Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            ----------->GT1    --------                                                                         <---------YAB1 <---------LBD16                                                                         <---------TOE2(3)   <-------            --------->YAB1          ------->MYC3                         <---------TOE1(3)  <-------- ----ZmHOX2a(2)                     <-------MYC3                  <---------At4g35610  --------->MYB52(1) ------ARR11(3)         --------->YAB1                     --------->ATHB12    <-----------GT1 ----->ARR11(3)        <---------ATHB12        ---------->DOF2    <---------GLK1(1)   <---------SPL7   atcatattggagaaacatcatcccaatcttgaaaaacatgtgtataatccaaagttgaagaagattggagatgctatggttaaacggtcttacggaggtt  7407800                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                        =============                                                                                        <---------ANAC58                                                                                        --------->O2                                                                                        <---------TGA1a                                                                                        --------->TGA1a                                                                                     ----------->HVH21                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                                  --------->STY1(2)                                                                                  <---------STY1(2)     ----------->HVH21                                                       --------->ZAT6 --->GT1                                                                 =========================bZIP_DOF --MYB46(3)                      --------->REM1(1)                       <----------DOF2<---------O2 -TOE2(2)         <---------TOE2(3)                         <-----------GT1  <-----------GT1---------   aatctctctgacatagaattaagaatagagagactacaacttgaatcacatgtttatgtttttatcgattctaagcttttcactagcttgacgtctgtaa  7407900                                                   --------->HSFB2a(1)                                                   <---------HSFB2a(1)                                                   --------->HSFC1(2)                          ------            <----------DOF2                      <------NtERF2                             --------->MYB52(1)           --------->MYB52(2)         --------->YAB1 --------->GLK1(2)                 <---------ALFIN1 ======================bZIP_DOF---------->DOF2 <---------DEAR3(1)                   --------->ANAC46 -->GT1  <---------MYB52(1)<-----------GT1 <-------TEIL                             <---------ETT(1)   attagagaaccgttctttgtaatcttttttcaccaaagaatgatgttcgtcggagattccaactcatgttatctccaaaacaatttgcgacacttacggt  7408000                                             --------->WOX13(1)<---------GLK1(2)               ------             ----------->GT1               <---------ATHB12 --------->HSFC1(1)                 ------           <----------DOF2            --------->At5g28300   --------->HSFB2a(2)               <------        <---------AHL20(2)        --------->YAB1            <---------HSFC1(1)                -------        <-----------GT1  <----------DOF2 --------->WOX13(1) <---------HSFB2a(2)        ----------->HVH21 --->At5g28300      <-------TEIL <---------YAB1          --------->GLK1(2)         <---------TOE2(3)   aagaacaaatttactttgtaaattcatctttggttatcacagtaaatcaatcttttgaaattctagaatttctgaacttgaatttgacgatgacagagct  7408100                                                         ------->GAMYB                                                 <---------AHL20(2)                                                 --------->AHL20(2)                                              ------>MYB46(1)                                              ------>MYB83                <---------DEAR3(1)                                        <---------MYB52(1)               <---------------------WRI1                                      --------------->AtSPL8     --------->LBD16    --------->AHL20(2)             --------->MYB52(1) <-----------GT1  <---------DEAR3(1) --------->AtSPL3                <----------DOF2--------->AHL20(2)  --------->ARR14(2) --------->AtSPL8           <------------CBF<---------MYB59    <---------LBD16 ---At4g35610    --------->ZAT6 <---------ANAC58<---------AHL20(2)  <---------ARR14(2) -->At4g35610<-----------HVH21  <---------ANAC58<---------AHL20(1)<---------MYB52(1)   gtaccattaattagtcgtcacactaatccaaattgcttaaccggtaccaaattatttaaccgaagtccggtattcggcgatgcggtctagtgtgttcgga  7408200                                         --------->RAP2.6(3)                               <---------                                         <---------LBD16                                 <------NtERF2                                         <---------At5g28300                            <---------RAP2.3(1)                                        <-----------GT1                                 <---------ERF1                                      <---------GLK1(1)                                 ------>NtERF2                             <---------MYB46(3)                                        <---------RAP2.3(2)                            <---------ANAC46                                           <---------RAP2.6(2)                    *TSS  <---------MYB46(3)  ---------->DOF2                          <---------ANAC46                   --------->ATHB12 <------ZmHOX2a(1)                                  <---------DEAR3(1)     --------->MYB52(1)  <---------AtMYB61--------->ANAC46        <-------TEIL         <---------RAP2.3(3)    --------->ICU4<---------YAB1  <---------TOE2(3)             <---------ARR14(2)    --------->RAP2.6(3)  --------->YAB1  --------->ICU4  <---------TOE1(3)             --------->ARR14(2)<---------ICU4 ----   tgagtcataacgaatggataatgagtgatggtggataaggatttacggcaaagaaaaacagaggcaaattcgttaccagtttaaaaatggcggctttgat  7408300                                                                                                    <     ------>MYB46(1)  ------>MYB46(1)                                                            <---     ------>MYB83     ------>MYB83                                                           <-------   --------->AtMYB61<---------MYB59                                        <---------MYB46(3)<------- -DOF2       <---------MYB46(3)                    <---------GLK1(2)       ----------->GT1  <-------- -->ZmHOX2a(2)     --------->ANAC46          <---------YAB1          <---------STY1(2)  <-----------GT1   ccagaccatccatggtggtaaacccaacttgtaaactctcttgtgttcttattgattctttcgatttcgctatctagtggtttaaaagttttcccctttt  7408400                                                            <---------YAB1                                                          <-------TEIL                                                      <---------TOE1(3)                                                      <---------TOE2(3)                                                      --------->MYB59                                                 --------->LBD16                   <---------ICU4 ---------YAB1                                 <-----------------AGL1           --------->TOE2(3) --------GT1        --------->ANAC46           <-----------------AG    ----------->GT1 ---DOF2            --------->ANAC58        <---------GLK1(1)         <---------TOE2(3) --DAG2             --------->ANAC58        --------->GLK1(1)         --------->DAG2         <------- -DAG2 <-----------RAV1(1)      ----------->GT1<---------LBD16        --------->MYB59  --------->ZAT18   ttctgattactgttgtatagacaagaaactagaattgttgaaaacgaattccggtttaggttcttattgggtaaggtagaatccctaattgcacagtttc  7408500                      --------------->AtSPL8                      --------------->AtSPL3                      <---------------AtSPL8                     ---------->DOF2               --------->ZAT14                 <---------ZAT6           <---------GLK1(2)               <---------WOX13(1)               <---------ANAC46   <---------AHL20(2)                    --------->ATHB12               <---------ANAC58<---------AHL20(2)  <---------ZAT14     <---------AHL20(2) --GLK1(2)     <---------ANAC58--------->AHL20(2) --------->ALFIN1    <---------WOX13(1)   <---------   tctcttaagttcacatctcgtgttaaagtacaattttttattcagtttctcagtgtagcattagtttctctaattgattggaattgaattgggcattttg  7408600                                                                                                    <                                                                  <---------ANAC58                  -           <---------AHL20(2)                                     <---------ANAC58     --------->YAB1        <---------TOE2(2)            <---------YAB1        <--------P       ------->TEIL       ------ -DOF2  ------->TEIL              --------->GLK1(2)  --------->CCA1(2)    <---------ZAT14      <-----   gcattaaacgtatgtaatttagcaattggttctcagtttctgattcaattcatcgatatgggttgatttcttggtctgtacttggttattcatattgagc  7408700  Previous    Next  AGI:  At2g17030.1    Description:  F-box family protein. Identical to F-box protein At2g17030 [Arabidopsis Thaliana] (GB:Q3EBZ2;GB:Q0WRT1;GB:Q7XJL8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G17036.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47506.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 7406185    to: 7408014    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g17033.1    Description:  pentatricopeptide (PPR) repeat-containing protein. Identical to Uncharacterized pentatricopeptide repeat-containing protein At2g17033 [Arabidopsis Thaliana] (GB:Q8GWA9;GB:Q0WPA0;GB:Q7XJL8;GB:Q94K83); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G53170.1); similar to EMB2750 (EMBRYO DEFECTIVE 2750) [Arabidopsis thaliana] (TAIR:AT3G06430.1); similar to pentatricopeptide (PPR) repeat protein-like [Cucumis melo] (GB:AAU04769.1); contains InterPro domain Smr protein/MutS2 C-terminal (InterPro:IPR002625); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7408220    to: 7410728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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