Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->CCA1(2)                                           <------ZmHOX2a(2)                                          <---------ARR14(2)           <------MYB83                   --------->ARR14(2)           ----------->GT1        ------>ZmHOX2a(1)    --------->ARR14(1)        --------->ARR14(2)      <---------ATHB12   --------->ARR14(2)         <---------ARR14(2)    --------->WOX13(1)   <---------GLK1(2)    <---------LBD16   --------->ARR11(3)   <---------ARR14(2)<----------DOF2      <---------ARR11(3)  <------ZmHOX2a(1)<---------------AGL15  --------->AGP1 <---------YAB1 <-----------GT1   ================HOX2a_HOX2a       --------->ATHB12 ----YAB1  <------MYB46(1)   --------->GLK1(1)     --------->MYB46(3)        ----------->GT1 --->GT1<---------MYB52(1)   <---------GLK1(1)  --------->MYB46(3) <---------YAB1   attaggattcgctaggttaaactcttttcggaaatcctcactaagatccaacaacaatcagtttaaaatttgattagaatcgaaaaatcaattcgaaaat  7650300                 <---------ANAC58                 ----------->GT1                 <---------ANAC58                 <---------ANAC46                                         --------->HSFC1(2)                <-------TEIL                                              ------>ZmHOX2a(2)               --------->CCA1(2)                                          <---------HSFC1(2)              <---------GLK1(2)                                           <---------HSFB2a(1)              <---------ARR14(2)                                          --------->HSFB2a(1)              --------->ARR14(2)                                         <------ZmHOX2a(2)              --------->ARR11(1)                                        <---------ARR14(2)             --------->HSFB2a(1)                                        --------->ARR14(2)             --------->HSFC1(2)                                  --------->ATHB12             <---------HSFB2a(1)                                <-------TEIL             <---------HSFC1(2)           --------->ANAC58  <---------TOE2(3)            ----------->ARR10             --------->ANAC58  <---------TOE2(2)          <------ZmHOX2a(1)             ---------->DOF2     <---------TOE1(2)      ---------->ID1   --------->GLK1(2)          <------ZmHOX2a(1)           <---------MYB52(1)------>ZmHOX2a(1)   ttgaaaatcggaggaagattcgtgaaattacaggaagacgaagaaagcacttggaggtctcttaggttgatttggatccttcttcgtcttcttcccagcc  7650400                                                                           ------>ZmHOX2a(2)                                                                          <---------GLK1(1)                                                                         <---------ARR11(3)                                                                         <---------AGP1                                                                         --------->ARR14(2)                                              <---------GLK1(2)          <---------ARR14(2)      ----                                  <----------ID1                        <---------CCA1(2)        ----                           ----------->GT1    --------->ARR11(3)   --------->GLK1(2)           ------                       <---------AHL20(2)     <---------ARR14(2)   <---------ARR14(2)          <-----                      <---------ATHB12  <---------GLK1(1)          --------->ARR14(2)<------NtERF2   tttctacctctggttttgagtctaataaatcgaaaaacgaagaaatcagattttgaagatgcgaaaacaaatctggatctcagagtcggagaagaaacca  7650500                                        <---------DAG2                                       <------NtERF2                                      ------>NtERF2                                     --------->RAP2.6(2)                                     --------->RAP2.3(3)                                     --------->RAP2.3(2)                                     --------->DEAR3(1)                                    --------->ATERF1(1)                                    --------->ERF1                                    --------->DEAR4(2)                                    --------->RAP2.3(1)                                    --------->ORA47(2)                               <---------GLK1(2)                               <---------ARR14(2)                          <----------DOF2<----------DOF2                                           <-                        --------->At4g35610          --------->HSFC1(2)                            --       <---------ICU4   <---------At4g35610          <---------HSFC1(2)                            -- -->MYB46(1)       <---------ANAC58<---------ATERF1(1)                                       >>>>>>>> -->MYB83          <---------ANAC58<---------RAP2.3(1)                                 >>>>>>>>>TBF1< --->AtMYB61   <-------GAMYB   --------->ARR14(2)    --------->HSFB2a(1)        --------->MYB52(1) <- ----MYB59 <---------ZAT18--------------------->WRI1 <---------HSFB2a(1)   ---------->DOF2>>>>>>>>>TBF1   aacctctgatcagtgctcgttgcttcagctttggattcgccgcctttcatgtcgaagtttctgcaattgaagaatgacaaagaaacgaagaagaagaaga  7650600  <-------GAMYB  --------->TOE2(3) ------>ZmHOX2a(2) --------ARR11(3)                              <------ZmHOX2a(1) ------->ARR14(2)                             <------MYB46(1) ------->ARR11(3)                             <------MYB83       <---------TOE2(3)                <-- >TBF1                                      <--------P         <---------MYB52(1)             <------ ------ZmHOX2a(2)                      --------->MYB52(1)     <----------DOF2                 <------ --------ARR14(2)                <---------LBD16          <-----------GT1          ----------->HVH21   agatcgttagagaattgtttgactcggactgagtttggggaaaacggtaggagcgagtttttacctttaggttttttttttttgtttgacgagagagcgt  7650700                                                               --------->ARR11(3)                                                          --------->AHL20(2)                                                       --------->AHL20(1)                                                       <---------AHL20(2)                                                       <---------AHL20(1)                                                    --------->YAB1                                                   --------->ICU4                                                   <---------YAB1                                                 *TSS  --------->AHL20(2)                                                 --------->YAB1<---------ARR11(3)                                                <---------YAB1--------->CCA1(1)                                               --------->AHL20(2)                            <---------DEAR3(1) <---------AHL20(2)                     <---------ANAC46                        <---------LBD16        --------->AHL20(1)                   ------>NtERF2 -------YAB1    <---------AHL20(2)            --------->YAB1--------->YAB1    ---------->DOF2 ---ANAC58    <---------RVE1(1)              <---------YAB1 --------->AHL20(2)--------->MYB52(1) ---- ---ANAC58  <------ZmHOX2a(1)   <----------DOF2<---------AHL20(1)        --------->AHL20(2)      <---   atgagtgagtaataggattttttttttgggggggctttagatgcgatattataataataaaataatatctatttttaaaataaaggcgacttgaaatttt  7650800                                          <<<<<<<<<<AREB1                                          <---------ANAC55(2)                                          ===================bZIP_DOF                                          <---------TGA1a                                          --------->ANAC55(2)                                          --------->ANAC58                                          <---------O2                  --------->MYB52(1)                                          --------->ANAC55(1)          <---------ATHB51                                          <<<<<<<<<<AREB2              --------->ICU4                                          --------->ANAC58         ----------->GT1                 <---------ANAC58         --------->O2            --------->ANAC58        <------NtERF2                   <-----------------AGL1    --------->ANAC58       --------->LBD16               ----------->HVH21          --------->MYB52(1)      <---------ANAC58           --------->AHL20(1)            <---------SPL7      <---------ANAC46          --------->AHL20(2)             ------->GAMYB      <---------ANAC58          <---------AHL20(2)             ----------->HVH21     <---------LBD16            <---------ATHB51              <---------MYB52(2)   --------->ALFIN1             --------->ICU4    ---------->DOF2--------->SPL7                ------  <-----------HVH21        ----------->GT1--------->TGA1a     --------->MYB46(3)               ------ <-----------RAV1(1)    <------ZmHOX2a(1) =============================MYC_MYB             --------->ARR14(2) ----->ZAT18     <---------ANAC58<---------AHL20(2)          --------->At4g35610           <---------ARR14(2) ------ZAT14     <---------ANAC46--------->AHL20(2)         --------->MYB52(1)    <---------ZAT18   gcactgtggcgggattttttcgtgaaggagcgaaataatttgacacgtatgggaaagaagagcaacggacggaataatggattgtgctcttcaaatcctg  7650900                       <---------At4g35610                       <---------ZAT2                       --------->ZAT2                       --------->At4g35610                  ----------->RAV1(2)                 ------->TEIL             <-------MYC3             <-------MYC2        ------>ZmHOX2a(2)             ------->MYC3       <------ZmHOX2a(2)             ------->MYC2      <-----------ARR10             <-------MYC4      --------->ARR14(2)             ------->MYC4      <---------ARR14(3)            <--------ABF1      <---------ARR11(3)            <---------ANAC55(2)<---------AGP1<-----------GT1            --------->ANAC55(2)--------->ARR11(3)            --------->O2       <---------ARR14(2)      --------->DAG2             <----------DOF2            <---------O2<---------ANAC58  <---------ICU4  --------->ARR11(3)     <---------ANAC58            --------->TGA1a    --------->ARR14(3)     ---------->DOF2    --------->ANAC58       ----------->HVH21<---------ANAC58<---------MYB52(1)<---------ARR11(3)     <---------ANAC58 ----->HVH21<---------TGA1a   <---------At4g35610  --------->YAB1        --------->ANAC58 >ZmHOX2a(1)<---------ANAC46  <---------CCA1(2)   <-------TEIL        ----------->HVH21   accgtccatttgacacgtgtacctgagcttgcagatctcgcccttaattacattcataaagttcttcaccaattgacgcatttgctttctaataaacccc  7651000                                                            --------->YAB1                                                       ------------>CBF                                                       <------ZmHOX2a(2)            <-----------GT1                                                      <---------ARR11(3)         --------->MYB52(2)                                                      --------->AGP1           <---------MYB52(1)                                                <---------WRKY18(1)       --------->MYB52(1)                                                <-----------GT1          --------->ARR14(2)    <-----                             =================================HOX2a_HOX2a<---------ARR14(2)   <------                          --------->CCA1(2)    --------->WRKY38(1)      <---------MYB52(1)<---------AHL20(2)                     ---------->DOF2      --------->LBD16--------->WOX13(1)   <---------MYB52(1)    -        <---------WRKY18(1)  <------ZmHOX2a(1) ----------->HVH21   <-----------GT1  <---------AHL20(2)   aaatattgtttgaccagaagagagaaagataggaaaactcgaaccgggtttgaccagatcaattagatttaaccggtaccggttatttacattttttttc  7651100                                                                                             <------NtERF2                                                                                             --------                                                                                             <-------                                                                                            ------>NtERF2                                                                                            <--------                                                                                           --------->RRTF1(2)                                                                                           --------->ATERF1(2)                                                                                           --------->RAP2.3(3)                                                                                           --------->RAP2.3(2)                                                                                           <---------ANAC46                                                                                           --------->RRTF1(3)                                                                                           --------->DEAR3(1)                      <----------DOF2                                    ----------->GT1  <------NtERF2        --------->KAN4(2)                                      <---------ZAT18            --------->RRTF1(1)      <---------AHL20(1)                                     --------->At4g35610          --------->ERF1      --------->AHL20(1)                                     <------NtERF2               ------>NtERF2      <---------ARR11(3)                    <----------DOF2  <---------At4g35610    <-----------HVH21      --------->ARR11(3)              <---------At4g35610  <---------WRKY12   --------->GLK1(2)   <-- ------GT1    <---------ALFIN1        --------->At4g35610  <---------WRKY38(1)<-----------ARR10   <-- -----GT1 <-----------GT1          *TSS  ------>NtERF2   <-----------HVH21   <---------GLK1(2)<------ ---------->GT1       --------------------->WRI1  <----------DOF2 <------------------SPL14--------->RAP2.3(1)   ccctgtaaaatattcccctcccctcttttctctcatcgctcgctgcctttctctttcacagtcagcgctcttgaacggagaatctcagtcgcgccgtcaa  7651200  Previous    Next  AGI:  At2g17560.1    Description:  HMGB4 (HIGH MOBILITY GROUP B 4); transcription factor. similar to HMGB5 (HIGH MOBILITY GROUP B 5), transcription factor [Arabidopsis thaliana] (TAIR:AT4G35570.1); similar to HMG1/2-like protein (Protein SB11) (GB:P26585); similar to high mobility group protein [Cucumis sativus] (GB:AAY26151.1); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 7649247    to: 7650749    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g17570.1    Description:  undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein. Identical to Dehydrodolichyl diphosphate synthase 6 [Arabidopsis Thaliana] (GB:Q8S2T1;GB:Q94EZ4;GB:Q9SHL2); similar to undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein [Arabidopsis thaliana] (TAIR:AT5G60510.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61413.1); contains InterPro domain Di-trans-poly-cis-decaprenylcistransferase; (InterPro:IPR001441) Range:  from: 7651135    to: 7653336    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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