Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 ---------->DOF2                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                       ---------->DOF2                                                                   >>>>>>>>>>WRKY38                                                                   >>>>>>>>>>WRKY43                                                                   >>>>>>>>>>WRKY26                                                                   >>>>>>>>>>WRKY11                                                                   <---------WRKY18(1)                                         --------->At4g35610       >>>>>>>>>>WRKY6          --------->YAB1        ----------->HVH21 --------->ANAC58--------->WRKY45             <----- ------>ZAT14                   ----------->TGA1  --------->ANAC58--------->WRKY12             ====== -------ZAT18                 --------->YAB1      --------->AtLEC2--------->WRKY38(1) <------ZmHOX2a(2) -------ZAT14      <---------ARR11(3)   --------->GLK1(2)       --------->At4g35610  --------->ARR11(3)   tgttctctctaatcacaacaatatcaacattctcatgacgagaagctaaaccaggcaaattgaaacagttgaccaaagaagcaaagagatcaagctcctt  7469200                                   --------->O2                                   <---------TGA1a                                   ==============================bZIP_DOF                                --------->MYB46(3)                                --------->DEAR3(1)                                ------->GAMYB                                =============MYC_MYB                                ----------->HVH21                                --------->At1g77200                                --------->DREB2C(2)                               --------->MYB46(3)                               --------->DEAR3(2)                             --------->DEAR3(1)                             --------->AtMYB61                             <---------ALFIN1                            <---------MYB55(2)                            --------->MYB46(3)                          <---------ALFIN1                          --------->AtMYB61                       --------->ANAC46                       --------->ANAC58                    --------->ZAT18--------->TGA1a                    <---------ZAT18<---------O2                  --------->At4g35610       <---------TOE2(3) --------->MYB46(3)           <----------DOF2                             <--       <---------YAB1  --------->ANAC58           <---------ALFIN1                              <---- -----DOF2        <---------At4g35610    <---------ZAT6                                         ----- ============================================bZIP_DOF<---------DAG2   ---------->ID1      --------->MYB46(3)   tctcagattaacattgagagagctcacaccaccaccgacgggagtcttaagaccacctttcaaacaaactttgttcttcttaatcgattccaacaatcct  7469300                                                                                                    -                                                                                               <-----                                                                                               ------                             <---------SPL7                                                   ------>MYB46(1)                          --------------------->WRI1                                          ------>MYB83              <---------ARR11(3)                       <-------TEIL                          --------              <---------ARR14(2)                    <---------ANAC46                       --------->MYB46(3)              --------->ARR11(3)                    <---------ANAC58                     <-----------GT1 ---------RAV1(2)       ------->TEIL                <---------ANAC58                  --------->MYB52(2) -------HVH21 --------->ARR14(2)                --------->LBD16                       <---------MYB46(3) ->ZmHOX2a(1)<---------CCA1(2)                <---------LBD16                    --------->LBD16-----   tcaggtaaactcttcatatctccatgaacttcgaacggttcgaagtaaaccggagcgtgcatcgcttccatcacttgttgaaccgcgtttgttaccaacg  7469400                       <-----------TGA1                       <-----------HVH21                      --------->ANAC46                      --------->bZIP60(1)                                 ------>ZmHOX2a(2)                     <---------TOE2(3)                                   <------ZmHOX2a(2)                    --------->MYB52(1)                                  <---------ARR14(2)            <---------LBD16                         --------->ALFIN1    --------->ARR14(2)         <---------ARR14(2)                        <-----------HVH21 --------->ANAC55(2)       <-----------HVH21                           <---------ARR14(2)<---------ANAC55(2)  ------>MYB46(1)   <-----------GT1              --------->LBD16     --------->ANAC58  ------>MYB83--------->LBD16                  <---------LBD16       --------->ANAC58  -------->P<---------ANAC46                ----------->HVH21       <---------LBD16           ------- -------->AtMYB61   <---------DOF5.7(2)    <-----------TGA1        --------->MYB52(1)       <-------- ----MYB52(2)<---------LBD16               <-----------HVH21--------->ANAC58 --------->ARR14(2) --->MYB46(3)--------->LBD16              --------->ANAC55(2)   --------->ANAC46          <---------ARR14(2) ->MYB52(1)<---------LBD16                --------->ANAC46  --------->ANAC58 <---------ARR14(2) -->GAMYB--------->ARR14(2)          <<<<<<<<<MYB2 --------->ARR14(2)--------->ANAC55(1)  --------->ARR14(2)   gaccaactccgtctccggggattaacgtcactggtcttggttttccgtcaccgggtctgggcatgtaagtcacggatcgggtctggattttggaaccgga  7469500             --------->GLK1(2)            <---------ARR11(3)            <---------ARR14(2)                                                  --------->HSFB2a(2)            --------->ARR14(2)                                                  <---------HSFB2a(2)            <---------GLK1(2)                                                 --------->At4g35610            --------->ARR11(3)                                                <---------At4g35610           <---------HSFB2a(1)                                           <---------ARR14(2)       <--           --------->HSFB2a(1)             --------->ARR11(3)         --------->YAB1           ------           --------->HSFC1(2)              <---------ARR11(3)   ------>ZmHOX2a(2)         ===========    --------->TOE1(2)                <---------ANAC58       <---------YAB1--------->GLK1(2)    <----- -->LBD16  <---------HSFC1(2)        <---------ANAC58     --------->YAB1 <---------GLK1(2)------>ZmHOX2a(2) -LBD16   ----------->ARR10    --------->ATHB12          --------->ICU4  --------->ARR14(2)<---------   agcgatgctacgaagattcttcagtagagaaaacgattggcgagacatcttcttctgcaattttgatcggaatcagattcttctgaaaatgatcgtcaga  7469600                                                           <---------DAG2                                    *TSS                   <----------DOF2 ----ZmHOX2a(1)            --------->HSFB2a(2)   --------->DAG2 --->At4g35610             <---------HSFB2a(2)  ---------->DOF2                      --------->ANAC55(2) ====HOX2a_HOX2a       <----------DOF2       --------->ANAC58                <------------CBF ----At4g35610         <---------DAG2---------->DOF2  --------->DOF5.7(2)  <---------YAB1 --HVH21           <---------RAP2.6(2)       --------->ANAC58            <----------DOF2 ---------->DOF2   ggaagaagatgaagaagagttgcgactttttggaacgaagaaagaacaagaaaagcgtttacttttagtctataacttttattgtttacataatagcccc  7469700                                                              <---------ANAC46                                                              ----------->GT1                                                             --------->MYB59                                                         ------>MYB83                                                         ------>MYB46(1)                                                       <---------MYB59                                                       ==============================================                                                       <---------------AGL15                                                       --------------->AGL15                                                      ----------------->AGL1            <---------YAB1                 --------->ICU4                       <-----------------AGL1          --------->YAB1                <---------TOE2(3)                     <-----------------AGL2         <---------YAB1             <---------YAB1              <---------------AtSPL8                      <---------TOE2(3)          <---------MYB52(1)    <---------YAB1        <-----------------AG          <-----------GT1      <---------At5g28300       <---------AHL20(2)    ----------------->AGL2   <---------MYB52(1)     <-----------GT1          --------->YAB1          ----------------->AG   ----------->GT1     ----   aaatgtttaaccgttattaatgtttagcccgtttataatttgaattgtacattaagaccaaattgggtaaaaccatgttctgttattaacataatagtcc  7469800                                                        ------------>CBF                                                        ----------------->AGL1                          <---------ANAC58     <---------ANAC46          --------->TOE2(3)                    <---------ANAC58      <------------CBF    --------->TOE2(3)     <---------ANAC58     <---------ANAC58----------->GT1 ========================================================================MADS_MADS -->ZmHOX2a(1)<-----------GT1   <---------AHL20(2)     <-----------------AG                  *TSS   tcgatttcttaacattatacgttttagtccgtatgtaatttagtattttgcttataagaccaatttggaaaaattgaatttttgagttctgtagtagttc  7469900                                                                           --------->KAN4(2)                                                                          <----------TaMYB80                                                                          --------->KAN4(1)                                                                          <---------GLK1(1)                                                                          --------->GLK1(1)                                                                          <---------KAN4(1)                                                                         <-----------ARR10                                                                         --------->ARR11(3)                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)                                                                         <---------ARR11(3)                                                                         <---------KAN4(2)                                                             <---------ARR14(2)                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                             --------->LBD16 --------->ARR11(3)                  ----                                       --------->HSFB2a(1)   --------->GLK1(2)                   ----                                       <---------KAN4(1)     --------->ARR14(2)                ------    <---------KAN4(1)              --------->ANAC58          <---------ARR11(3)            --------->At4g35610    --------->KAN4(1)              --------->ANAC58  <---------AtLEC2   <------ZmHOX2a(1)  <---------At4g35610   <---------KAN4(2) <----------DOF2   --------->MYB46(3)   <---------GLK1(2)          ------>ZmHOX2a(1)   tatggaacaatctcttgtgaaggctttgttgaagaacacgaacaatccgagattagcatggagaatcttcaagaggatattctcttctccttcagaagaa  7470000                                                                            <---------ARR11(3)                                         ----------->RAV1(2)        --------->GLK1(1)                                       --------->ARR14(2)           <---------GLK1(1)                                       <---------ARR14(2)     --------->ANAC58         --------->TOE2(3) ----->ANAC58                         <---------CCA1(2)       --------->ANAC58        <<<<<<<<<ARR2 ----->ANAC58           <XXXXXXXXXXXXXXXXXXXXMIR2937    ---------->DOF2     --------->ARR11(3) ---->DOF2 <----------DOF2------>ZmHOX2a(1)------>ZmHOX2a(1)  --------->ANAC46        <<<<<<<<<ARR1   agccatggcatttctttagatgcgactcctacaatcgctcgtatcctggttcgagccaaaatgcacgaagaaatccaagagcttcacaatcttatactct  7470100  Previous    Next  AGI:  At2g17130.1    Description:  IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2); isocitrate dehydrogenase (NAD+). Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial precursor (IDH2) [Arabidopsis Thaliana] (GB:P93032;GB:Q7XJT6); similar to IDH1 (ISOCITRATE DEHYDROGENASE 1), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT4G35260.1); similar to NAD-dependent isocitrate dehydrogenase gamma subunit [Brassica napus] (GB:AAO61648.1); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434) Range:  from: 7467896    to: 7469636    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g17140.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32353.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO47518.1); similar to Os02g0132100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045795.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7469893    to: 7473708    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version