Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->LBD16                                    --------->ANAC58                                    --------->ANAC58                                    --------->ANAC46                                    --------------->AGL15                                          --                                   <-----------------AGL1                                     <------          <---------YAB1           <---------LBD16                                         --------->GLK1(2)     <---------TOE1(2)             <-----------------AG               --------->ARR14(2)  <---------GLK1(2)    ------>ZmHOX2a(1)            ------->TEIL  --------->DAG2         <---------ARR14(2)<---------YAB1  --------->YAB1                 --------->ARR14(2)                  <------ZmHOX2a(1)<-----------GT1 ------->WOX13(1)                <---------ARR14(2)                <---------TOE2(3)  --------->MYB52(1) ---ZmHOX2a(2) --------->YAB1 <---------ATHB12---------->DOF2      <---------TOE1(3) --------->TOE1(2)   tcaatcctagttttcattcacaattcaatctaatgaatccgcaaatggaaaagggcatttgaaagttttaaggatttgaactcagaacttacgattctga  7830800                                                                                            <------ZmHOX2a(2)                                                                                            =========                                                                                           <---------ARR11(3)                                                                                           <---------ARR14(2)                                                                                           --------->AGP1                                                                                           --------->ARR14(2)                                                                                           <---------                                                                                          --------->At4g35610                                                                                          <---------At4g35610                                                                                       <---------ZAT18            <---------ANAC58                                                --------->MYB52(1)     <---------TOE1(2)                                                  ---------->DOF2<---------ZAT14    ------>ZmHOX2a(1)                         ---------->DOF2     <------ZmHOX2a(1)    --------->ZAT14  --------->YAB1                       --------->ANAC58           =================================HOX2a_HOX2a ------->WOX13(1)                      --------->ANAC58        --------->CCA1(2) ------->TEIL     --- ---YAB1    <---------ANAC58   --------->GLK1(2)            <---------TOE2(3) <---------MYB52(2) ----   tcaatcctagttttgcttctagttcattagcacaatctgggaagctataaaagaattgaattgagataggagaagaaagaacgaaccagtgcagatccaa  7830900            --------->ANAC58                                           <-----------HVH21      <---------TOE1(1)                                             <---------At4g35610       <------      <---------TOE2(1)                                            ------->TEIL          --------->ANAC58    --------->CCA1(2)                          --------->YAB1 <---------ANAC58           --------->ANAC58   --------->ARR14(2)                         <---------YAB1  <---------ANAC46      ------>ZmHOX2a(2)   <---------ARR14(2)                     <---------YAB1      <---------ANAC58      ================= ================HOX2a_HOX2a           <---------YAB1        <---------At4g35610    ================= --ARR10  <------ZmHOX2a(1)          <--------HAHB4          --------->ZAT2       <---------ARR11(3) ---->GAMYB --------->ANAC58         --------->YAB1          <---------ZAT2    <---------KAN4(2) ----->MYB46(3)                     <---------YAB1           --------->At4g35610  --------->ARR11(3)-   tcgccgatacgaggaagccacttagagtttggagaagtattattatccatgataagacgaggctgcttgcatctgttacagaatgatctaaacgcataat  7831000                                                                                       *TSS                                                                                       ------>NtERF2                                                                                    ------>NtERF2                                                                                   --------->DEAR3(1)                                                                                  --------->ATERF1(1)                                                                                  <------NtERF2                                                                                 <---------ATERF1(1)                                                            --------->LBD16      ------>NtERF2                                                           <---------HSFB2a(2)  ----------->HVH21                                                           --------->ANAC46     --------->DEAR3(1)                                                           --------->LBD16      <---------DEAR3(1)                                                           --------->HSFB2a(2) --------->ATERF1(1)             ------>ZmHOX2a(1)                            <---------HSFB2a(2) --------->LBD16 ---ICU4    --------->TOE2(3)                        <<<<<<<<<TBF1            <---------ATERF1(1) ===================HOX2a_HOX2a        <---------ANAC58   --------->HSFB2a(2) ------>NtERF2 ======HOX2a_HOX2a                     <---------ANAC58   <---------LBD16    <---------DEAR3(1) ----->ZmHOX2a(1)<---------ICU4------>ZmHOX2a(1)<---------CCA1(2)           <---------LBD16     <----   tcctgtttctgcatcctaaacattcccagtctccttctcttccgtctcccatttcttcttcccggaaaaactccagtctccggcgacgacgactcactct  7831100                                                                 <---------O2                                                   ----------->RAV1(1)                                                <---------PCF5   ----------->GT1               ---------->DOF2              <---------ZAT2     --------->ZAT14 <---------ANAC58        ---------->DOF2    --------->ZAT2     <---------ZAT14 <---------ANAC58  ---------->DOF2       ---------->DOF2 <---------MYB46(3)    <---------MYB52(1) ------DOF2 <------ZmHOX2a(1)      ---------->DOF2 <---------ALFIN1----------->HVH21     --------->AHL20(2)   ttttcgttcagagaggagaaagaaagagaaagttgaagaaagctaaagctgggccacatttgttgtgaagtgactaggcccattaggcccattaatttct  7831200                                            <---------ANAC58                                         <---------MYB52(1)                                       --------->YAB1                                       <---------ICU4                                  <------NtERF2                                  ------------>CBF                                --------->ALFIN1                               <-------PIF5 --------->ANAC55(2)                   ------>ZmHOX2a(1)  <---------ATHB12                ---------->ID1 ------->PIF5--------->MYB52(2)              <---------ANAC58--------->At4g35610              <---------ANAC58<---------ZAT2<---------ANAC58           <----------DOF2    <---------At4g35610       --------->RVE1(1)      --------->ZAT2<---------ANAC55(2)      --------->GLK1(2)      <---------TOE1(2)                         <----------DOF2      --------->ARR11(3)     <---------TOE2(2)           --------->ARR11(3)      <---------ARR11(3)    <-----------RAV1(2) *TSS   <-------TEIL    <---------YAB1   tcagagaaaatctctttcgtccttctcttcgcaggtggcaatcgttacttactgacatacatcttcatcagtgatttttgggtttgaaatttctctagat  7831300                 <----------DOF2              ------>ZmHOX2a(2)             <------ZmHOX2a(2)             <<<<<<<<<GATA-1                 <---------GLK1(1)             <<<<<<<<<GATA-4                <---------ARR14(2)             <---------GLK1(1)              --------->ARR14(2)             <<<<<<<<<GATA-2                --------->ARR11(3)         ---------->DOF2             <<<<<<<<<GATA-3                <---------AGP1         <-------TEIL            --------->ARR11(3)           <---------TOE1(2)        --------->CCA1(2)            <---------ARR11(3)        --------->ATHB12   ---------->DOF2          <----------DOF2            <---------AGP1     <----------DOF2------>ZmHOX2a(2)  <---------ARR14(2)           <---------CCA1(2)   <---------DAG2<---------At4g35610 --------->ARR14(2)      ----------->HVH21   cgattttggatttagatctctttgtttctactgcttttcatcgttggatctgcgttttgcaaagggagatacagaaaggaatagctttgaattgacaagg  7831400                       --------->ANAC58                 --------->GLK1(2)                 ------->TEIL                 <---------ARR11(1)                 <---------ARR14(2)                 --------->ARR14(2)                <---------ARR14(1)                <---------CCA1(2)                <---------GLK1(2)              ------->GAMYB                                             <----------DOF2            ------>MYB83                                           <-----------GT1            -------->P --------->ANAC58                     ----------->GT1            ------>MYB46(1)                   <-----------HVH21   <---------ICU4               ------           --------->MYB52(1)<---------AtLEC2--------->ANAC46    --------->ICU4                <-----   tttctctctaatccaaccgaatctcaagcttccatggctctcaatctccgtcagaaacagactggtaattatctctttataatctcaagtttctgcgatg  7831500                                                 --------->GLK1(2)                                  -                                                 --------->ARR14(2)                                 <                                                 <---------ARR14(2)                                 <                                                <---------GLK1(2) <---------ARR14(2)                -                                               <------ZmHOX2a(1)  --------->GLK1(1)      <---------ICU4                                             <---------TOE2(3)    <---------GLK1(1)    <---------YAB1                 <---------GLK1(2)<---------AHL20(2) ----------->GT1            <---------YAB1      < --->ICU4<---------ANAC58        --------->AHL20(2) <---------HSFB2a(2)     <---------ANAC58       <- ----YAB1<---------ANAC58        <---------AHL20(2) --------->HSFB2a(2)     <---------ANAC58 --------   attcttctattgcttcatagattgtgttcgatctattaatttgtttttaggaatctggaaatttagagaattctggtttcttatgagttaatattgatat  7831600         ------>ZmHOX2a(2)       --------->ARR11(3)   <----------DOF2                                           ------>MYB46(1)  ------>ZmHOX2a(2)                                          -------->P -------->ARR11(3)                                           ------>MYB83 ---------AGP1                                             <---------MYB59 ---------ARR14(2)                           <---------MYB46(3)                        --------->SPL7 -------->ARR14(2)                        --------->LBD16  --------->AtMYB61   --------->ARR14(2) ---------ARR11(3)                      <---------LBD16   --------->DEAR3(2)   <---------ARR14(2) --------CCA1(2)               --------->GLK1(2)          --------->MYB46(3)--------->ALFIN1 ->ARR11(3)                   <---------GLK1(2)    ------->TEIL--------->TOE2(3)<---------GLK1(1)   tggatctttgatctctctctctctcggtttcagaatgtgtaatccggatgttgaatctgaaccaacctttgaatccaagtggaactgcgaacgaagaagt  7831700  Previous    Next  AGI:  At2g17975.1    Description:  zinc finger (Ran-binding) family protein. similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT5G25490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48226.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 7829156    to: 7831087    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g17980.1    Description:  ATSLY1; protein transporter. Identical to SEC1 family transport protein SLY1 (SLY1) [Arabidopsis Thaliana] (GB:Q9SL48); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47451.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83258.1); similar to unknown [Picea sitchensis] (GB:ABK25676.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) Range:  from: 7831248    to: 7833679    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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