Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                            ---------                                                                                            ---------                                                                                      --------->AHL20(2)                                         --------->YAB1                               --------->ATHB51              <---------ANAC58          <---------ATHB12             --------->YAB1   -------->ATHB1              <---------ANAC58   <-----------GT1                    <---------ATHB12 <---------ATHB51  <-----------ARR10 <----------DOF2   --------->WOX13(1)          --------->WOX13(1) <---------YAB1 -----DOF2<----------DOF2 <----------DOF2<---------ICU4         <---------ATHB12     --------->ICU4   tgagactcttctctttgcttctctttcactttgaataacccaatcatcgttcttctaccctcacaaatcaatcaacaacatcatacaattattcacacaa  8081700                                               --------->MYB52(1)                                      --------->YAB1                                   --------->WOX13(1)  <----------DOF2                <---------ATHB12--------->ANAC58 >ANAC58                       --------->WOX13(1)--------->ANAC58 >ANAC58               ----------->RAV1(1)  --------->TOE2(3)                ----------->GT1 >ANAC46    <-------TEIL  ------->GAMYB     --------->TOE1(3)        <------ZmHOX2a(2)       <-------   gtttctttggaaaattcatgaattacaacagaacaatcactcaaaaccctaacgaaatttcattcagagagatcgaaactagttaaaaattgactatgaa  8081800                                                                                      ----------->GT1                                                                                     --------->DAG2                                                                                    ---------->DOF2                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                                <-------TEIL                                     --------->ARR11(3)                        --------->CCA1(2)                                ------>ZmHOX2a(2)                              --------->ARR14(1)               <---------LBD16 <------ZmHOX2a(2)                              --------->ARR11(1)     <---------YAB1           --------->MYB52(1)                              --------->ARR14(2)   <---------ICU4         --------->MYB52(1)                                  <---------ARR14(2)   --------->YAB1         ------>MYB83  <---------AHL20(2)                  ----------->ARR10  <---------ATHB12        ------>MYB46(1)                                   <---------TOE2(3) --YAB1 ------->TEIL--------->GLK1(1)<---------ARR11(3)       XXXXXXXXXXXXXXXXXXXX>MIR837-3P        <   acaaatcatgaatcttcttcggataaccaaacgatcggagattttatcaaatcggaaggaagaaacaaaaaaaaaactaagatacgaaaagtgaaaacga  8081900                                                                                                   --                                                                  <---------ZAT14                <---                                                             <---------ANAC58                    ----                                                         <---------DAG2                        ------           --------->At4g35610                          <---------HSFB2a(1)                  --------           <---------At4g35610                          --------->HSFB2a(1)    <------MYB83  <-------   ------>ZmHOX2a(2)                <------ZmHOX2a(2)  ------->TEIL  <---------YAB1----------->HVH21-  <------ZmHOX2a(2)           <----------DOF2      --------->At4g35610    --------->ATHB12<------ZmHOX2a(1) ---------GLK1(1)         <---------GLK1(2)---------->DOF2   <---------ANAC58  <------MYB46(1)-------   agagatcggagagagcttacgagttgcaaattctttagatcaatacaaagatgagcgaacctttcgtcttcactattgatttggttcgacgaggaacgaa  8082000                                                                                                   <x                                                                                                   <-                                                                                                   <-                                                                                                  <xx                                                                                                  <xx                                                                                                <----                                                                                              <------                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx       <----------DOF2                                                                <---------ANAC55(1)      <---------ANAC58                                                   --------->LBD16     <xxxxxxx      <---------ANAC58                                                  --------->ANAC46     xxxxxxxx    ------->TEIL      <---------GLK1(2)                              --------->GLK1(2)--------->ANAC55(2) ------->MYB52(1) --------->At4g35610                                --------->ARR14(2)      <------- ------MYB52(2)   <---------At4g35610                                <---------ARR14(2)    <---------ANAC46 ----->MYB46(3)   <---------ZAT2                                 --------->YAB1       <xxxxxxxxxxxxxx --->MYB52(1)   --------->SPL7  <---------ICU4                  <---------YAB1        <---------ANAC58 ->MYB46(3)    <---------MYB52(1)  <-----------GT1              *TSS<---------GLK1(1) <---------ANAC58 --MYB52(2)   --------->LBD16  --------->ICU4                <---------AHL20(2)       <---------ANAC46 ------>TEIL --------->ANAC46  <---------AHL20(2)        <---------AHL20(2)           <---------ANAC55(2) -->TOE1(2) <---------LBD16    --------->AHL20(2)        --------->AHL20(2)         <-----------GT1<-   cgaacgtagctttctccgtaagctgattctgaaaaaattacaacccttcttcaaactatatatataatgaaaatccgaaactaatattacgtgctgtggt  8082100                    --------->ARR14(2)                    <---------ARR14(2)                 <xxxxxxxxxxxxxxxxsmallRNA(i)                <---------ANAC46 --------->HSFB2a(1)                <---------ANAC58 --------->HSFC1(2)                <---------ANAC55(2)                <---------ANAC55(1)                --------->ANAC55(2)              xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxx>smallRNA(i)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxx>smallRNA(i)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------HSFB2a(2)  xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(i)   <---------HSFB2a(1) xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------ANAC46 <---------ANAC58 <---------HSFC1(2) --------ANAC58<---------LBD16 <---------GLK1(2)         --------->AHL20(2) xxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------AHL20(2) -----ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(i)          --------->AHL20(1)                           ---- ---MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(s)<---------MYB52(1)                                       ---- xxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------AHL20(1) xxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <---------AHL20(2) xxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         --------->AHL20(1) xxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <----------ID1            ---- --AtMYB61--------->ICU4xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            ----------->GT1         ------ xxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i) <---------AHL20(1)----------->GT1        <------- --------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i)      --------->AHL20(2) ---------->DOF2 --------->AHL20(2)   ttcgggcctggaaagattacgggtttcgcctcagaaccttctgttattcaaaaaaatattaaaaaaaaaaaaaaggaaaaactcattttattaggcctaa  8082200                                                                                               <-----                                                                                      <----------DOF2                                                  --------->HSFB2a(2)              --------->ARR11(3) ----->ANAC58                            --------->ANAC58                          <---------ARR11(1) ----->ANAC58                            --------->ANAC58                          <---------ARR11(3) ----->ANAC46                            --------->ANAC46        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->MYB52(1)                          ---------->DOF2          <----------DOF2   <---------CCA1(2) < --MYB59                    --------->MYB46(3)    <---------HSFB2a(2)   <----------DOF2      --------   cgaaactaaatgggcctactgacatacccatccatcgtttcaaaagcaacttgtagaaaaactaaacttttgggctttactcacatatcttttttctggt  8082300    <----------DOF2  ---------->ID1 <-----------GT1                                                  --------->ZAT6 ----MYB52(1)                                            --------->REM1(1)    <-----------GT1 <<<<<<<<<GT-3b        <---------YAB1              ------->GAMYB <---------At5g28300 ->HSFB2a(2)          <-----------GT1   --------->YAB1   --------->ANAC46 >>>>>>>>>>GT-3b           <   atttttctttttttgtctgtcaattttcattctcacttgaaaacataatacaacgctctacatcatttacagtaagaaaaataccatttagcctgttctt  8082400                                                                                           <---------                                         --------->ANAC58                                <---------ATHB12                             --------->DEAR3(1)                                        --------->WOX13(1)                            --------->ANAC46                                        --------->TOE2(3)                          <---------ALFIN1                                         --------->YAB1        <------MYB46(1)   --------->AtMYB61                                   --------->AHL20(2)        <------MYB83      --------->DEAR3(1)  <---------YAB1           <-----------GT1<xxxxxxxxxxxxxx    <XXXXXXXXXXXXXXXXXXXXXXXMIR829.1     --------->ANAC58       ----------->GT1   <---------ATHB12 ---------At4g35610    --------->ANAC46  --------->ANAC46    --------->ALFIN1 <---------AHL20(2)   gtagctcatttggtatgagggctaaacaccaccgcatgagttcaagtcatggtagaagaagatgaggggaaaaataccatttaaatcatcaattatccat  8082500                                                    <---------YAB1                                                   <---------TOE2(3)                                    --------->AHL20(2)  <---------MYB52(1)  --------->AHL20(2)  --------->ANAC55(2)                                  ------ <-------GAMYB    ------->TEIL      <---------AHL20(2)     <----------DOF2          --------->WRKY38(1) --GT1  <---------AHL20(2)     <---------YAB1    <---------AHL20(2)                 --------->WRKY12 xxxxxxxxxsmallRNA(si3)<---------AHL20(2) <---------ANAC55(2)  <---------TOE2(3)  <-------GAMYB------   tttcgttgatttaaaccatgaattttaaatttgatgaataaaatacttgattttatgttaactttaagttaaatcactaattttcgttgacaaaaccaac  8082600  Previous    Next  AGI:  At2g18600.1    Description:  RUB1-conjugating enzyme, putative. Identical to Probable NEDD8-conjugating enzyme Ubc12-like (RCE2) [Arabidopsis Thaliana] (GB:Q9ZU75); similar to RCE1 (RUB1 CONJUGATING ENZYME 1), small protein conjugating enzyme [Arabidopsis thaliana] (TAIR:AT4G36800.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82178.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 8080282    to: 8082064    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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