Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------AHL20(2)                                                                 <--               --------->AHL20(2)                                                                 ---            <---------AHL20(2)                                                               --------           --------->AHL20(2)                                                                --------          <---------YAB1             <---------AHL20(2)    <---------AHL20(2)                <-------    <---------MYB46(3)               --------->AHL20(2)    --------->AHL20(2)----------->GT1<--------    ----------->GT1       --------->AHL20(2)    --------->AHL20(2)    --------->AHL20(2)    ---------   cctcagtggtttattatataaatatcaatttaagagaatataaatatcaatttaagagaatataaatatcaatttaagagagtaacttactcaaatcatt  8085000                                                          <---------ANAC46                                                         <---------LBD16                                                     --------->GLK1(2)                                                     --------->ARR11(3)     --------->ANAC46                                <-----------ARR10 -------ANAC55(2)                                    <---------ARR11(3) ------>ANAC55(2)                                   --------->CCA1(1)                 --------->ATHB12 ->ATHB12                                           --------->RVE1(1)             ----------->GT1  <- ->YAB1                                           --------->AHL20(2)         --------->AHL20(2)    -- --ICU4                                     --------->ANAC46                 <---------AHL20(2)    -- -ATHB12      --------->YAB1                --------->ANAC58                --------->YAB1     ------ >ICU4       <---------YAB1<----------DOF2  --------->ANAC58              <XXXXXXXXXXXXXXXXXXXXMIR844*   aagtaatccacaactattatacactcgtactttgagtttggattacaagaaaaaaaatcttcgggtatgagaaaactattaaaatggtttattgaaaaat  8085100                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                                   <x                                                                                            xxxxxxxxx                                                                                           --------->At4g35610                                                                                          <---------ARR11(3)                                                                                          --------->ARR11(3)                                                                --------->TOE2(3)         <xxxxxxxxxx                                                              <---------YAB1             xxxxxxxxxxxx                                                           --------->ARR11(3)            xxxxxxxxxxxx                                                           <---------AHL20(1)           xxxxxxxxxxxxx                                                           --------->AHL20(1)          xxxxxxxxxxxxxx                         --------->YAB1                    <---------ARR11(3)         xxxxxxxxxxxxxxx                         -------->HAHB4                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <x             <---------AHL20(2)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxx             --------->AHL20(2)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxx             <---------AHL20(1)                   --------->AHL20(2)                  xxxxxxxxxxxxxxx            <---------AHL20(2)                 --------->AHL20(2)                     xxxxxxxxxxxxxxx            --------->AHL20(2)                 --------->AHL20(1)                     xxxxxxxxxxxxxxx        <---------AHL20(2)                     <---------AHL20(2)                     xxxxxxxxxxxxxxx        --------->AHL20(2)       --------->AHL20(2)    <---------AHL20(2)       ===================== --------ANAC55(2)      --------->ICU4 <---------ANAC55(2)--------->AHL20(2)    ---------->DOF2<xxxxx ------->ANAC55(2)    --------->YAB1   ----------->GT1 <---------ICU4         <---------AHL20(2)  <xx --------->GT1     ----------->GT1<---------AHL20(2)  --------->AHL20(2)      --------->AHL20(2) ---- --->ARR11(3)--------->AHL20(1)  <---------AHL20(2) --------->YAB1        --------->AHL20(2)xxxxxxxxx   catgtaatattaaaataaatttagtaataatacaattaaatatgtaaaataaaataataaatatatcattaacctataaattaaaagttgaagagcttac  8085200                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                               <---------ATHB12                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <-----------HVH21                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <---------TGA1a       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                --------->O2          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <---------O2          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(s)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    xxxxxxxxxxxxxxxx>smallRNA(s)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------AHL20(2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------bZIP60(2)      --------->AHL20(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ICU4                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->AHL20(2)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------AHL20(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ATHB51  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ICU4========================bZIP_DOF--------->YAB1 -------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------AHL20(2)------->MYC3     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ------->AHL20(2)<-------MYC3     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxsmallRNA(fl3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(i2)   ----------->GT1xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ICU4   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(le3) --------->DAG2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------- xxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                ------>ZmHOX2a(1) xxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                --------->TOE2(3) xxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                         <---------YAB1 =========================bZIP_DOFxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->AHL20(1) xxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) <----------DOF2--------->YAB1  - ----->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)xxxxxxxxxxxxxxxx>smallRNA(s)   --------->YAB1     - xxxxxxxxxxxxxx>smallRNA(le3)---------->DOF2 --------->WOX13(1)  <---------ZAT18<---------AHL20(2) <-   attaattatttaatagacacatggcaaatggtaaagtgatgatgtgtcaatcatatggagagagttggccactttcatatatattatcatcgtccttaaa  8085300         <<<<<<<<<MYB98        <-----------HVH21       --------->ANAC46    --------->ARR14(2)    ------>MYB83    <---------ARR14(2)    ------>MYB46(1)         <---------DOF5.7(2)  --------->AtMYB61   ---------->DOF2      ----------->GT1 --->DOF2<---------MYB52(1) --------->MYB52(1)        <-------TEIL ----->MYB46(1)     <-------TEIL ----------->GT1     --------->CCA1(2)*TSS ----->MYB83      --------->ARR14(2)       <----------ID1        ----------->GT1              <------ --------ALFIN1   <---------ARR14(2)     ---------->DOF2---------->DOF2          <---------ZAT14   cccacctatccgttactccagattcaaagtaaacggcgaaaaaaaaagaaaaaagattcaaagtaaacagaaaaaaacttgagtttagagaaatcaccat  8085400                                              --------->LBD16                                            <---------LBD16                                          --------->ARR14(2)      --------->YAB1                                         <---------ZAT2   --------->LBD16    --------->ANAC46                     <---------At4g35610  <-------TEIL    --------->ANAC58                     --------->At4g35610<---------ARR14(2)    --------->ANAC58                     --------->ZAT2  --------->LBD16 <---------ZAT18                    --------->ARR11(3)   --------->ANAC46    <---------DAG2      ---- --------->ZAT14                   --------->RVE1(1)    <---------LBD16    ------>MYB46(1)       <--- <---------ZAT14           ----------->GT1<---------ARR14(2)--------->ARR14(2)                  ----- --------->ZAT18    <-----------GT1--------->CCA1(1)  <---------ARR14(2)   -------->P           <---- ---ICU4   --------->WOX13(1)  --------->AHL20(2)     --------->ARR14(2)   ------>MYB83  <-----------HVH21   gactacactcaatctatcaatttttccatcagttaaaatatccagctccgcatccatacccggattcatcaaaatccaacctttccttctccgtcggaag  8085500                                                                       --------->ATHB12                                                              <-----------HVH21                                                             --------->TGA1a                                                             <---------O2                                                             --------->bZIP60(1)                                                             --------->O2                     ------>NtERF2                           --------->bZIP60(2)                    -                     ----------->RAV1(1)                     <---------bZIP60(1)                -----                    --------->DREB2C(2)                      <---------ANAC55(2)            <--------                    --------->ANAC46                         --------->ANAC46             ------>NtERF2                    --------->DEAR3(1)                       --------->ANAC55(2)          <---------RAP2.6(3)                   --------->MYB46(3)                        --------->ANAC55(1)          <----------                  <---------ATERF1(1)                        --------->ANAC58            --------->RAP2.6(2)                  <---------At5g28300                        --------->ANAC58            <---------bZIP60(1)        <----------DOF2                                      <---------TGA1a             <---------ANAC46       <---------MYB52(1)                                    ============================bZIP_DOF  <- ----->ARR11(3)  <---------WRKY38(1)                         ============================bZIP_DOF --- ------ARR11(3)  <---------WRKY12                           <-----------STF1   --------->DAG2  <----- ---->At4g35610 ----------->HVH21           --------->MYB46(3)<-----------TGA1---------->DOF2-------- -----At4g35610<-----------HVH21          --------->ANAC46 <-----------GT1------>ZmHOX2a(2)<------NtERF2   ctctctaccgttttatcggtcaccgccagagacgaaggtatcatccacaaccatttcgatttcacgtcatacatgatcggaaaagctaatgccgtcaatg  8085600                                        <-------TEIL                                       <------ZmHOX2a(2)              ------>NtERF2           <---------ARR11(3)             --------->RAP2.3(2)      --------->ARR14(2)             --------->DEAR3(1)       <---------ARR14(2)             --------->RAP2.3(3)      --------->ARR11(3)            --------->RAP2.3(1)       --------->AGP1            --------->ORA47(2)    --------->YAB1 -------->ARR11(3)      <---------HSFB2a(2)            <---------MYB52(1) ----->DOF2------>NtERF2--------->HSFB2a(2)          --------->ANAC55(2) -WRKY12  --------->ANAC46       <---------ATHB12    <---------ANAC55(2) -HVH21 <---------ATERF1(1)     ------>MYB83---------->DOF2        --------->ANAC46 --------At4g35610      --------->LBD16--------->CCA1(2)           --------->ANAC58 ---->TEIL--------->DEAR3(1)    ------>MYB46(1)      --------->ANAC58                         <------ ----ATHB12<---------ATERF1(1) --------->WOX13(1)    --------->ANAC58                         ------- ->WOX13(1)--------->LBD16   --------->MYB46(3)     <-------TEIL   --------->ANAC58         ---------   aagctctcgactccgccgtctcgctccgagaaccaatcaagatccatgaagcgatacgttactcgcttctcgccagaggcaaacgagtgagacccgtgct  8085700                                                        --------->SPL7                                                        --------->ZAT18                                                        <---------ABI4(2)                                                       --------->ALFIN1                                                       --------->ATERF1(1)                                                       <---------ATERF1(1)                                                      <---------SPL7                                                     <---------ANAC58                                                   <---------RRTF1(1)                                                   ------>NtERF2                                                   <---------RAP2.3(1)                                                   <---------ORA47(2)                                                   <---------ERF1                                     --------->LBD16 <---------ANAC46                                    <---------ANAC58--------->ATERF1(1)                                 --------->GLK1(2) <---------DEAR4(2)                                 <---------ARR14(2)<---------ATERF1(1)                                 --------->ARR14(2)<---------RAP2.6(1)                               --------->HSFC1(2) <---------DEAR3(1)                               --------->HSFB2a(1)<---------RAP2.3(2)                           <---------ANAC46       --------->DEAR3(1)                          --------->ATERF1(1)     --------->ATERF1(2)                          <------NtERF2  --------->bZIP60(1)                         <---------RAP2.3(1)      <---------RAP2.3(3)                         <---------ATERF1(1)     <---------ABI4(1)                         ------>NtERF2   <---------bZIP60(1)                         <---------DEAR4(2)      --------->ATERF1(1)                         <---------ERF1  <---------ANAC58   --------->DEAR3(1)                         <---------ORA47(2)    --------->ATERF1(2)                        <---------DEAR3(1)     <---------ATERF1(2)                        <---------ATERF1(2)   <---------LBD16--------->LBD16                        -                        --------->ATERF1(2)   --------->DEAR3(2)                                  <--                       --------->ATERF1(1)<----------DOF2   <---------ANAC46                      ---                       <---------ABI4(1) <---------ANAC58   <---------O2                          ---                      <---------ATERF1(1)<---------ANAC46  <------NtERF2              --------->WRKY12        <---------ANAC58<---------RAP2.3(3)  --------->MYB52(1)                     <-------GAMYB <--        <---------ANAC58<---------RAP2.3(2) <---------ARR14(2)                     <---------ANAC46<-        <---------ANAC46<---------RAP2.6(2)--------->DOF5.7(2)             --------->ANAC46       <-- ---ZAT14         --------->MYB52(2)<---------ANAC58<------NtERF2          --------->ANAC58       --- -->ZAT14 --------->ALFIN1--------->RAP2.3(1)<---------DOF5.7(2)           --------->ANAC58  -------- >LBD16<------NtERF2 <---------DEAR3(1) <------NtERF2<---------ANAC58   ------>ZmHOX2a(2) ------>ZmHOX2a(2)   ctgtatcgcagcgtgtgagttagtgggcggcgaagaatccgtggcgttaccggcggcgtgcgccgtggaaatgatccacacaatgtcgttgatccacgac  8085800                                <------NtERF2                               <---------LBD16                               --------->At4g35610                               --------->LBD16                               ------>NtERF2                               <------NtERF2                               <---------At4g35610                              <---------ANAC46                              --------->DEAR3(1)                             --------->ATERF1(1)                            <---------ATERF1(1)                            ------>NtERF2                            --------->LBD16    --------->MYB46(3)                           --------->DEAR3(1) ------->TEIL                           --------->ANAC46 ------->GAMYB                        ------>ZmHOX2a(2)   ==================================MYC_MYB                       <---------GLK1(1)   --------->MYB46(3)               --------->MYB52(1)--------->LBD16   ===========================bZIP_DOF    --------------->AGL15 <---------LBD16  <---------MYB55(2) ----->ZmHOX2a(2)      <------ZmHOX2a(2)   <---------MYB52(2) -------ARR14(2)       --------->GLK1(1)  ------>MYB83                   <------NtERF2 ------>ARR14(2)      <-----------ARR10--------->MYB46(3)            <-----------HVH21 ------>ARR14(3)      <---------ARR11(3)  ------>MYB46(1)           <---------bZIP60(2) --------->ATERF1(1) -------ARR14(3)      --------->ARR14(2) --------->MYB52(1)         --------->O2      <---------ARR14(2) -----ZmHOX2a(2)      <---------ARR14(2)--------->TOE2(2)           <---------TGA1a   --------->ARR14(2) -------ARR11(3)      --------->ARR11(3)--------->TOE1(2)           <---------O2  <---------LBD16<--- ------>ARR11(3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->TGA1a  <------NtERF2 ->ANAC46      <---------DOF5.7(2)    >>>>>>>>>MYB2---------->DOF2  --------->ANAC46--------->LBD16   gatcttccatgtatggataacgacgatctccgccgcggaaaaccaacgaaccacaaagttttcggtgaagacgtcgcggttttagccggagacgcgctta  8085900  Previous    Next  AGI:  At2g18620.1    Description:  geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative. similar to GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT4G36810.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast/chromoplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q43133); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase (InterPro:IPR008949) Range:  from: 8085370    to: 8086442    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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