Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <------ZmHOX2a(1)                                   --------->ANAC58                                 <-----------RAV1(2)                                <------NtERF2                               ----------->RAV1(1)                               ------>NtERF2                              ----------->HVH21                              --------->ETT(2)                              --------->DEAR3(1)                             --------->RRTF1(1)                             --------->ATERF1(1)                             <------NtERF2                             --------->RAP2.3(1)                            <---------ATERF1(1)                            <---------RAP2.3(1)                            ------>NtERF2                            <---------DEAR4(2)    <---------ZAT2          <---------ERF1    <---------At4g35610     <---------ORA47(2)    --------->ZAT2         <---------DEAR3(1)                                   <------MYB46(1)    --------->At4g35610    <---------RAP2.6(2)                                  <------MYB83 ------->ANAC46            <---------RAP2.3(2)                                  ----------->GT1 ------->ANAC58            <---------RAP2.3(3)                         --------->ANAC46 ------->ANAC58           --------->ATERF1(1)                          --------->ANAC58 ------->ANAC55(2)        <---------ABI4(1)                    <-------TEIL <---------ARR14(2) ------->ANAC55(1)       <---------ATERF1(1)               <---------------AtSPL8 -------LBD16       =======================RAV             <---------------AtSPL3 --HSFB2a(1)        <-----------RAV1(2)         <------ZmHOX2a(1)      --------->ANAC58 ->KAN4(1)         <---------At4g35610     --------->MYB52(1)  ---------->DOF2 --------->MYB59 -KAN4(2)         <-----------HVH21--------->ANAC58       <------ZmHOX2a(1) --------->ARR14(2)   cacggaagctggtgagtctgcatcagagggcggcgacaggaaacttaacaggagtatataggaagtacagcacaagcaaatttggttacatagcaaaatg  7673300                                                                               <<<<<<<GRF7          <----------DOF2                                                    ----------->HVH21      <---------ZAT18              --------->TOE2(3)                         ------>ZmHOX2a(1)     <---------ALFIN1              --------->YAB1                      --------->At4g35610    --------->At4g35610          <---------YAB1                 <---------------AtSPL8    --------->ZAT14            <---------ICU4                   --------------->AtSPL8 <---------At4g35610          <---------YAB1---------->DOF2     <---------------AtSPL3<---------ZAT18 --------->At4g35610          <---------ATHB12  <------ZmHOX2a(1)      <---------At4g35610   tgaagctgcacactttctagtgtctgagtctcatcattcttaatccaaaaggacagtagtaagtagtttgtacagcttcctgacatagttccctcattca  7673400                                       --------->AHL20(1)                                       --------->AHL20(2)                                       <---------AHL20(1)                                       <---------AHL20(2)                                      <---------AHL20(2)                                      --------->AHL20(2)       <---------MYB52(1)         --------->ZAT14                                   --------->WOX13(1)    <---------GLK1(2)              --------->ANAC46                               --------->ANAC58       <---------WOX13(1)             <---------ZAT18                               --------->ANAC58     --------->ATHB12            <----------DOF2     -                             ---------->DOF2       <---------YAB1          <-----------GT1<---------ZAT14   ctctgtagcacaaataagaagaaacaaaaaaaaaagccaattaaatttgtcttatgattgattctgtttttttgttgttactctttgttcacttcacttg  7673500                                    <--------HAHB4                                    --------->ATHB12                                    <---------ICU4                            --------->ATHB12                            -------->HAHB4                           --------->ICU4                           <---------ATHB12                           <---------YAB1                   <---------WOX13(1)                                              --------->At4g35610                <---------YAB1<---------WOX13(1)                        ------->TEIL        --------->ZAT6 <---------YAB1                                  <---------CCA1(2)      <-----------GT1--------->YAB1 --------->YAB1                  --------------->AtSPL8        --- -------->ICU4  <---------ATHB12   <---------ATHB12              ------->TEIL      <---------At4g35610   tcagtattaaactctacaatgaatgataaatgattgaatcatttcattctttgttcagaatgaaatgtattttgtatcttatttgagctaaatacaaaaa  7673600                                                    -------->P                                                    ------>MYB46(1)                                                  --------->MYB46(3)                                                  <---------MYB111(2)                                                  <---------MYB55(2)                                                  <---------MYB111(1)                                                  --------->AtMYB61                                                  <---------ALFIN1                                              --------->MYB46(3)                                       ------>ZmHOX2a(2)                                       =========================HOX2a_HOX2a                                      <<<<<<<<<GATA-4                                      <<<<<<<<<GATA-2                                      <<<<<<<<<GATA-3                                      <<<<<<<<<GATA-1                                 <---------DAG2                                      ==========================HOX2a_HOX2a       <---------ARR14(2)                                      <---------GLK1(1)                  --------->ZAT14                                      <------ZmHOX2a(2)             <---------ZAT14   <----------DOF2                                     <---------AGP1 ------>MYB83    --------->ZAT14<---------RVE1(1)           ---------->ID1            --------->ARR11(3)           --------->ANAC46<---------GLK1(2)--           <---------MYB52(1)        <---------ARR11(3)         <---------ALFIN1  --------->ARR14(2)-          <-------GAMYB         <----------DOF2  --------->MYB46(3)*TSS--------->ANAC46         <---- ------>MYB52(1)     <----------DOF2<---------CCA1(2)    ------>ZmHOX2a(1)       <---------At4g35610=   caacgtcgttttcgttgttttcactttgacttctctttagatctctctcccaccaactccttcttcacacttcactaaacttcagatactttttgttttt  7673700                             ------->GAMYB                          <---------DOF5.7(2)                         <---------WRKY38(1)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <---------ANAC46                      <---------bZIP60(1)                     --------->RRTF1(1)                     --------->RAP2.3(1)                     --------->ATERF1(1)                     <------NtERF2                    ------>NtERF2                    <---------ORA47(2)                    <---------RAP2.3(1)                    <---------ERF1                    <---------RAP2.6(1)                    <---------ATERF1(1)                    <---------RRTF1(1)                   <---------RAP2.3(3)                   <---------ANAC46                   <---------RRTF1(2)                   <---------RRTF1(3)                   <---------RAP2.6(2)                   <---------DREB2C(2)              <---------ICU4<---------MYB52(2)           --------->YAB1<---------WRKY12      <------ZmHOX2a(2) --------->DOF5.7(2)          ------>MYB46(1)                            -----     --------->ARR11(3)<-----------HVH21             ------>MYB83                               <----     <---------ARR11(3)------>NtERF2               <---------MYB59                             ------ ------->TOE2(3)   <---------RAP2.3(2)     --------->At4g35610                               <------- ----->ZmHOX2a(1)  <---------DEAR3(1)   ------>ZmHOX2a(1)   --------->ARR14(2)              --------- -------GT1--------->TOE2(3)--------->MYB46(3)     --------->AtMYB61<----------DOF2   <---------ARR11(3) ============HOX2a_HOX2a<------NtERF2 ----------------->AGL1<---------ARR14(2)   <---------ATHB12   tcctcaagatcaacgataatggcggcgtcaacgaactcattcctcatcggaaaccaaacccaaatcccttctttgaaacccaaatcaatatcccaatcct  7673800                                                                                         <------ZmHOX2a(2)                                                                                        --------->ARR14(2)                   <---------ALFIN1           <---------ARR14(2)                   <-----------HVH21                 ------>MYB83                ------>MYB46(1)                      --------->DEAR3(1)      --------->ZAT14               ------>MYB83                               --------->AtMYB61      <---------ZAT14             <---------ALFIN1                             ------->GAMYB  <------    --------->bZIP60(2)      --------->AtMYB61--------->ARR14(2)               <---------ALFIN1    --------->ANAC46       -------->P --------->ANAC46                        --------->MYB46(3) ->ZmHOX2a(1)    ----------->RAV1(1)------>MYB46(1)                    --------->At4g35610    ------- ------DOF2      ------>MYB46(1)  --------->DEAR3(1)                   <---------At4g35610------>ZmHOX2a(2) --->TOE2(3)    --------->ANAC46  --------->AtMYB61                <---------ARR14(2)   <---------ARR14(2) --ATHB12--------->ANAC46  ------->TEIL      ------>MYB83          --------->ARR14(2) <---------DEAR3(2) >ARR14(2)    --------->ANAC46   --------->MYB46(3)    --------->WOX13(1)     <---------MYB55(2)   ttatccacttcactaaacccaacaccatcaacctcaccacccgaaccaaatccgtttcaatccgatgcgcttccgcttcaaccaccgtcggatccgagca  7673900                                                                  --------->GLK1(1)                                                                  <------ZmHOX2a(2)                            --------->LBD16                      --------->ARR11(3)                           --------->RAP2.6(2)                   --------->AGP1   ----------->ARR10                           --------->RAP2.3(2)                   --------->ARR14(2)                         --------->At4g35610                     <---------AGP1  <------NtERF2                         <---------At4g35610                     <---------ARR11(3)                       <-----------RAV1(2)                       <---------ARR14(2) --------->ARR14(2)                      <-------TEIL                              --------->At4g35610<---------CCA1(2)                    <---------ARR14(2)            =======================HOX2a_HOX2a<---------ARR14(2)                    --------->ARR14(2)            ========================HOX2a_HOX2a       <--------                 <------NtERF2                 ------>ZmHOX2a(1)<---------CCA1(2)--------->ALFIN1                 <-----------RAV1(2)           ===========================HOX2a_HOX2a ------>ZmHOX2a(2)                ------>NtERF2       --------->LBD16           --------->YAB1   <---------ANAC58                <------NtERF2      <---------HSFB2a(2)       <---------ATHB12  <---------ANAC58                --------->LBD16    --------->HSFB2a(2)     --------->WOX13(1)  <---------ANAC46 <----               --------->DEAR3(1) <---------LBD16 ------>ZmHOX2a(1)            <---------bZIP60(2) ---ZAT2      <---------LBD16 <----------DOF2  ==========================HOX2a_HOX2a--------->ARR11(3) -->ZAT2      --------->RAP2.3(1)--------->MYB52(1) ---------->DOF2------>ZmHOX2a(2)<---------AGP1   gcgagtcatcaatttcgccgcaggtccagccgcattaccggaaaacgtcctcctcaaagctcaatcagatctctataactggcgtggatctggtatgagt  7674000                                                                     <---------GLK1(2)                                                                    --------->At4g35610        <-----                                                                    <---------ZAT2         --------->KAN4(2)                                                                <-----------HVH21         <---------HSFB2a(1)                                                                <-----------TGA1          <---------KAN4(1)                                                           --------->GLK1(1)              --------->KAN4(1)                                                --------->At4g35610 <---------At4g35610   <----------TaMYB80                                              --------->DAG2   --------->ANAC46           --------->HSFB2a(1)                                             ---------->DOF2------>ZmHOX2a(2)             <---------HSFC1(2)                                       --------->WOX13(1)  <---------GLK1(1)              --------->HSFC1(2)                     ---------->DOF2  <---------ICU4      --------->ARR11(3)             <---------KAN4(2)                   --------->At5g28300--------->YAB1 --------->ARR14(2)        --------->GLK1(2) <---     <---------At4g35610              -------->ATHB1 --------->GLK1(2)   <---------HSFB2a(2)   <----- -YAB1          <---------LBD16      <---------ATHB12------->TEIL<---------MYB52(1)      ---------->TaMYB80 -----ZAT6  <---------WRKY38(1)    --------->WOX13(1)<---------ARR14(2)  --------->HSFB2a(2)   <-----   gttatggagatgagtcatcgcggtaaagagtttctctcaatcattcaaaaagctgaatctgatctccgtcagcttctcgagattccatcggaatattccg  7674100                                                                                                <----                                                                                             ========                                                                                             ------>ZmHOX2a(2)                                                                                           <---------ARR11(3)                                                                        <---------MYB52(1) <---------AGP1                  <------NtERF2                                        <-------GAMYB       --------->ARR14(2) ----ANAC46   <---------MYB46(3)                                      <---------ANAC46     <---------ARR14(2) ------MYB52(1)  ------>NtERF2         <-----------GT1           <---------ICU4            --------->ARR11(3) ----ANAC58  <---------DEAR3(1)      <---------DAG2             <---------YAB1            <---------CCA1(2) ----ANAC58  --------->ALFIN1        <----------DOF2      <---------ARR14(2)         <-----------GT1   ttttgttcttacaaggtggtgccactactcaattcgctgctttacctctcaatctctgtaaatctgatgattccgttgattacattgttactggatcttg  7674200  Previous    Next  AGI:  At2g17620.1    Description:  CYCB2;1 (CYCLIN B2;1); cyclin-dependent protein kinase regulator. Identical to Cyclin-B2-1 (CYCB2-1) [Arabidopsis Thaliana] (GB:Q39068;GB:Q9SHP1); similar to CYCB2,2 (CYCLIN B2,2), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT4G35620.1); similar to G2/mitotic-specific cyclin-1 (B-like cyclin) (CycMs1) (GB:P46277); similar to B-like cyclin [Medicago sativa subsp. x varia] (GB:CAA55272.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin, A/B/D/E (InterPro:IPR014400); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro: Range:  from: 7671185    to: 7673604    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g17630.1    Description:  phosphoserine aminotransferase, putative. similar to PSAT (phosphoserine aminotransferase), phosphoserine transaminase [Arabidopsis thaliana] (TAIR:AT4G35630.1); similar to Phosphoserine aminotransferase, chloroplast precursor (Phosphohydroxythreonine aminotransferase) (PSAT) (GB:P52877); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Phosphoserine aminotransferase; (InterPro:IPR003248); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region, subdomain 2; (InterPro:IPR015422); contains InterPro domain Pyridoxal phosphate-dependent transf Range:  from: 7673667    to: 7675147    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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