Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------GLK1(2)                                                               --------->ARR11(3)      <-----------GT1                                    <---------AHL20(2) ----------->GT1                                --------->ANAC55(2) <---------ANAC46                               <---------ANAC55(2) <---------ZAT6         <------ZmHOX2a(1)       ----------->GT1<---------ARR11(3)                ---- ---->YAB1   --------->AHL20(2)               --------->AHL20(2)                               <----- ----ATHB12  <---------AHL20(2)    ----------->GT1      --------->AHL20(2)                   <-------   gtagtgtgataccatttaaatagtgaggaagaaaggctggaaaaacaattaagtaacaataaatagattttgcgactattgaaataaactggtttgcagg  7630500           <---------WOX13(1)         --------->ATHB12                      <---------WOX13(1)        <---------YAB1                      <---------TOE2(3)   <---------TOE2(3)               --------->At4g35610  <----------DOF2                 ----------->GT1 ------>ZmHOX2a(2)             <---------ARR11(3)      <---------ANAC58  --------->CCA1(2)          - ------->HVH21                 --------->ARR14(2)      <---------ANAC58 --------->ARR11(3)       ---- ----At4g35610                 <---------ARR14(2)--------->ATHB12       <---------ARR11(3)       <--- ----RAV1(2)              <------ZmHOX2a(2) <---------YAB1          ---------->DOF2    --------->CCA1(2)   tgatcgaggtttgattggaattcaatagatcaatatccgatgaaataagattgatttgctttctctctctaaaagatttaagagagaagatagaaaaaat  7630600        --------->AHL20(2)  --------->GLK1(2)              XXXXXXXXXXXXXXXXXXXX>MIR161.2       --------->AHL20(2)<---------TOE2(3)       --------->YAB1 -------->DEAR3(1) --------->ARR11(3)           --------->AHL20(2) ----->YAB1        <---------ARR11(3)       <---------AHL20(2)                 ----------->GT1 ------ICU4 --------->AHL20(2)              --------->AHL20(2)              ---------->DOF2   catcgcccattaaaaaaaatagatattaagaatttgagttttataaaaaaataaaaattcaatgcattggatattactaaaaggaaactatagttggagt  7630700                                                         <---------TCP20                 --------->YAB1                          ------->TEIL                 --------->AHL20(2)                   --------->ANAC55(2)             --------->AHL20(2)                       <---------ANAC55(2)                         <--             <---------AHL20(2)                      <---------LBD16                           <-----             <---------YAB1                         --------->MYB52(1)                         <-----            <---------AHL20(2)                      <-----------GT1                    --------->SPL7            --------->AHL20(2)              --------->GLK1(2)                         --------->MYB52(1)       <---------YAB1                       <---------ARR11(1)               <---------MYB52(1)<-----     <-----------GT1                        ------->TEIL --------->PCF2     <-------GAMYB    <------- <---------YAB1  <---------AHL20(2)        <---------ARR14(1)     <------ZmHOX2a(1)  <---------SPL7   cttcttattacgattttaattatatatagttggccatttttcttcgaatctaaattacggacccatgaggaaaatgaccgttgtctccgaacgggcttcg  7630800                               --------->O2                               <---------O2                              ----------->STF1                            --------->WRKY12                            ----------->HVH21  <----------DOF2    --------->DEAR3(1)                                                            <- -------ZAT18       --------->ANAC58                                                             <--- ----ANAC58         --------->ANAC46                                      <---------ZAT14        ---- ----ANAC58         --------->ANAC58                                      --------->ZAT14   <-------- ----ANAC46       --------->MYB52(1)                            ------->MYC3        <------------CBF ---DOF2<---------ANAC46  <------------CBF <---------AHL20(2)   <-------MYC3  <---------ZAT6---------   tgggcttattgtttgtaaactcacggcccattgacgtcttcttatttgattcaagaccagaaaccacgttttgtactgtagtcttgaattgctctgttct  7630900                                        ----------->GT1                                            <- --------YAB1                         ---------->DOF2                                            ---- ------At4g35610              <---------AHL20(2)                                                <---- ----->At4g35610        --------->At4g35610  <---------ARR11(3)                                 ----- -ZAT14    ---------->DOF2    --------->AHL20(2)                 <----------DOF2 <---------ANAC55(1) >ZAT14 *TSS            <---------At4g35610  --------->ARR11(3)---------->ID1    <---------ANAC46<---   gctgatagaatagcaaagttctgttctgctgataaattagcaaagtaaatcttgaatgctagtttgtctttttctctcatgttatgtgtaagaagatgat  7631000          <------MYB46(1)          --------->ANAC55(2)          <---------ANAC55(2)         --------->MYB59         --------->MYB111(1)         --------->MYB46(2)        <---------MYB55(1)       <---------MYB52(1)      <-----------HVH21   --------------->AGL15  <-----------------AGL1 --------YAB1   ---------->DOF2 ----->YAB1   --------->ANAC58                                       --------->ETT(2) -----YAB1----------->GT1                                         <---------ANAC46 ---->ICU4<------MYB83    <----------DOF2                     <---------ANAC58                 <----- ------ICU4   --------->ANAC58         --------->YAB1         <---------ANAC58---------->DOF2 <------   gatgactctgttaggtaagaaagtccaactttgtaatctaatcagatttagtctctaattgtttacttgtgtctacatataaaagttgcaagttgcagat  7631100                         <---------ARR14(2)                         <---------ARR11(3)                                                   <------                         --------->ARR11(3)                                                   <------                         <---------GLK1(2)                                                 ------>ZmHOX2a(1)                         --------->ARR14(2)          <----------DOF2                   --------->ARR14(2)                     --------->At4g35610      <-----------GT1                          <---------ARR14(2)                  --------->At4g35610    ---------->DOF2           <------ZmHOX2a(1)<---------TOE2(3)                 <---------ARR14(2)   <---------TOE1(3)           <----------ID1    <---------TOE1(3) ----------------WRI1<---------At4g35610<------ZmHOX2a(1)       <---------ICU4    ---------->DOF2 ---At4g35610    --------->ARR14(2)   <---------TOE2(3)    --------->AHL20(2) <---------TOE2(3)    <-   gttaagaactaagaagtggtatctgcagattttgggtattaaggaaagtttccccctttgaataaataaggacatatactaatgtaaaggttcctccttt  7631200                                                                                             ------>ZmHOX2a(2)                                                                 --------->GLK1(2)         <---------ARR14(2)                                                                 --------->ARR14(2)        --------->ARR14(2)                                                                 <---------ARR14(2)     <---------HSFB2a(2)      --------->YAB1                                             --------->ARR11(3)     --------->HSFB2a(2)     <---------ATHB12                                           <---------GLK1(2) <---------ARR11(3) ----DOF2                                                 <---------At4g35610     --------->ARR11(3) ---DAG2                    >>>>>>>ZML2                <---------At4g35610    <---------ETT(2) ----------GT1     <----------DOF2--------->GLK1(1)   ----------->HVH21    <----------DOF2 <---------AGP1   ttcacaaatcaaaatgtgtttctttgtgttctagtgaaatccaatccattgtgtctctgatgctgagaatcttgaagctttcgacatcttctcgatctgt  7631300                             <---------ANAC58                                                   -----                             <---------ANAC46                                                 <------                             <---------ANAC58                                              --------->ARR14(2)                           XXXXXXXXXXXXXXXXXXXX>MIR779.1                                  <---------CCA1(2)                         --------->MYB46(3)                                             --------->YAB1                        <---------At4g35610          <---------ICU4 <----------DOF2    <---------YAB1                <---------ANAC58      --------->At4g35610          <---------ANAC58   <---------ARR11(3)                <---------ANAC58      <---------At4g35610      <----------DOF2        --------->ARR11(3)         <---------GLK1(2)------->GAMYB             <---------YAB1 <---------ANAC58  --------->YAB1       --------->ICU4   --------->At4g35610XXXXXXXXXXXXXXXXXXXX>MIR414              --------->ICU4   gccattgacaagattatggcttcttcaactgccttgtttctgctcatcttcttcatcatcgtcttctttgctttctgtgcccagcgatgatcatatcgtc  7631400  Previous    Next  AGI:  At2g17525.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G74580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40387.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7630908    to: 7633268    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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