Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    ------>ZmHOX2a(1)                                                 --------->TOE2(3)                    <---------ICU4      <---------ICU4                           --------->ANAC46                    --------->YAB1     --------->ICU4                 --------->ANAC58                 --------->YAB1        <---------YAB1 <---------ALFIN1--------->ANAC58   --------->ATHB12       --------->GLK1(2)    <---------YAB1   <---------ANAC58   --------->KAN4(1)--------->ANAC58      <---------GLK1(2)   <----------DOF2    <---------ANAC58  <---------KAN4(2) --------->ANAC58   gggcattagaatctatgactcatcatcactttgatagagtcatttttgcttcctcaacacatgagattattcaagccttacacaaaccacatgaatggcc  7789400                                                           --------------->AGL15                                                           <---------------AGL15                                                 <---------ALFIN1           <---------ARR11(3)                   <---------ZAT14       <---------ANAC58                        --------->AtMYB61       <---------ANAC58                        <<<<<<<<<<<<<<<<<LFY       ----------->GT1                      --------->ANAC58             ============================       <---------ANAC46              ---------->DOF2      <-----------------AGL1           <-------TEIL      <---------MYB46(3)    <---------TOE1(3) --------->MYB46(3)         <----------DOF2  --------->ALFIN1  ------>ZmHOX2a(1)    <----------DOF2      --------->ANAC58   <---------AtLEC2<---------REM1(1)   tctcctattgggtgatatttctgagcttttaagcttcactaaagacaaaccacactggtttctctgtatggaacccttttgttgtaacagaggtgcgaat  7789500                                         --------->O2                                         <---------O2                                         --------->TGA1a                                         <---------ANAC58                                         --------->ANAC55(2)                                         <---------TGA1a                                         <---------ANAC55(2)                                      --------->TOE2(2)                 <XXXXXXXXXXXXXXXXXXXXMIR2111A/B              --------->bZIP60(1)    --------->YAB1              <---------bZIP60(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------O2                 <---------ATHB12                                         --------       --------->O2               --------->WOX13(1)                                <---------At4g35610       --------->TGA1a        --------->GLK1(1)                                     --------->At4g35610       <---------TGA1a<------ZmHOX2a(1)  <---------ANAC58    <---------ANAC46    <---------At5g28300 ================bZIP_DOF    <---------ARR14(2)    <xxxxxxxxxxxxxxxxsmallRNA(i) <-----------GT1   gctattgccacgagtgtcatcacaggatgcagatttcaatcatacgtggctagaggttatccatcgtggatgacaaatgtttttactgctgagagaggta  7789600                                  <---------ANAC58                                  <---------ANAC58                   <---------ANAC46                              <----------DOF2       <---------TOE2(3)    <----------DOF2                 <----------DOF2 --------->ATHB12  <---------ANAC58                      <-----------GT1 --->GT1           <---------ANAC58              <---------MYB52(1)                               <--   acttgatttgagattgggatgtcgtgttgtctttcttcgtgtctactctctgtttttttttactttcctttgagtcaagtcttcttacaagttgcgattt  7789700                                                                <-----------GT1                                                        <---------RVE1(1)                                                        <---------CCA1(1)                                                       --------->ARR11(3)               <----------DOF2                         <---------AHL20(1)           <----------DOF2                           <---------YAB1 <----------DOF2      --------->WRKY18(1)      ------>ZmHOX2a(1)                    <---------TOE1(3) <---------YAB1   <---------YAB1      <----------DOF2    --------->YAB1<----------DOF2 <---------ARR11(3)  --------->AHL20(2)   ---------->ID1        --------->TOE2(3) <---------TOE2(3)<---------AHL20(2)<---------AHL20(2) --------DOF2 <------------------------ANAC81        <---------TOE2(3)     <---------AHL20(2) *TSS   cttttgtccttttctttcttttagttatcttaatcttctcgcttcaaggtttattaagatatttttattccttttatttttttattaagaggtcaagttt  7789800                                                                                            <-------GAMYB                                                                                            <------NtERF2                                                                                           <---------MYB46(3)                                                                                          <---------ANAC58                        <---------DAG2                                                    <---------RAP2.6(2)                     <-----------GT1                                                      <---------ANAC46                  <---------ARR11(3)             <-----------GT1     <----------DOF2      <---------ANAC58                  <---------AHL20(1)         <----------DOF2    <-----------GT1          <---------LBD16          <---------ZAT6<----------DOF2<----------DOF2      <----------DOF2          <---------ICU4<-   tttagtcttctagtcttcaatatatactttttagttttgtgctttctcttttatcccaatctcttttctctctttcattttgtctaaacatggcggatga  7789900                                                                                       <------NtERF2                                                                                      --------->LBD16                                                                           <---------MYB46(3)                                                                          <---------YAB1                                             <----------DOF2        <-------TEIL      <------NtERF2                                          ------>ZmHOX2a(1) <---------ATHB12         --------->RAP2.6(2)      --------->ANAC58                <---------ARR14(2)<---------------AGL15       <---------LBD16      --------->ANAC58         <-----------RAV1(2)      --------------->AGL15   <---------ANAC58   <----------ID1--------->GLK1(2)    <---------PCF2   ----------------->AG--------->ATHB12 ---------DOF2  <---------GLK1(2) <------ZmHOX2a(1)    ----------------->AGL3   <---------ANAC58   --   gctttgggacgaaatacagaatttggagttgagacaggagggtccttctttgttcatcccaaatgaagcatacatcatggttgcaggccggaacagactt  7790000                                                        <----------DOF2                                                      <---------ZAT14                                                  <-----------GT1                                                 <---------YAB1                  <---------At4g35610          <---------ALFIN1                     --------->YAB1                    --------->At4g35610       <---------ANAC58                        <--------HAHB4                --------->MYB52(1)       <---------ANAC58                        <---------ICU4              <----------DOF2  --------->ATHB12                            --------->ICU4              <---------ANAC58          <  <---------ICU4                              <---------YAB1              <---------ANAC58        <-- <---------YAB1                        <-----------RAV1(2)         ----------->RAV1(2)    <---------AtLEC2 ------->YAB1                       --------->TOE1(3) --------->ZAT14--------->ALFIN1    <-------TEIL   agcatcattgctcgacctctgaatccaagggtccaaaaccttcaggctattattactgctctacctagagcctggggcttaacagctcatgttcatggca  7790100                                       <---------ARR14(2)                                       --------->ARR14(2)                             <----------DOF2                                         --------->MYB46(3)           <-------TEIL    ------>ZmHOX2a(1)            --------->At4g35610   <----------DOF2 ---------YAB1         --------->ARR14(2)        <---------------------WRI1  <---------ANAC58   ----- ----ZmHOX2a(1)        <---------ARR14(2)    ------->TEIL   ---------->DOF2  <---------ANAC58 -------   ggattatagatgatacatatgtgcaattcctctttcagtcggaaatggacctgctatcagttcaaaggagggaaccctggcttttcaacaattggtttgt  7790200                           <----------DOF2                           --------------------->WRI1          --------->At4g35610                        ------>ZmHOX2a(1)                   <-------TEIL                  --------->ARR14(2)                   <---------At4g35610                <---------LBD16                     <---------ARR14(2)                   <---------ZAT2                   ------>ZmHOX2a(2)                     ------->TEIL                  <---------ATERF1(1)              <---------GLK1(1)                     <---------CCA1(2)                --------->ATERF1(1)               <---------ARR11(3)                   --------->ANAC55(2)                ----------->RAV1(2)          --------->ATHB12<-----------RAV1(2)    <---------MYB52(1) --------->At4g35610    ===================================HOX2a_HOX2a             <----------DOF2 ----->ID1     <---------ATERF1(1)          --------->MYB46(3) <---------At4g35610 <---------DAG2 -->MYB52(2)   <------NtERF2      <----------DOF2 --------->ARR11(3)              --------->TOE2(3)   cgcatctcaacgttggcagcctgctcctgctttgaactttgtgacaaccattgatctctgggttcagatgagaggtattcccttcctttatgtatctgaa  7790300  Previous    Next  AGI:  At2g17910.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.8e-42 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 7785577    to: 7789611    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g17920.1    Description:  nucleic acid binding / zinc ion binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41590.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 7789794    to: 7791369    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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