   ttatgcaaaagttttaagaaattagcagccaagcctaaagaatcattgagagtttataagggtgatttggtaattgagtagtttattagctaatttgatt  8145600          --------->At5g28300         ----------->GT1       ------->MYC3       <-------MYC3       ------->PIF4       <-------PIF4       <-------MYC2       ------->MYC4       ------->MYC2       <-------MYC4                                                     --------->ANAC46       <-------PIF5                                                  --------->ZAT14       ------->PIF5                                                  <---------ZAT14             ----      --------->ANAC55(2)                                            --------->ZAT18             <---      <---------TGA1a  <---------MYB46(3)                    ------->GAMYB--------->ZAT14       <----      --------->TGA1a  ----------->GT1           --------->GLK1(2)   <---------ZAT18         --------      <---------ANAC55(2)                       <---------GLK1(2)<---------------AtSPL8     <--------      --------->O2    <---------AtMYB61 <---------ANAC46    --------->MYB46(3)              ---------      <---------O2   <---------MYB52(1) <---------ANAC58    <---------MYB52(2)       <---------------AtSPL8     ------------>OsbHLH66              <---------ANAC58  --------->MYB52(1)   <---------ZAT18  ----- ----GLK1(1)       <-----------RAV1(1) ------->TEIL     --------->MYB46(3)<---------ZAT14<-------TEIL   tcagtggcacgtggtaaattactggtggtttaaaactattgtacgtggacgattcttagccaacgaactagtacactctagtgcgaacaggtacatgatt  8145700  Previous    Next  AGI:  At2g18780.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G16740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16446.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 8143840    to: 8145200    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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