Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <------MYB46(1)                                                           <----------DOF2   <------MYB83                           --------->AtLEC2                --------->TOE2(3)--------->MYB59                        <-------TEIL         ------>ZmHOX2a(1)          --------->ATHB12   acacaaactcttgaacatgttcaaaattcatacaaaatgtgttcttccttacaaaacctttctttaatctctattgatttggtctgtagaacaatgttct  7681000                                       <----------DOF2                              <----------DOF2                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                           <---------ARR14(3)                           --------->ARR11(3)                           <---------AGP1                           --------->ARR14(2)                           --------->ARR14(3)                 <---------GLK1(2)        --------->ATHB12   <---------ARR14(2)               --------->ICU4      <----------DOF2      <-----------ARR10            --------->LBD16    <---------ANAC46       <---------ARR11(3)          <---------ANAC46                     <--------    ----------->GT1      ----------->ARR10            <---------LBD16          <----------DOF2      -   tgtatggggtttattgagaaaacacagaagatctttcggttctttagagaacattttgcggaaagattgttgtttttagggctttgcccacaaacttgta  7681100            <---------ARR14(2)         --------->AHL20(2)       ----------->GT1     ---------->DOF2  --------->ANAC58  --------->ANAC58                                                       --------->YAB1 -------AtSPL8           ------>NtERF2                                 --------->AtLEC2 --------->DOF2    --------->REM1(2)                       <----------DOF2 ---------->DOF2      -----   cagaaagcaaagaaaatactgtgttgaggccttgagggagagaggctatcgcacaaactgactttgggctaccattcaaaagcccaataggcccaatgta  7681200                                                <---------SPL7                                                --------->ORA47(1)                                                <---------RAP2.6(3)                                                ------>NtERF2                               --------->At4g35610  ------>ZmHOX2a(1)                              ----------->RAV1(1)   --------->At4g35610                       --------->ANAC55(2)     --------->RAP2.3(3)                       <---------ANAC55(2)     --------->DEAR3(1)                      <---------TOE2(3)        --------->RRTF1(3)                      <---------TOE1(3)        --------->RAP2.3(2)                     --------->MYB52(1)       --------->ATERF1(1)                     <---------DOF5.7(2)      --------->DEAR4(2)              --------->ARR14(2) ------->GAMYB<------NtERF2                       <-------TEIL              <---------ARR14(2)--------->MYB46(3)  <---------At4g35610  ------->GAMYB             ------>ZmHOX2a(1)--------->MYB52(1)<-----------HVH21       --------->MYB46(3)     <-----          ---------->ID1   --------->ANAC58   --------->RAP2.3(1)     ----------->RAV1(1)    <-------          <-----------GT1  --------->ANAC46   --------->ORA47(2)      --------->MYB52(1)     -------- <-----------GT1   --------->DOF5.7(2)       <---------RAP2.3(1)     --------->ANAC46       --------- -->TEIL <-----------GT1   --------->ANAC58 --------->ANAC46       --------->ANAC46 ------->TEIL  <--   tttctacggtttttcctattcgctaacgtaagcaacagactaccatgcgccgtcctctgtccattttcaacacaacagacaaaatgcatcttcacccaca  7681300                                                                  --------->ANAC46                                                                  --------->ANAC58       <---------ARR14(2)                                     <---------ANAC55(2)      <---------RAP2.6(3)                                     --------->ANAC55(2)         <---------MYB111(1) ----ALFIN1                                  --------->ARR14(2)   --------->ANAC58   <---------ZAT6 --ALFIN1                          <---------ANAC58          <---------TOE2(3)--------->ZAT14     --- --->RAV1(1)    --------->ANAC58   <---------ANAC58          <---------TOE1(3)--------->ZAT18     --- >MYB46(3)  <-----------GT1      <---------ARR11(3)         <---------DOF5.7(2)      ----------->GT1 --------DOF2   --------->ANAC58 --------->ARR11(3)         --------->MYB52(1)<---------ZAT14     ---   ctttgggccgatattaacaagcccaataggcccaatgtcttgccacggtttctctcatttgctaacgtaagcaactagagtacacgagtgtaactactat  7681400      --------->At4g35610      <---------At4g35610      ------>ZmHOX2a(1)  ------>NtERF2  <---------RAP2.6(3)  <-----------HVH21  <---------SPL7                 *TSS                   ---------->DOF2  --------->ORA47(1)       ------->GAMYB             --------->TOE2(3)         --------->WOX13(1) --------->DEAR3(1)     --------->MYB52(1)           --------->TOE1(3)       <------ZmHOX2a(2) ------>ANAC58          ----------->RAV1(1)     --------->ANAC58         <---------------------WRI1 ------>ANAC46         --------->ANAC46         --------->ANAC58   --------->TOE2(3) ------>ANAC58       --------->ANAC46   XXXXXXXXXXXXXXXXXXXXX>MIR771<----------DOF2 ---------->DOF2   acgccgtcctctgtccattttcaacacaacagagtcacaaaaacctctgcaagaaccctaaagctaaaacctttttgcgatcaatcgaaagaaaacaaaa  7681500                                                                                      <---------ARR11(3)                                                                                      --------->ARR11(3)                                                                                 ------>NtERF2                                                                                 <------NtERF2                                                                                 --------->LBD16                                                                                --------->DEAR3(1)                                                                               <------NtERF2                                                                               --------->RAP2.3(1)                                                                              --------->ABI4(1)                                                                              <---------ATERF1(1)                                                                              ------>NtERF2                                                                              <---------RAP2.3(1)                                                                             --------->RAP2.3(2)                                                                             --------->RAP2.3(3)                                                                             --------->ATERF1(2)                                                                             --------->RRTF1(2)                                                                             --------->RRTF1(3)                                                                             <---------ATERF1(2)                                                                             <---------ALFIN1                                                                             <---------DEAR3(1)                                  --------->ATERF1(1)                        --------->DEAR3(1)                      <---------ANAC58                                      --------->RRTF1(1)                      <---------ANAC46                                      --------->ATERF1(1)                      <---------ANAC58                                      --------->RAP2.6(1)                  <---------DEAR3(2)                                        <------NtERF2                <---------------------WRI1                                  --------->DEAR4(2)                <------NtERF2     <------NtERF2                             --------->ORA47(2)              <---------DEAR3(1) --------->LBD16                            --------->ERF1           <---------ANAC58      ------>NtERF2                              --------->RAP2.3(1)    <-           <---------ANAC46     --------->ATERF1(2)                        <---------RAP2.3(1)     <-           <---------ANAC58     <---------ATERF1(2)                        <---------ATERF1(1)   ----      <---------HSFB2a(1)       <---------RAP2.6(2)                        ------>NtERF2         ====      <---------HSFC1(2)        <---------DEAR3(1)                        --------->DEAR3(1)  -------      --------->HSFC1(2)        <---------ANAC46                        <---------ATERF1(1)--------->ANAC46      --------->HSFB2a(1)      <---------LBD16<-----------HVH21      ------>ZmHOX2a(1)<---------GLK1(2)    ---------->DOF2<---------MYB52(1)    --------->ATHB12     --------->AtMYB61--------->ATERF1(1) --   aatggggaaagttccgtcgtcgtttcgtagtatgccggcgaacttattggtcagaaaaacaacaccatctcctccagcgccgccgcgagattttcgcaac  7681600       --------->ALFIN1      <-----------HVH21      --------->LBD16     <---------TGA1a     --------->TGA1a     <---------O2     --------->DEAR3(1)     <---------ANAC46     --------->O2  --------->DEAR3(1)  ------->GAMYB  =============MYC_MYB                      --------->ANAC58 --------->MYB46(3)                         --------->ANAC46 --------->DEAR3(2)                         --------->ANAC58                           ------>MYB83 --------ARR14(2)                    --------->ZAT14                           --------->ANAC58 --------GLK1(2)  <-------TEIL       <---------ARR14(2)                        --------->ANAC46 --->GAMYB      <---------ARR14(2)   --------->ARR14(2)                        --------->ANAC58   --- ==============MYC_MYB          --------->LBD16      <---------ANAC58      --------->AtLEC2       --- ---->RAV1(1)<------ZmHOX2a(1)  <---------LBD16      <---------ANAC58--------->GLK1(1) <---------CCA1(2) ------->ARR14(2)--------->GLK1(2)--------->LBD16<---------ALFIN1   <------ZmHOX2a(1)  ------>MYB46(1)   agaaccgccgtgggaggagattcagccaaacttccccagaatactcaagcccctcgcgagccctccttgaggaatccattcaagtcaccaaatctctcag  7681700                                      --------->ARR14(2)                                      ------->TEIL                                   --------->ANAC58                                   --------->ANAC46                                --------->ZAT14                              --------->O2                              --------->bZIP60(2)                              --------->TGA1a                            <---------ALFIN1                           <------NtERF2                          <---------ATERF1(1)                          ------>NtERF2                          --------->ABI4(1)                         --------->RRTF1(3)                         --------->DREB2C(2)                         --------->RRTF1(2)                         --------->ATERF1(2)                         --------->RAP2.3(2)                         --------->ANAC46                         <---------ATERF1(2)                                                        <                         --------->DEAR3(1)                                                         <                         --------->RAP2.3(3)                                                        <                         --------->RAP2.6(2)                                                       --                        --------->ORA47(2)                                                       <---                        --------->ERF1<---------ARR14(2)                                        <----                        --------->RAP2.3(1)                                                ------->GAMYB                       <---------ATERF1(1)                                                --------->MYB46(3)   ---------->DOF2    ==================MYC_MYB            <---------HSFB2a(2)     ----------->GT1<--   =====================================bZIP_DOF  ------>ZmHOX2a(2)          <---------ATHB12  <----- ------>ANAC58        ------->GAMYB--------->ANAC58     --------->ARR14(2) --------->WOX13(1)  ------ ------>ANAC58       --------->MYB46(3)   <---------ALFIN1 --------->HSFB2a(2)--------->YAB1  -------   acgctaaaagcctcttcaattcaatcgccgccacttcacgaatcccactcgatctcaagttccacaactctgttcttcaatcatacggttcaatcgccgt  7681800      --------->CCA1(2)     <---------ARR14(2)     --------->ARR14(2)     --------->ARR11(1)   --------->ANAC46 <---------DOF5.7(2) ---------WRKY38(1)                                                --------------->AtSPL8      ------ ---------WRKY45                                                 <---------WRKY12           <-------- ---------WRKY12                                                 <---------WRKY38(1)<-----------HVH21 ------->DOF5.7(2)                                        <------NtERF2            <----------DOF2 ------ETT(2)                                             ----------->HVH21       <---------ANAC58  < --NtERF2 --------->At5g28300                            <------NtERF2     <---------CCA1(2)<-------- ---------HVH21                           ------>NtERF2  --------->LBD16 <---------ANAC58------->MYC3 ----ATERF1(1)              <---------ARR14(2)         <---------LBD16   <---------ANAC58<-------MYC3 >NtERF2 ----------->GT1<---------At4g35610 <---------MYB59     <-------TEIL      <---------ANAC58  < -->DEAR3(1)       <----------DOF2       --------->DEAR3(1) --------->SPL7------>ZmHOX2a(1) <--------   cgtcaacgatacggtgaaactctttcagcatattttgaaatcgcagcctaatttcaggccgggacgttcaacgttccttatcttgctttcacatgcttgt  7681900  Previous    Next  AGI:  At2g17670.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to MEE40 (maternal effect embryo arrest 40) [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69960.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7681433    to: 7683239    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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