Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <-----------GT1                                                                     ------         <----------DOF2                                                                     <-------  <---------AHL20(2)                                                                         --------  --------->AHL20(2)              <---------YAB1                                            --------- -------AHL20(2)            <---------AHL20(2)                          <---------MYB46(3)  --------- ------>AHL20(2)            --------->AHL20(2)                      <---------YAB1          <-------- ------AHL20(1)             --------->ATHB51                       <---------TOE2(3)     <---------WOX13(1) ----->AHL20(2)             --------->ATHB12                <------ZmHOX2a(1)--------->HSFB2a(2) ------AHL20(2)  <---------MYB52(1)          -------->P   --------->MYB59    <---------HSFB2a(2)-----   ttttttaatttctttacccgttttgatgaattatttgtgattctagcaaccatatgagattaggaaattgatgtttgttctataacatctaattgccata  8129900                                              --------->HSFC1(2)                                              <---------HSFC1(2)                                              --------->HSFB2a(1)                                         <------NtERF2                                        ------>NtERF2                                        --------->LBD16                                           <--                                       --------->LBD16                                    <---------HSFB2a(2)                                       <---------LBD16                                    --------->HSFB2a(2)      ----------->GT1            <---------ANAC58                                      --------->ALFIN1 --->ICU4                        <---------ANAC58                                     =============== --------AGL15            <---------ANAC58   <---------AtMYB61                        <-------GAMYB<- ------->AGL15            <---------ANAC58<---------DEAR3(1)                         <---------MYB46(3) -------->AG         --------->ATHB12 <---------LBD16                               <---------AtMYB61 -------->AGL1      <-------TEIL--------->ABI4(2)           <---------At4g35610  --------->ALFIN1---- ---------AGL2      <---------YAB1<----------DOF2         <-----------GT1      --------->LBD16  <---- ---->ATHB51---------->DOF2 <---------DEAR3(1)<---------MYB46(3)             <---------LBD16    -----   atcggtgatagaaaaaaagagtttcattgctcggtgctttcccggcgatggttctccgattcaccagacttgagtctcatccggtggaggttgtggaaga  8130000        ------>ZmHOX2a(1)  <-------MYC3  <-------MYC2                              <---------CCA1(2)  ------->MYC3                   --------->ANAC55(1)        <---------ANAC58  ------->MYC2                   --------->O2               <---------ANAC46 --------->ANAC55(2)             <---------TGA1a            <---------ANAC55(2) <---------ANAC58                --------->TGA1a            <---------ANAC58 <---------O2                    <---------O2               --------->ANAC55(2) --------->O2                    ==============================================MYC_MYB --------->TGA1a                 ============================bZIP_DOF <---------TGA1a            ----------->HVH21 <---------CCA1(2) ---------->DOF2 <---------ANAC58   --------->ATHB12     <---------At4g35610<---------bZIP60(1) <---------ANAC55(2)--------->ATHB51    <---------TOE1(3)   ----------->GT1   ------->TEIL -----TEIL <---------At4g35610   --------->bZIP60(2)        --------->bZIP60(1) ==========MYC_MYB <---------YAB1============================bZIP_DOF  <-------GAMYB ----------GT1   --------->YAB1  --------->ANAC58         <---------TGA2(2) <---------ZAT18 ----->CCA1(2)   <---------ICU4  <---------ANAC55(2)     ----------->TGA1<---------ANAC46 -----ARR14(2)  --------->ICU4   --------->ANAC58 <----------DOF2     <-----------RAV1(1)       <---- ---->ARR14(2)  <---------YAB1   --------->ANAC55(2)     ----------->HVH21--------------->AtSPL8<----   ttcacgtgtccttagcttattattattggtctgacacgtcttaagcttatctcttttttgtgacgtaaaagtctgttgtggacctcatatgtagactgtc  8130100                                                                                              -------                                                                                    --------->ANAC58                                            <---------ARR11(3)                     ------>MYB83                                            --------->ARR11(3)                     ------>MYB46(1)                                          <---------AHL20(2)                     --------->AtMYB61                 --------->ZAT6          --------->AHL20(2)                      --------->TOE1(2)         <-----------RAV1(1)           --------->YAB1                            --------->TOE2(2)        <---------TOE2(3)           <---------AHL20(2)                  ----------->GT1    --------->AHL20(2)    <----------DOF2              ----------->GT1                       ----------->GT1     <---------AHL20(2) -----ANAC58----------->GT1    --------->AHL20(1)                     --------->DAG2--------->ANAC58< -----ANAC58<---------REM1(1)  <---------ARR11(3)                    ---------->DOF2--------->ANAC46-   ttgagccttttatgttgtaacactgagcctcagtatattaaaaataaatctttctctgaaaaaaaaaaaaaaaaagttaaaaacctacgctaaaaaattc  8130200                            --------->YAB1               --------->ARR14(2)   <---------AHL20(2)        ---------->DOF2     <---------ICU4                   --------->GLK1(2) -->GLK1(2)    <---------ARR14(2)   --------->AHL20(2)   <-----------GT1                          <-- ---------ARR11(3)         <---------ATHB12      --------->At4g35610                        <-------- -------->ARR11(3)  <----------ID1--------->TOE2(3)----------->GT1            <------ZmHOX2a(1)<XXXXX   taggtcttggaaaagagtatttgggccaaatgatcacattaattagttatgggctgaaataacattctgaagttttatgaggaccgagagaactaagttt  8130300                                                                         <---------HSFB2a(1)                                                             ------>ZmHOX2a(1) ---------->DOF2              --------->DAG2                                 <---------At4g35610   *TSS ----------->GT1                 <---------DAG2  --------->GLK1(1)<---------HSFC1(2) -------TOE2(3)                         <----------DOF2 <---------GLK1(1)--------->HSFB2a(1) -TOE2(3)    ---------->DOF2  <----------ID1  <---------TOE2(3)          --------->HSFC1(2)   ------- XXXXXXXXXXXXXXXMIR396B --------->At4g35610   <---------TOE1(3)         <---------KAN4(2)     <------   aagaaaaatgttgaaaaaagcgtattagcagagggacaaacgctttttagggttttagatttcctctgagagagaattttcgaaagcttgagagagattt  8130400                                                        <---------TOE1(2)                                                        --------->SPL7                                                        <---------TOE2(2)                                                      --------->TOE2(2)                                                      <---------SPL7                                                     <---------ANAC58                                                   ------>MYB83                                                   ------>MYB46(1)                  --------->ANAC58             -------->P                  --------->ANAC58             ------>MYB46(1)                <---------ANAC58               ------>MYB83      --------->DOF5.7(2)                     ------>MYB46(1)      <---------MYB52(1)---------->DOF2       ------>MYB83     --------->TOE2(3)--------->ANAC58      --------->MYB46(3)                           <---------YAB1     --------->TOE1(3)--------->ANAC58      <---------MYB59     <<<<<<<<<TBF1           <----------DOF2 -->GLK1(1)     <---------ANAC58      <---------ICU4 <---------ANAC58               <---------CCA1(2) ---GLK1(1)     <---------ANAC46   <------ZmHOX2a(1)--------------->AtSPL3 <----------DOF2   ccaactacgttagccatggcgagcaccaaagttcaaaggattatgacccaacctatcgtacgtttcttcttcgattcctttgttccatctctttattgtt  8130500                                                   --------->HSFB2a(2)                                                 ------>NtERF2                                                <---------ARR14(2)                                                --------->ARR14(2)                                               --------->At4g35610                                               <------NtERF2                                               --------->ATERF1(1)                                               <---------At4g35610                                               --------->RAP2.3(1)                                              ------>NtERF2                                              --------->ABI4(2)                                              <---------ATERF1(1)                                              <---------ORA47(2)                                              <---------RAP2.6(1)                                              <---------MYB46(3)                                              <---------RAP2.3(1)                                              <---------ERF1                                              <---------RRTF1(1)                                              <---------DEAR4(2)                                              <---------DEAR3(2)                                             <---------RAP2.6(2)                                             <---------DEAR3(1)                                             --------->DEAR3(1)                                             <---------RAP2.3(2)                                             <---------RAP2.3(3)                                            --------->DREB2C(1)                                            --------->ATERF1(1)                                            <------NtERF2                                            --------->DEAR4(2)                                            <---------DREB2C(1)                                            <---------At4g35610                                            --------->RAP2.3(1)                                           <---------ORA47(2)                                           <---------RAP2.3(1)                                           <---------RAP2.6(1)                                           ------>NtERF2                                           <---------ATERF1(1)                                           <---------RRTF1(1)                                           <---------ERF1                                           <---------DEAR4(2)                                          --------->ATERF1(2)                                          <---------DEAR3(1)                                          <---------ATERF1(2)                                          <---------RAP2.3(2)                                          <---------RAP2.6(2)                                          <---------DREB2C(2)                                          <---------ANAC58                                          <---------ANAC58                                          <---------ANAC46                                          <---------RRTF1(2)                                          <---------RAP2.3(3)                                          <---------RRTF1(3)                                         --------->ATERF1(1)                                         <------NtERF2                                         <---------ABI4(1)                                        ------>NtERF2 --------->ARR14(2)                                        --------->ABI4(2)                                       ----------->HVH21                    <---------ANAC58   <---------DEAR3(1)                    <---------ANAC58  <---------MYB52(1)                  ------->TEIL        <-----------HVH21                  --------->ARR11(3) --------->LBD16--------->LBD16                 <---------CCA1(2) <---------LBD16 <---------HSFB2a(2)      ---------->DOF2          ------>MYB83  <---------ANAC58<---------ATERF1(1)              <---------------AGL15          ------>MYB46(1)<---------DAG2--------->ALFIN1           <---------TOE1(3)        <---------MYB59 <---------ANAC58<---------ERF1<---------ARR14(2) --------------->AGL15     <-        --------->TOE2(3)<----------DOF2<---------MYB46(3)        <---------TOE2(3)            <-----   tctatcgaaacctaattttgtatcttgctttttgttttccggtggcggcggctccagaacttgatttttaggtttcttcaaagtgtaagttgttcaattt  8130600                                                                                               <-----                                                                                               <-----                                                                                           ------>ZmHOX2a(2)                                                                                           <---------                                                                                           <---------                                                                                           <---------                                                                                           ----------                                                                                           ----------                                                                                           <---------                                                                                          <------ZmHOX2a(2)                                                                                         <---------ARR14(2)                                                                                         --------->ARR11(3)                            <---------YAB1                                               --------->ARR14(2)                      <---------TOE1(3)                                                 <------ZmHOX2a(1)                      --------->MYB59                                                <xxxxxxxxxxxxxxx <---------YAB1<---------TOE2(3)                      <---------ANAC46              --------->TOE1(2) --------At4g35610    <---------TOE2(3)      --------->ATHB12                   ---------->DOF2------ ----ARR11(3)  <---------TOE1(3)          <---------At4g35610<----------DOF2   <xxxxxxxxxxxxxxxxxxxxx   cttctgatttgctctctgaggttttaggttattagtagttcgtctactgatttgttccctggtcttttgtgtttgtgatgcagaaagctaggatccagat  8130700         --------->At4g35610         <---------At4g35610 ----ARR14(2) ----GLK1(2)                                                           <---------YAB1 --------AGL1                                                        --------->YAB1 --------AGL3                                                       --------->ICU4 --------AG                                                      <---------MYB52(1) ------->AGL2                                              <---------At4g35610              <-------- ------->AGL3           <------ZmHOX2a(1)                  --------->At4g35610             <---------ANAC58 --------AGL2         <---------TOE2(3)                    <---------ZAT2               ------>ZmHOX2a(1) xsmallRNA(i)     --------->CCA1(2)                    <---------REM1(1)    --------->ICU4 <---------ANAC58 --->ARR14(2)    <---------ARR11(3)                <---------TOE2(3)<---------YAB1 <---------GLK1(2) xxsmallRNA(l2)  --------->ARR11(1)        --------->At5g28300  <-------GAMYB--------->ATHB12   ttggctatttgagcagaaagatttgaggattgaaggaagaatcactgtaagttgatgttgaagctccgttatcatgaattgattagattcctggctttgt  8130800  Previous    Next  AGI:  At2g18735.1    Description:  other RNA Range:  from: 8129201    to: 8130158    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g18740.1    Description:  small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative. similar to small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative [Arabidopsis thaliana] (TAIR:AT4G30330.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ77967.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ58536.1); similar to Os02g0126700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045754.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, co Range:  from: 8130303    to: 8132086    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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