Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                ------>ZmHOX2a(1)                                              <----------DOF2                                          ------->PIF5                                          <-------PIF5                                      <-------TEIL                                      --------->ZAT18                                      <---------ZAT18                                   <------MYB83                                   <---------ANAC46                                   <---------ANAC58                                   <---------ANAC58                                   <------MYB46(1)<---------HSFB2a(2)                                  --------->MYB111(1)                                  --------->MYB46(2)                             ----------------->AGL1                         <---------ANAC58--------->ANAC46             ------>ZmHOX2a(2)  <---------MYB52(1)--------->HSFB2a(2)       --------->YAB1 <---------GLK1(1)  --------->ANAC58                                    <-------       <---------AtLEC2  <---------ANAC58--------->ANAC58                   --------->WOX13(1) -------MYB52(1)      --------->GLK1(1) ------->TEIL                 ------>ZmHOX2a(1)      ---------   ggtactcatgcatgatccaatcggatttcttgccattaggtgcacgtcctttgtagaacacaagtgttttcctcataccaattagttttgttttgtcgta  7857000                                                                      <---------CCA1(1)                    <---------ANAC58                             <---------MYB52(1)                --------->LBD16                                 <-------GAMYB               <---------O2                                   <------NtERF2       ------>ZmHOX2a(1)   <----------DOF2  <---------ANAC58                   <---------ANAC58        ---------->ID1    <--- --ANAC46      --------->O2                            <---------ANAC58    <---------ANAC58  -------- ->ID1 ---------->ID1<----------DOF2                 --------->ARR11(3)    <---------ANAC58  <-------   aacagctttgtctcttcccgtggctttccaaaatccagccatggtcgctctattagttcttgtccccgttggatatttcttgtccttgtgactaaaaaaa  7857100                                                                                                -----                                                        <---------TOE2(3)                      ------                                      <---------ANAC55(2)                                  --------->RVE1(1)                                      --------->ANAC55(2)                           ----------->GT1                                      ----------->GT1   <---------TOE1(3)         ---------->DOF2   <---------ATHB12     --------->ARR14(2)     <---------AHL20(2)          --------->TOE1(3)--------- --------GT1            <---------ARR14(2)     --------->AHL20(2)     --------->AHL20(2)   --------->CCA1(1) ->AHL20(2)        --------->MYB52(1) --------->HSFB2a(2)     --------->ICU4    --------->MYB46(3) --AHL20(2)    ------>ZmHOX2a(1)      <---------HSFB2a(2)----------->GT1   --------->TOE2(3)<--------   taccattcattttgttcctcataaccgattcgacattgttctgtaacatttaaaatttaaggtgataatcaataaaaccttaaccaaagtaaaatatctc  7857200           <---------MYB52(2)                                             --------->WOX13(1)          --------->ANAC58                                              <------ZmHOX2a(2)          <---------ANAC55(2)                                           =============================        <--------P                                              <---------O2       <---------MYB52(1)                                       <---------ANAC46      <------MYB83                                              --------->O2      ----------->GT1   <------ZmHOX2a(2)                       <---------bZIP60(1)      <---------HSFB2a(2)------>ZmHOX2a(2)                      <---------bZIP60(2)      <------MYB46(1)  --------->ARR11(3)                       --------->bZIP60(1)     --------->MYB59   <---------ARR11(3)                      ----------->STF1  <---------SPL7       --------->ARR14(2)                     <---------TGA2(2) --------->ALFIN1      <---------ARR14(2)                    ----------->HVH21 ---->MYB52(1)     --------->REM1(2)                         ----------->TGA1                       - ----->HVH21 <-----------GT1                               --------->At4g35610                     -- >ARR11(3)--------->ANAC58                                 <---------At4g35610<----------DOF2      -- -ARR11(3)--------->ANAC55(2)                   <------ZmHOX2a(2)      <---------ARR11(3)    <-------   acggtgttcggtaagtaaccttgtagatcccatggttctattctgtagagatcgatgtctctgatgacgtcgagatcaatcttttgcgatgcgattttct  7857300                   --------->ARR11(3)               ---------->DOF2            --------->ANAC46                                                                   ------            <---------ETT(1)    <---------SPL7                                                 ------            ----------->HVH21   <---------MYB46(3)                                            -------     --------------->AtSPL8     <---------DEAR3(2)                                           --------     <---------------AtSPL8   <---------MYB52(1)         --------->ANAC58         --------->ATHB51 ======HOX2a_HOX2a <---------ARR11(3)                 <------ZmHOX2a(1)           <---------ICU4 ----->ZmHOX2a(1)--------->ANAC58        --------->TOE2(3)              <---------MYB52(1)--------->REM1(1) ------------->AGL15       --------->SPL7<---------MYB59 --------->ANAC58        <---------MYB52(1) ------->TOE2(3) --------->ANAC58<-------GAMYB   ------>ZmHOX2a(1)  <<<<<<<<<<<<<<<<<LFY  --------->ANAC46 ----GT1   --------->MYB46(3)<-----------HVH21  <---------LBD16    --------->GLK1(2) <-----------GT1   tccttagatagtacccgacaagctcttcgtccgtcggatggaacctaaatcctggaggaacgctacaagattccattggctccattatttctacaccaac  7857400                                        --------->ANAC58                                        --------->ANAC58                                       ------->TEIL                                   <---------------AtSPL3                                   ---------                          --------->AHL20(2)                                            <------ZmHOX2a(2)                          <---------AHL20(2)   <---------GLK1(2)                       <---------ARR11(3)                          ----------->TBP----------->GT1                              <---------At4g35610 >MYB46(1)            --------->YAB1   <---------LBD16                         <---------YAB1 >MYB83               --------->AHL20(2)--------->ANAC46                    <---------AHL20(2) ---->RAV1(1)      --------->YAB1  <---------------AtSPL8   <---------ANAC46--------->AHL20(2)    <-- ->AtMYB61       ------------>CBF<-------TEIL<---------KAN4(2)          <-----------TBP--------->ARR11(3)   aaaatgaaacaccaaaatgaacaataatataaatatacatgtacggaaatattctcttattttcgtctatacttatatataatttttgagatcacaacat  7857500                   --------->YAB1                  <---------ATHB12          --------->ARR14(3)          <---------AGP1          --------->ARR11(3)          <---------ARR14(3)          --------->ARR14(2)                                            ----------->GT1          <---------ARR14(2)                                <---------YAB1          <---------ARR11(3)                                ----------->GT1           <----------ID1      <---------At4g35610--------->TOE2(2) <------NtERF2  --------->YAB1XXXXXXXXXXXXXXXXXXXX>MIR1888    <---------HSFB2a(2)  --------->TOE1(2)----------->RAV1(1)           --------->At4g35610 -->RAV1(1)<------ZmHOX2a(2)              ------>NtERF2  --------->ICU4--------->ANAC58 -------YAB1------>ZmHOX2a(2)            <----------ID1<----------DOF2 --------->ANAC58             -   atgatttcagaagatctcaaatgataacatgggatagtggaaggcgacatattagagctataatgaaaaacataagctaaattttgtgaagacaaataag  7857600                             --------->YAB1                        <---------YAB1                      --------->YAB1                     <---------YAB1                     --------->ICU4                   --------->YAB1                  --------->AHL20(2)                  <---------AHL20(2)               <---------AHL20(1)               --------->AHL20(1)          >>>>>>>>>>GT-3b --------->WOX13(1)                --------->DAG2                      -----       ----------->GT1<---------ICU4                       ---------->DOF2                     <-----   --------->YAB1 <---------YAB1  <---------ANAC58      --------->YAB1                         ------ -------->YAB1--------->AHL20(2)  <---------ANAC58<---------ARR11(3)                       <---------YAB1   aagaataagaagaaaaatatataattatcattcatagagtgctatctaacaaaatcatttataaagtactcgagagatagttgacaaaatgttatgagat  7857700                                                                            --------->YAB1                                                                           <---------YAB1                                                                         <---------ICU4                                                                         --------->YAB1                                                                         -------->HAHB4                                 <---------ALFIN1                     <---------ICU4            <----                            --------->GLK1(1)                         <--------HAHB4            <----                            <---------GLK1(1)             --------->YAB1--------->ICU4   --------->ANAC55(2)                        --------->At5g28300       <-----------GT1    --------->ICU4      <---------ANAC55(2) ---->CCA1(2)       <---------ANAC46             <-----------GT1 --------->AtLEC2       <-------TEIL< ----ARR11(3)       <---------ANAC58            --------->AHL20(2) --------->YAB1   ----------->GT1 - --->ARR11(3)       <---------ANAC58            <---------AHL20(2)<-------TEIL<---------YAB1   <-----   ataagcatatataaaactcatttcgtggtgaattcccacttgctcaccatttaaactctctcataacatgcataattatgatcaataagttacatatttt  7857800                                     <---------AHL20(2)                        --------->TOE2(3)                       --------->ANAC58                       --------->ANAC55(2)     --------->AHL20(2)--------->ANAC46     <---------AHL20(2)----------->GT1    <---------AHL20(2) <---------ANAC55(2) <---------AHL20(2)    --------->ANAC58 --------->AHL20(2)    --------->ANAC55(1)                                                      ----- -----AHL20(2)<-------TEIL      <---------ARR11(3)                                            ------- -----YAB1<-------TEIL<-------TEIL<---------ICU4                                              <------ ---------AHL20(2)  --------->TOE2(2)<-----------GT1 <---------TOE1(3)                   --------->YAB1 -------->AHL20(2)<-------TEIL  --------->ARR11(3)   --------->MYB59             --------->At4g35610 ----AHL20(2)--------->AtLEC2  --------->YAB1        <---------TOE2(3)  <---------ATHB12<------ZmHOX2a(2)   tattaatttatatacatgcatacatacgtaaaatgatatttacatgtatgaaatttaggttttgagttgaagaaatcaagatgagatgcgatcataacaa  7857900  Previous    Next  AGI:  At2g18060.1    Description:  VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1); transcription factor. similar to ANAC076/VND2 (VASCULAR-RELATED NAC-DOMAIN 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G36160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48242.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) Range:  from: 7855481    to: 7857385    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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