Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ------>ZmHOX2a(2)         <---------WOX13(1)              <---------GLK1(1)       <---------MYB46(3)               --------->ARR11(3)            <---------ANAC58      <---------YAB1                    <---------AGP1                <---------ANAC58       <-------   --------->ALFIN1                     <---------ARR11(3)            <---------ANAC46 <---------MYB52(1) <---------ANAC58                <----------DOF2      <---------ARR14(2)           <-------TEIL<----- <---------ANAC58        <---------ANAC58<------ZmHOX2a(2)  <----------DOF2       --------->GLK1(2) <---------ANAC46        <---------ANAC58--------->GLK1(1)  <---------DAG2       <---------ARR14(2) -------->ATHB12      <XXXXXXXXXXXXXXXXXXXXMIR863-3P  --------->ARR14(2)         --------->ARR14(2)   cttgagtggtgattgttcagcgttttgtcttgtttcttttaagatctctcaaatagtatatgctttttgttttcttgtaagaagattcagttagactttc  7848800                                                        --------->AHL20(2)--------->AHL20(2)                                                      --------->AHL20(2)--------->AHL20(2)                                                    --------->AHL20(2)--------->AHL20(2)                                                    <---------AHL20(2)<---------AHL20(2)                                                  <---------AHL20(2)<---------AHL20(2)                                                  --------->AHL20(2)--------->AHL20(2)                                                <---------AHL20(2)<---------AHL20(2)                --------->ATHB12              <---------AHL20(2)--------->AHL20(2)                <---------ICU4              <---------AHL20(2)--------->AHL20(2)               --------->ICU4             --------->AHL20(2)--------->AHL20(2)       <---------ICU4                     <---------AHL20(2)<---------AHL20(2)<---------AHL20(2)      <---------YAB1                    --------->AHL20(2)--------->AHL20(2)--------->AHL20(2)      -      --------->ICU4                    <---------AHL20(2)<---------AHL20(2)<---------AHL20(2) <-----    <--------HAHB4                   <---------AHL20(2) <---------AHL20(2)<---------AHL20(2)  <------    --------->YAB1                  --------->AHL20(2)<---------AHL20(2)<---------AHL20(2)    <------   <---------YAB1              --------->YAB1 --------->AHL20(2)<---------AHL20(2)           -------- ---DOF2 <---------YAB1      <---------WOX13(1) --------->AHL20(2)--------->AHL20(2)        <-------- ----YAB1<---------TOE2(3) --------->ATHB12 --------->AHL20(2)<---------AHL20(2)          <----------DOF2   attgtatcattatggtattgattaccaattcattgatattatatatatatatatatatatatatatatatatatatatatatatatgatatactttgatt  7848900                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                    <---------LBD16                              ------->TEIL                                        --------->ARR11(3) -------->WOX13(1)         <---------YAB1                                       <---------HSFB2a(1) ----WOX13(1)        <----------DOF2                     <------MYB83           --------->HSFC1(2) ---ANAC58     <---------KAN4(2)                <---------YAB1                  --------->HSFB2a(1) ---ANAC58     <---------ARR14(2) <----------DOF2--------->YAB1                 <---------HSFC1(2) ->ATHB12      --------->ARR14(2) ------>ZmHOX2a(1)      <------MYB46(1)      ---------->DOF2 -YAB1         ---------->TaMYB80--------->TOE2(3)     <---------MYB52(1) ---------->DOF2  --------->ATHB12   gccaatctctcacatagaatatgctttttatgaatcctttacatcttagtatcatcagttggtattttcgcaaatacaaagaaagttctggggtgatttg  7849000                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                 ----        --------->ATHB12                                                                         ----      <---------TOE2(3)                                                                          ----     --------->YAB1                                                                              <---     --------->MYB52(1)                                                                          <---     <-----------GT1                                                      ----------->GT1      ------  --------->YAB1             --------->ICU4       --------->ICU4        --------->LBD16        ------  <---------ICU4        ----------->GT1    <---------ANAC46            <---------LBD16       -------- <---------ATHB51   <---------YAB1         <---------ANAC58     ---------->DOF2          --------->MYB52(1) <---------ATHB12  --------->AHL20(2)      <---------ANAC58   --------->YAB1         <---------ICU4--   tcaataataacgatttgggatttttatagtaaatattgtaagtttgggtgtgatttttaaaaaatcaaaagttccagggttatttcataaataccgaaag  7849100                                                            --------->LBD16                                                           <---------HSFB2a(2)                                                           <---------LBD16                                                          <---------LBD16       <-------GAMYB                                      ------>ZmHOX2a(2)      <---------DEAR3(2)                                 --------->CCA1(2)              --------->ALFIN1      <---------MYB46(3)                                 <------ZmHOX2a(2)             ------>ZmHOX2a(2)     <---------RAP2.6(2)                                 --------->ARR14(1)           <------ZmHOX2a(2)     <---------DEAR3(1)                                 --------->AGP1                --------->CCA1(2) --------->LBD16                -------------->OsCBT    --------->ARR11(1)           <---------ARR11(3) ----ZmHOX2a(2)                 --------->ALFIN1        --------->ARR11(3)           <---------ARR14(3) ------>ARR14(1)               --------->LBD16          <---------ARR11(3)           --------->ARR11(3) ------>CCA1(2)               <---------ANAC46          --------->ARR14(2)           --------->ARR14(3) ----->ARR11(3)               <---------ANAC58          <---------ARR14(2)           --------->ARR14(2) ----->ARR11(1)               <---------ANAC58        ----------->ARR10              --------->AGP1 ----->ARR14(2)              ------>ZmHOX2a(2)<---------ARR14(2)                     <---------AGP1 ------ARR14(2)             <------ZmHOX2a(2) --------->KAN4(2)                  ---------->DOF2 ------ARR11(3)            --------->ARR14(2)<----------TaMYB80              <---------At4g35610 --->HSFB2a(1)             <---------ARR14(2)<---------KAN4(1)               --------->At4g35610   <- ----->ARR10     --------->ARR14(2) <---------MYB46(3)--------->HSFB2a(1)--------->ARR14(2)        <- -->DOF2   --------->YAB1 <---------GLK1(1) ---------->TaMYB80           ------->TEIL<---------ARR14(2) ---->ZmHOX2a(2) <---------ARR14(2)<---------AtMYB61---------->DOF2      <---------ARR14(2)        <-   atccgaggcggtttcatcatatactgggcgatccgtggtggtttcgaatataccgaaagatccgggagcattttgaatctgctgaaagatctggggcgat  7849200                                                                  --------->ANAC58                                                                  ------------------------>ANAC81  <-                                                                  --------->ANAC58                 <-                                                                 --------->DAG2          --------->LBD16                                                       --------->YAB1                   --------->RRTF1(2)                                                       <---------ICU4                   --------->RAP2.3(3)                                                       <--------HAHB4                   --------->RAP2.3(2)              <---------ARR11(3)                       --------->ATHB12                 --------->ANAC58              --------->ARR11(3)                      --------->ICU4                    --------->RAP2.6(2)             --------->RVE1(1)                        <---------YAB1                    --------->ANAC58             --------->CCA1(1)  ----------->HVH21     <---------ATHB12  --------->YAB1  ----------->GT1  <---------TOE1(2)         <---------ANAC58   <---------------------WRI1              --------->RAP2.3(1) --------ANAC58             <---------ANAC58  *TSS  --------->YAB1----------->GT1    <---------ARR14(2) --------ANAC46     ----------->GT1         <---------ATHB12    ---------->DOF2      --------->ARR14(2) --------ANAC58  <-----------RAV1(1)    ------------>CBF    <---------TOE2(3)    <---------At4g35610   ttcgtagataccaaaatatctgtggtgatttcgtctcacagtttcaatcgtcgataatcattagggtaaagcaaaaatagtgaagcagagccgcaaaaac  7849300                                                            <---------ALFIN1                                                          ------>ZmHOX2a(1)                               ------>ZmHOX2a(2)          ===============HOX2a_HOX2a                               ==================================HOX2a_HOX2a                              <------ZmHOX2a(2)   --------->MYB59                             -------                             --------->ARR14(2)<---------ARR14(2) ====================HOX2a_HOX2a            --------->MYB52(1)===================================HOX2a_HOX2a                  <------ --------DAG2                <---------ARR14(2)--------->ARR11(1) <------ZmHOX2a(2)  ---------->DOF2 ---------DOF2           <-------TEIL  ---------->DOF2   --------->ANAC46      <------ZmHOX2a(1)   acttttcccaaaatcaacgaagatagattcagatcggaagcgaaagaacgattcggtctcctccacagatcgaacatcgaaggagaagaaagaccatcat  7849400                                                                                              <------                                                                                       ---------->DOF2                                                                                      ===============                                                             <---------YAB1           ===============                                                       <---------TOE1(2)              <------ZmHOX2a(1)    --------->ANAC58                               --------->At4g35610          --------->HSFB2a(2)    --------->ANAC46          <------NtERF2        <------NtERF2                <---------LBD16    --------->ANAC58        <---------ANAC58       <---------At4g35610          <---------HSFB2a(2) -->YAB1                    <---------ANAC46  <---------TOE2(3)             <---------GLK1(2) <------ ---ICU4   ---------->DOF2  <---------ANAC58  <---------TOE1(3)           <---------TOE2(3) <--------   cacaacaagcatcgaaagaagagcaagatggcgtcgagagaccaagttaaggcatcgcacattttgattaagcatcaaggttctcggaggaaagcgtcgt  7849500                                                       <---------At4g35610                                                       --------->At4g35610 --------->ARR11(3)                                                    <---------At4g35610    <---------ARR14(3)      <---------HSFB2a(2)                        --------->WRKY38(1)       <---------ARR11(3)     ------>ZmHOX2a(2)                          <---------MYB52(1)         --------->ARR14(2)    <------ZmHOX2a(2)                          <-------GAMYB               <---------ARR14(2)   --------->ARR14(2)                         --------->DEAR3(1)           --------->ARR14(3)   <---------ARR14(2)                       ------>NtERF2                ----------->ARR10   --------->ARR11(3)                      --------->DEAR3(1)          --------->REM1(2)  <------ZmHOX2a(1)                        --------->RAP2.6(2)       --------->LBD16 <---------HSFC1(2)                        --------->RAP2.3(2)      <---------ANAC55(1) --------->HSFC1(2)<---------KAN4(1)       --------->RAP2.3(3)      <---------ANAC58 --------->HSFB2a(1)                      --------->ATERF1(1)       <---------ANAC58 <---------HSFB2a(1)--------->KAN4(2)     --------->ERF1            <---------ANAC46  --------->LBD16 ---O2--------->HSFB2a(2)                 --------->DEAR3(2)        <---------ANAC55(2)         <---- ===========HOX2a_HOX2a        --------->ZAT6<------NtERF2         ------>ZmHOX2a(2)  ------>NtERF2 ==========HOX2a_HOX2a  <---------YAB1    --------->RAP2.3(1)     <------ZmHOX2a(2)  --------->ANAC46 ---ANAC46         --------->KAN4(1)     <---------ATERF1(1)     --------->ARR14(2)  <---------ETT(1) ---HVH21         <---------YAB1         --------->At4g35610     <---------ARR14(2) <---------LBD16   ggaaggatccagaagggaagattattctgactaccactagagaagccgccgttgagcagcttaaatcgatccgtgaagatattgtctccggcaaggcgaa  7849600                                                       ------>ZmHOX2a(2)                                                     <---------ARR11(3)                                                     --------->ARR11(3)                                                   ----------->ARR10                                                  <------NtERF2                                                  --------->At5g28300                                                 <---------MYB46(3)                                                <---------DEAR3(1)                                                <---------ANAC46                                               <------NtERF2                                               <---------ABI4(1)                                               ------>NtERF2                                    -----            ------>NtERF2                    <---------DEAR3(1)                                 <----           <---------ANAC58                 <---------LBD16                          <------ZmHOX2a(2)           <---------ANAC58                --------->ANAC46             --------->TOE2(3)       <----        --------->ALFIN1             --------->At4g35610        ---------->ID1       ================ -----ARR14(2)                       <---------At4g35610      <---------MYB46(3)    <---------ARR11(3)   tttcgaagaagtggcgactcgtgtttctgactgtagctctgctaaacgcggcggtgatcttggtttgttcttatccctaatctctagatcagcgagttta  7849700  Previous    Next  AGI:  At2g18030.1    Description:  peptide methionine sulfoxide reductase family protein. similar to PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1), peptide-methionine-(S)-S-oxide reductase [Arabidopsis thaliana] (TAIR:AT5G61640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48234.1); contains InterPro domain Methionine sulphoxide reductase A; (InterPro:IPR002569) Range:  from: 7847190    to: 7848905    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g18040.1    Description:  PIN1AT (parvulin 1At). Identical to Peptidyl-prolyl cis-trans isomerase 1 (PIN1) [Arabidopsis Thaliana] (GB:Q9SL42;GB:Q42334); similar to peptidyl-prolyl cis-trans isomerase PPIC-type family protein [Arabidopsis thaliana] (TAIR:AT1G26550.1); similar to parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus] (GB:CAM59671.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, PpiC-type; (InterPro:IPR000297) Range:  from: 7849246    to: 7850952    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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