Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------ARR14(2)                                     --------->ZAT18                  <---------GLK1(2)                                 --------->ALFIN1                     --------->ARR14(2)          <-------TEIL          --------->TOE2(2)     ====================HOX2a_HOX2a   --------->ZAT18  <---------PCF2                <---------LBD16       <------ZmHOX2a(2)          ------>ZmHOX2a(2) <---------DEAR3(2)            ----------->RAV1(2)   --------->ARR11(3)      ----------->HVH21 ---------ZAT18           --------->YAB1             <---------ARR11(3) <-------TEIL    <---------ZAT18 ---------DEAR3(1)        <---------ICU4        --------->TOE2(3)   <---------TOE1(2)<---------MYB46(3) ------ANAC58            <---------ATHB12      <---------YAB1      ------>ZmHOX2a(1)<---------AtMYB61 ------ANAC58          --------->GLK1(1)<-----------RAV1(2)        =====================HOX2a_HOX2a   cgtgggctcgggttcacatagagagaaatcataacctggggcacaggttaccatagatcatccaatgtcctagattcgtctgatcgatggtggactatgc  7874500                             <-----------GT1                            <---------YAB1               --------->At4g35610                          <---------ICU4               --------->YAB1                <-------TEIL                       <------ZmHOX2a(1)   <---------AHL20(2)      ----------->GT1  <---------ANAC46          <----------DOF2<---------YAB1   --------->AHL20(2)    --------->ICU4   --------->ALFIN1 --- <----------DOF2    <---------AtLEC2      <---------AHL20(2)--------->At4g35610  <---------AtMYB61<--   cctctttcttctctttttttttgcaggattattacagaacataaataaatggcagaatcatcagcaaaaatgaaaaaaaacgagtggtgcatatgtagaa  7874600                                                                             --------->CCA1(2)                           --------->MYB46(3)                               <---------GLK1(2)                          >>>>>>>>>>>>>>>>>LFY                              --------->ARR14(2)                          --------->ANAC58                                  --------->ARR11(3)                          --------->ANAC58                                  <---------ARR14(2)                         ------->TEIL                                       <---------ARR11(3)                       <---------ZAT14                                    <---------TOE2(3)   ------>MYB83                       --------->ZAT18                        --------->WRKY12                ------>MYB46(1)           --------->At5g28300                           <-----------GT1  <---------YAB1    <--------        <---------LBD16<---------ZAT18          --------->MYB59           <---------TOE1(3)--------->ANAC46 ------>ARR11(3)       --------->ZAT14          <---------TOE2(3)         ----------->ARR10--------->ANAC58 -------ARR11(3)   <-----------GT1              <---------TOE1(3)  ------>ZmHOX2a(1)       --------->ANAC58   gatgtttcttcgcggtatttttgactgcacccattgttttcttcagtatttaggttttgtaacgttgtcctgtgttaagatttgcacagacatacccaac  7874700      <----------DOF2                       <---------AHL20(2)   <---------ARR11(1)                      --------->YAB1   <---------ARR11(3)                   --------->YAB1            <---------AtLEC2   ------->TEIL       <---------ANAC46----------->GT1  --------->ARR11(3)                         <--  <---------CCA1(2)  <XXXXXXXXXXXXXXXXXXXXMIR868     --------->ANAC58         --------->YAB1    ----- -MYB59        <-----------GT1   <------ZmHOX2a(1)   --------->ANAC58  ------->TEIL            <-----   ttctgtatcttttttttttacattgtttgtacttaggaacaagtataaaaatgggaagaaattgttgtccatggatgtaatcaaaacatttgtagggatc  7874800                             -------->HAHB4                             --------->YAB1                            --------->ICU4                            <---------YAB1                          --------->YAB1                                                    ---------                          <---------ICU4                                                   --------->ALFIN1                         --------->ICU4                                             <---------YAB1        <---------YAB1 --------->YAB1                                             --------->YAB1 -------CCA1(2)       <---------YAB1                                         --------->AHL20(2) ---->YAB1        <---------AHL20(2) <-----------GT1      <---------YAB1     <---------AHL20(2) -ZmHOX2a(2)    ----------->TBP   <---------ZAT6 <----------DOF2           <-----------TBP <---------REM1(1)   atatcatcttattattctatatatatgataatgatagtgtaacgtttcattctttttgttttgaatgtttcaaatctatttatatcatgacaagtgtagg  7874900                                                                 <----------DOF2                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                    <---------------AGL15                                                    <---------HSFB2a(2)                                                    --------------->AGL15                                                    --------->HSFB2a(2)                                                   <-----------------AG                                                   <-----------------AGL2                                                   <-----------------AGL3                          --                                                   <-----------------AGL1                         ---                                                 --------->ARR14(2)    ---------->ID1 <---------ANAC58                                                 <---------ARR14(2)  <-----------RAV1(1)          <--                                    --------->ZAT6 <---------LBD16 XXXXXXXXXXXXXXXXXXXX>MIR870   <--- >ZAT14   *TSS               <----------ID1   ------>ZmHOX2a(2)  <---------DAG2       <---------ANAC58   ctccagtttattctacttgtttttggaaaatgagacgaactctattgatcgtttctggatttggaaactttttgttgtttcttcgatttcgtttttgttg  7875000                                             <---------ARR14(2)                                             --------->ARR14(2)                     --------->TOE2(3)       --------->ARR11(1)                    --------->bZIP60(2)    ----------->ARR10                    --------->REM1(1)<------NtERF2--------->ANAC46                    --------->ANAC58 --------->ATERF1(1)                <---------At4g35610 <---------ATERF1(1)                <---------ZAT2      ------>NtERF2<---------LBD16                <---------HSFC1(2)--------->ATERF1(1)                --------->At4g35610<---------DEAR3(1)                --------->HSFC1(2)<------NtERF2<-------TEIL                                <---------ARR14(2)               --------->ANAC58   --------->RAP2.3(1)       <----------DOF2                --------->ARR14(2)         <---------MYB46(3)      <---------RAP2.3(1)<------NtERF2                         --------->At4g35610        <---------AtMYB61    ----------->HVH21--------->ARR14(1)                          <---------At4g35610 ---->ZmHOX2a(2)<---------HSFB2a(1)--------->DEAR3(1)  --------->ANAC58                  ----------->ARR10 ------>At4g35610   --------->ANAC58<-----------HVH21  --------->ANAC58             ------>MYB46(1) -------At4g35610  <-------TEIL  ------>NtERF2--------->CCA1(2)                     ------>MYB83   <- ------AGP1    --------->ANAC58 --------->ANAC46--------->ANAC46             <----------DOF2<------ZmHOX2a(2)   atctgagttgatggtggaagctacgtcaaatttgacgccgtcgcagagatacgcggcaagcgctttgtttgcaatcgcgcttaaccaagcgcagatcagc  7875100                                                                                            <--------                                                                                            <--------                                                                                           --------->TCP16(2)                                                                                          <---------PCF5                                                                                          <---------TCP16(1)                                                                                          <---------TCP11(2)                                                                                          <---------TCP20                           --------->LBD16                                            <---------LBD16                         <---------LBD16                                            =================                         <------NtERF2                                              ------>ZmHOX2a(2)                        ------>NtERF2                                              <---------GLK1(1)                        --------->MYB52(1)                                         --------->GLK1(1)                       <---------ALFIN1                                            <------ZmHOX2a(2)               --------->GLK1(1)                                                   ==================               --------->ARR14(2)                                                 <---------AGP1               <---------GLK1(1)                 --------->ZAT2                   <---------ARR14(2)               <---------ARR14(2)                <---------ZAT2  ==========================HOX2a_HOX2a              <---------GLK1(1)                  --------->At4g35610              <---------ARR11(3)    --------->ANAC58  --------->MYB46(3)       --------->YAB1    =========================HOX2a_HOX2a    --------->ANAC46 <-----------HVH21        <---------ATHB12   ------>ZmHOX2a(1)--------->ARR14(2)    --------->ANAC58 ------>NtERF2          --------->WOX13(1)   <---------CCA1(2)<-----------ARR10--  ---------->DOF2   --------->LBD16    --------->GLK1(1)       ------>ZmHOX2a(2)  --------->ARR11(3) <---------WRKY12   --------->ANAC46--------->LBD16   ----------->RAV1(1)        <------NtERF2     <- <---------WRKY45  --------->LBD16 <---------ANAC46  ----------->HVH21           <---------ARR14(1)-- <---------WRKY38(1)------>NtERF2 <---------LBD16<---------At4g35610             <---------CCA1(2) <- ----------HVH21  <---------LBD16--------->MYB52(1) --------->At4g35610       <---------LBD16  ------   cagtcaaagccattgggaatcccggccaccggaagtaccggagagccaatcagcagcgacagtgatcctatctccgatgaggcggatctctgggtccacg  7875200      ------>NtERF2     ------>NtERF2     --------->LBD16    <---------RAP2.6(2)                      <---------HSFB2a(2)   <---------LBD16                         --------->At4g35610 <---------ARR14(2)        --------->At4g35610 -WRKY12 <---------ATERF1(1)               ----------->RAV1(2) -WRKY38(1) ============================HOX2a_HOX2a ==================HOX2a_HOX2a   ------>ZmHOX2a(2) ==================HOX2a_HOX2a <---------ARR11(3) ------->HSFB2a(1)         <---------At4g35610 --------HSFC1(2)        <-----------RAV1(2) --------->HSFB2a(2)  <---------ANAC58 ------->HSFC1(2)  =====================HOX2a_HOX2a               <---------ANAC58               ---- --------HSFB2a(1) ------>ZmHOX2a(1)    <---------ATHB12   <-------TEIL                          ---- --->ANAC46 ------>ZmHOX2a(1)  --------->ARR11(3)       --------->ICU4                           <---   aagtttccggcctcctccgtcctgttctcaggtgatcttgaaatcatctggaatagtcatgttcatatgcgtctctgtgtgtgtaatgtatacattttga  7875300                                                                                                    <                                                                                                    -                                                 <---------ANAC58                                   -                                                 <---------ANAC58                                  --                                           --------->ZAT2                                        <---               <----------DOF2             <---------ZAT2                                       <----              <---------ANAC58       <-------TEIL<---------AtLEC2                         <------ZmHOX2a(2) ----->ZAT2   <---------ANAC58  <---------WOX13(1)                 --------->At4g35610  <------ZmHOX2a(1) ----->At4g35610    <---------At4g35610    --------->At4g35610     <---------At4g35610<---------TOE2(3) ------At4g35610    --------->At4g35610 <---------At4g35610        <---------ZAT2     <---------TOE1(3)   gctgtctctgtaatttgctttcagatgtcttcagattgattcatcagcttggcatggccttgaagagatagctgcttctactcaggctaaggatcacatc  7875400  Previous    Next  AGI:  At2g18090.1    Description:  PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48259.1); contains InterPro domain GYF (InterPro:IPR003169); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) Range:  from: 7871396    to: 7874848    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g18100.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36210.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36210.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO48261.1); contains InterPro domain Protein of unknown function DUF726 (InterPro:IPR007941) Range:  from: 7874910    to: 7878724    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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