Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ------->GAMYB                                        <---------MYB52(2)                                        --------->MYB46(3)                                     --------->YAB1--------->At4g35610                         --------->TOE2(3)        ----------->RAV1(1)                 --------->At4g35610--------->MYB46(3)                 --------->ZAT2    --------->ANAC46<---------At4g35610                 <---------ZAT2   --------->WOX13(1)       ----------->HVH21                      <-- ---ZmHOX2a(2)   <---------At4g35610<---------ATHB12       <----------ID1                <---------ZAT6   tcaaaaaccgaagcctcagagctgaaacatcaactccaatcaacaaacaatgcagcagtaagtgacaaaacatcagcatttctacgaactagtgatgaaa  8121200                                                                                 <---------YAB1                                                                            <---------ICU4                                                                           <---------YAB1            --------->ANAC46                                              <---------ARR11(3)       <-----------ARR10                                                  --------->ARR11(3)       --------->ARR14(2)                                     <---------ARR11(3)<---------ARR11(3)      <---------CCA1(2)                                       --------->ARR11(3)--------->ARR11(3) ------->GAMYB                                   <----------DOF2    --------->YAB1 ---------GT1                        ---------->DOF2    --------->RAP2.6(2)<------ZmHOX2a(2)   taaccctcaaatctccacaattcaagagaaattcacatgaaaagtttcgaactttaagtcgcaatatctataacaagatcattatcttcgatttcaaatg  8121300                      <---------------AtSPL8                      --------------->AtSPL8                      <---------------AtSPL3                      --------------->AtSPL3               ---------->DOF2         --------->GLK1(1)                                           <----------DOF2         <---------GLK1(1)         <---------ZAT6                   <---------ANAC58       <---------    --------->At4g35610         --------->HSFB2a(2)                 <---------ANAC58  ------>ZmHOX2a(1)    ----------->RAV1(2)         <---------HSFB2a(2)          --------->ATHB12       ----------->RAV1(2)    <---------At4g35610   ------->TEIL                 --------->GLK1(2)           ------>ZmHOX2a(1)   gaacccatctgaaatctgaaagaagaagtaccttctagagttgataacaagaccgagattccatgatttggctttacaagtgttcctcctggtctttgtc  8121400                                           <---------HSFB2a(2)                      ---------->DOF2      --------->HSFB2a(2)               --------->ANAC58                 <----------DOF2    --------->ANAC58              --------->O2           --------->HSFC1(2)       --------->ANAC58        <---------WOX13(1)           <---------HSFB2a(1) <---------ARR11(3)         --------->ATHB12   --------->ANAC58           <---------HSFC1(2)----------->ARR10           <---------YAB1    --------->CCA1(2)           --------->HSFB2a(1) --------->ARR11(3)  --------->ATHB12 ----------->HVH21         >>>>>>> -DOF2     --------->At4g35610 <-----------ARR10  <---------YAB1  <---------O2             >>>>>>>>>TBF1   gaaacagagaagaagcttcctttgtaaagagaagagcttcgcaatctcgaagatgatttgtgattgagacgagacagagacgcgaagtttgaagaagaag  8121500                            --------->YAB1                        <---------MYB52(1)                    <---------At5g28300                                                <----------DOF2           --------->HSFC1(2)                                                          <---------DAG2           <---------HSFB2a(1)   ------>ZmHOX2a(1)                                  <-----------GT1           <---------HSFC1(2)   --------->TOE2(3)      --------->ANAC46         <----------DOF2           --------->HSFB2a(1)<---------YAB1         --------->ANAC46           <--------------------        <------ZmHOX2a(1)  <---------YAB1       ------>ZmHOX2a(1)  *TSS   <----------DOF2 >>TBF1----------->GT1 <-------GAMYB   ------>ZmHOX2a(1)      ------->GAMYB  ---------->ID1   aagagtaagaggaaacttcgcttaccgttatcatccttatccttcttctccttctccacaacaacgacgatttcttcttttccttttcactttttttttt  8121600                --------->MYB52(1)             <---------At4g35610        --------->ARR14(2)        <---------ARR14(2)    --------->ANAC58    <---------ANAC55(2)                                              ---------->ID1  <------ZmHOX2a(1)    --------->ANAC55(2)                                          <----------DOF2 <---------MYB52(1)    --------->ANAC46                                       <---------YAB1       <-------GAMYB    --------->ANAC58                 ------------>CBF   --------->ICU4          <----------DOF2   <---------LBD16     <-----------RAV1(2)              <---------YAB1         <---------ANAC58 ----ANAC81  <---------ZAT2  <----------DOF2   <----------DOF2  <---------ICU4 <---------ANAC58   tttcttacggaatccagctaatgggccaggccttttaggcccaatacatcttttgcacattattaatctttgttgttttgggcgttaggaatgagaccat  8121700                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                                              <---------CCA1(2)                    <-                                                            --------->AHL20(2)                     --                                                     --------->YAB1                             -----                                                  --------->YAB1  <----------DOF2          <---------YAB1            <----------DOF2                       --------->WOX13(1)                     <------ZmHOX2a(1)        <----------DOF2                          --------->MYB46(3)                      --------->YAB1   gacttcaagtctttctttctgtttcttcaagacttcaagtttcaagtttcaacaatcacaaattatatctttctctcaaatgaactatgtaggataatta  8121800         --------->At5g28300        ----------->GT1                      <---------ATHB12                                --------      --------->At4g35610              --------->YAB1                                     --------->DAG2      <---------At4g35610              <-----------GT1                                   ---------->DOF2 --------AHL20(2)                   --------->YAB1                                  --------->ANAC46 ------->AHL20(2)                 --------->AHL20(2)                             <---------ZAT14 ---- ------>GT1     <-------TEIL    <----------DOF2                                  --------->ZAT14 ----   gttaattaagctgtaacatccatagactataaaacttttaataacaaatcaagatgatgcaattgatcaaactctagttagacttcacacaaaaagcata  8121900                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                -----                                                      <---------AHL20(2)<------MYB46(1)        <-----                                 <---------GLK1(2)  --------->CCA1(2)   <---------ANAC46      ------- ->YAB1                      <-----------------AG  --------->ARR11(3)   <------MYB83          ------- ----->ANAC58              ----------->HVH21       <---------ARR11(3)  --------->MYB46(2)     <------ ----->ANAC58         <----------DOF2 <------ZmHOX2a(1)                --------->MYB59       --------   agcacatagaagtttagttatctcctttggtgacagattaggaatactctgaagatataatgagactacaagtttggtatatgtgaatgcatcaaatata  8122000     ---------->DOF2 --------->AtLEC2                                                                              ------ ------->YAB1                                                       ------->GAMYB         ------>NtERF2 --------ICU4                                                       --------->ANAC46     --------->DEAR3(1) -------ATHB12                                                      --------->ANAC58  --------->ANAC46 ---->YAB1                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----AHL20(2)                                     ----------->HVH21 --------->ANAC58<---------ALFIN1 -->AHL20(2)          ----------->GT1      --------->TOE2(3)   <------ZmHOX2a(2)    --------->ANAC46 -->AHL20(1)         ----------->GT1<---------ARR14(2)    ------>NtERF2            <---------REM1(2) ---AHL20(1)   <------ZmHOX2a(1)  <---------MYB46(3)     ------>NtERF2         --------->ARR14(2) ->YAB1     <------ZmHOX2a(1)     --------->MYB55(2)    ----------->HVH21      <---------ARR14(2)   atcatgccaaagaaggaggagaagggataaaaatggtggttccagcctcaatctgaccgcgaccgatcaaacgccaatgcctatccacacggcgacttat  8122100  Previous    Next  AGI:  At2g18710.1    Description:  SCY1 (SECY HOMOLOG 1); P-P-bond-hydrolysis-driven protein transmembrane transporter. Identical to Preprotein translocase subunit secY, chloroplast precursor (SECY) [Arabidopsis Thaliana] (GB:Q38885;GB:Q9SLG1); similar to EMB2289/SCY2 (EMBRYO DEFECTIVE 2289), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT2G31530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66509.1); similar to Preprotein translocase subunit secY, chloroplast precursor (CpSecY) (GB:P93690); similar to Preprotein translocase subunit secY, chloroplast precursor (CpSecY) (GB:Q9XQU4); contains InterPro domain SecY pro Range:  from: 8119166    to: 8121567    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g18720.1    Description:  translation factor, nucleic acid binding. similar to eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative [Arabidopsis thaliana] (TAIR:AT4G18330.2); similar to EIF2 GAMMA (eukaryotic translation initiation factor 2 gamma subunit), translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G04170.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ58686.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46572.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80178.1); contains InterPro domain Translation elongation factor EF1A/ini Range:  from: 8122002    to: 8123893    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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