Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------GLK1(1)          --------->GLK1(1)     <---------At4g35610     --------->At4g35610     --------->LBD16   <---------LBD16 ------>ZmHOX2a(2)                                          <---------AHL20(1) -------->GLK1(1)                                           --------->AHL20(1) ---------GLK1(1)                                     ------->TEIL ------ZmHOX2a(2)                                   <---------SPL7 --------ARR14(3)                                  <---------ANAC58 ------->ARR14(3)                                  <---------ANAC58 --------ARR14(2)                                 --------------->AtSPL8 ------->ARR11(3)                                 <---------------AtSPL8         ------>MYB83 --------ARR11(3)                                 --------------->AtSPL3         --------->ANAC58 ------->ARR14(2)                             <---------------AtSPL8             ------>MYB46(1) ------->ARR10  ------>NtERF2             ---------->DOF2   <---------ARR11(3)   --------->ANAC58 ->At4g35610   --------->LBD16  <---------GLK1(1) <---------------AtSPL3    <-----------GT1 --At4g35610   <---------ETT(1) --------->GLK1(1)<------ZmHOX2a(1)   --------->At4g35610     <-------   agatctccgctgaaatcccgacaattgtgaagagaaatctccctcaaagaaggacgtaccaatatatcaatagctgaattaccaagccttccacaatcaa  7405500                                                                              ---------->DOF2                     <---------LBD16    --------->MYB52(1)             --------->GLK1(1)         xxxx              <---------MYB46(3)       ----------->HVH21         --------->GLK1(2)              <---- --ATHB12---------->DOF2     <<<<<<<<<<<<<<<<<LFY    --------->YAB1    <---------GLK1(1)  <----------DOF2   gcttgagactagaaagttgttgattcggaaacaacaatggtctaacagtttccattgacaatgaaacattctgaaatccaaaaagactaaaactttttat  7405600                                 --------->TOE1(3)                                 --------->TOE2(3)                          --------->ALFIN1                  --------->GLK1(1)                                         ----------->HVH21 xxxxxxxxxxxx>smallRNA(s) <---------ATHB12   --------->ALFIN1  --------->ALFIN1 -------GT1       <---------GLK1(1) ---------->DOF2         --------->ARR11(3)                -------   acagtttcagtttgaaatcgaaatccaaatcaaacccttaaagaaatgtggagacttacgaagatgtggaagttgggagtgaaggtgagaacacgagtga  7405700                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                        ----------->HVH21                                                                                       <---------MYB52(1)                                                                                       --------->At5g28300                                                                                      <---------DEAR3(2)                                                                                      --------->LBD16                                                                                     <---------ATERF1(2)                                                                                     --------->ATERF1(2)                                                                                    <------NtERF2                                                                                   ------>NtERF2                                                                                   <---------ATERF1(1)                                                                                  --------->RAP2.3(3)                                                                                  --------->RAP2.3(2)                                           --------->ANAC46                       --------->ATERF1(2)                                           --------->ANAC58                       --------->DEAR3(1)                                           <---------ANAC55(2)                    <---------ATERF1(2)                                           --------->ANAC55(1)                   --------->ATERF1(1)                                           --------->ANAC55(2)                   --------->RRTF1(1)                                ------->GAMYB ----------->RAV1(1)                --------->ERF1------                               --------->MYB46(3)               --------->YAB1   --------->DEAR3(2)                             --------->MYB52(1)                <---------YAB1    --------->RAP2.3(1)                         --------->ANAC58  --------->ANAC58    --------->ICU4   <---------At4g35610 <---------At4g35610     --------->ANAC58--------->CCA1(2)   --------->YAB1     --------->At4g35610 ---->HVH21      <---------AtLEC2 --------->ZAT2           <-----------TGA1     <---------ATERF1(1)   cacagctcttaagtgttttgcaagtagaagccaacgagcagagagacgcaacatcgagtttcgtcataatagtctccaagagagccgccggtaacagatc  7405800                                               ----------->HVH21                                          <------NtERF2                                          --------->LBD16                                          ------>NtERF2                                         --------->DEAR3(1)                                         --------->RAP2.6(2)                                         --------->RAP2.3(2)                                         --------->RRTF1(2)                                         ----------->RAV1(1)                                        --------->RAP2.3(1)                                       --------->LBD16                                              <                                       --------->At4g35610                                          <                                       <---------ATERF1(1) <--------P                        --------                                       ------>NtERF2 <---------DEAR3(1)                    --------->ANAC58           --------->DEAR3(1)         --------->ANAC46--------->MYB55(2)                   <---------ANAC55(2)        --------->ANAC58              <---------ALFIN1<---------MYB46(3)                   ----------        --------->ANAC46            ------>ZmHOX2a(1)<---------AtMYB61               ------>ZmHOX2a(1) -ZmHOX2a(2)                        <---------ATERF1(1)  <---------MYB46(3)         --------------->AGL15 -->ARR11(3)               --------->ARR11(3)  --------->ANAC46                     <---------------AGL15 -->ARR14(2)         --------->ANAC46 --------->DEAR3(1)<---------AtMYB61       <----------DOF2    <- ---ARR14(2)        ------->GAMYB  <---------ALFIN1  --------->ALFIN1   <---------GLK1(2)  --------->ANAC58 -->AGP1--------->ANAC58   <---------ARR11(3) --------->SPL7       --------->MYB52(1)================ --->CCA1(2)      -------->P     ------>ZmHOX2a(1)<---------DEAR3(1)  ------->GAMYB----------------->AGL1   caggcttctctcgccatcgcaaccctcaacatctcctcctccgccgcatacgacggtggtggtagccatcaacggagtctctctttcctgatcaagtaaa  7405900                                <---------ARR14(2)                               <---------CCA1(2)                               <---------GLK1(2)                               <---------ARR14(1)   <---------ARR14(2)    <---------ANAC58   --------->ARR14(2) <--------P------->TEIL                                           <------------CBF --------->LBD16 <---------LBD16<---------ARR11(1)                                   <---------AHL20(1) ---------ANAC55(2) *TSS <---------ANAC58    ---------->DOF2                         --------->AHL20(1) ---------ANAC46------>ZmHOX2a(2)       <----------DOF2                              --------->ARR11(3) ->AHL20(2)    <------ZmHOX2a(2)<-----------ARR10                       <---------AtLEC2    <-------- ->GT1        --------->ARR11(3)--------->ARR14(2)              <-------TEIL         <---------AHL20(2) --------LBD16<---------ARR14(2)--------->GLK1(2)              <------ZmHOX2a(2)  --------->AHL20(2) =====================HOX2a_HOX2a       --------->TOE2(3)     --------->AGP1      <---------AHL20(2)   ttgcggaaattgtggcgatctcgggttgtgtccgaatctcatctttaaaaagtccgaatttttagatccatttttcatggacattaaaatattgatatca  7406000                                                                                        <---------ZAT2                                                                                        --------->ZAT2                                              <-------GAMYB                           <---------DEAR3(1)                  <-----------GT1            <------MYB46(1)                        <---------ANAC58        --------->MYB52(1)              <------MYB83  <---------AHL20(2)            <---------ANAC58        <---------DOF5.7(2)             <------MYB46(1)                        <---------ICU4      --------->DOF5.7(2)       <---------MYB52(1)<---------YAB1              <---------ATHB51      <      --------->At5g28300<---------MYB46(3)  <------MYB83                     --------->ICU4        -  --------->MYB52(1)   <---------MYB52(1)   --------->MYB59                <---------AHL20(2)       - -GLK1(1) <------------MYB.PH3(1) ----------->ARR10----------->GT1        --------->AHL20(2)        <   gacaaaacggtaacggtttatttcggtttgttcagttagatttggttcggttatagttaaatttgattcggtttgataaaattatggctcggctcggtat  7406100                <-----------HVH21               ----------->GT1              <---------DEAR3(2)             --------->ETT(1)           <-----------HVH21         <---------MYB46(3)         <---------DEAR3(2)        --------->ETT(1)      <-----------HVH21  <-------TEIL<---------MYB46(3) --------->GLK1(2)                                                                              <---- --------->ARR14(1)                                                                             <---- --------->CCA1(2)             <---------ETT(2)                                      *TSS      <----- ---------ARR14(2)          --------->DEAR3(1)                                     ------------>CBF -------->ARR14(2)        <---------At5g28300                              <---------AHL20(2) <------ -------->ARR11(1)   <-----------ARR10                                    ------------>CBF   <------- ---------GLK1(2)   <---------CCA1(2)                             ---------->DOF2  <---------YAB1   tagattcgggtcgggtcgggtcaaatctcaccgtcgataactgttatcgagttttcatttctgaagttcaaagctattcaatttcatcaatggtggattg  7406200                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                                                                 ----               <------ZmHOX2a(2)              --------->HSFC1(2)                                -----               <---------RVE1(1)              --------->HSFB2a(1)                               -----              <---------ARR11(3)              <---------HSFC1(2)                               ------              <---------ARR14(2)              <---------HSFB2a(1)                              ------              --------->GLK1(2)              --------->ARR11(3)                                ------              --------->ARR11(3)             --------->GLK1(2)                                <------ZmHOX2a(2)      --------->MYB52(1)   ------>MYB46(1)   <---------ARR14(2)                               =======  --------->ANAC46         ------>MYB83      <-----------ARR10                 --------->MYB52(2)----  --------->ZAT6         <---------MYB59     --------->ARR14(2)                <---------MYB46(3)---- <---------ZAT14 <----------DOF2            <---------GLK1(2)                <---------MYB52(1)====== --------->ZAT14------>ZmHOX2a(2)        --------->HSFB2a(2)               <---------ANAC46  -------- --MYB46(1)   --------->ARR14(2)         <---------HSFB2a(2)               <---------ANAC58  <------- --MYB83     <------ZmHOX2a(1)      <---------ARR11(3)                  <---------MYB52(1)  <-------- ----AtMYB61--------->HSFB2a(1)     --------->ARR11(3)                <---------ANAC58     <---------ANAC58 ---WOX13(1)--------->HSFC1(2)      --------->GLK1(2)                 <---------ANAC58<---------AtLEC2 --ARR14(2) <---------HSFC1(2)     <---------GLK1(2)      ------>ZmHOX2a(2)<---------ANAC58<---------ANAC58   gtctacactaccgaaggatcttttagacctaatttcaaaatctctagaatcttccttcgatctcatccaattccgttccgtttgttcttcatggcgatcc  7406300        <---------RAP2.6(3)   ------>NtERF2  --------->DEAR3(1) --------->ATERF1(1) <------NtERF2 <----------CDC5 ---------ATERF1(1) ----->NtERF2 -------->ABI4(1) --------DEAR3(1) ------->RRTF1(2) ------->RAP2.3(3) ------->RAP2.6(2) ------->ATERF1(2) ------->RAP2.3(2) ------->DEAR3(1) --------ATERF1(2) ------->RRTF1(3) ------>ATERF1(1) ------>RRTF1(1) ------>DEAR4(2) ------>ERF1 ------>ORA47(2) ------>RAP2.3(1) ------>RAP2.6(1) ------ATERF1(1) ----->LBD16                                          <---------LBD16                     <---------ANAC58 ---->DEAR3(1)                          <------ZmHOX2a(2)                                 <---------ANAC58 ---->ANAC46                           <---------ARR14(2)                           <------MYB83 >ZmHOX2a(2)                           <---------GLK1(2)                            --------->MYB52(2) --->MYB46(3)                   <---------At4g35610--------->MYB52(1)               <------MYB46(1) --->DEAR3(2)                   --------->At4g35610<---------DOF5.7(2)              <---------MYB46(3) =======================HOX2a_HOX2a    --------->ARR14(2)                          <---------AtMYB61 ----->At4g35610       ----------->RAV1(1)     --------->LBD16                    <---------MYB52(1) -->NtERF2       ==============================HOX2a_HOX2a                       <-------GAMYB =======================HOX2a_HOX2a  --------->LBD16 <---------ANAC46         --------->LBD16 ->ARR14(2)      ------>ZmHOX2a(1) <---------LBD16----------->HVH21           ------>NtERF2 --ARR14(2)--------->DAG2  --------->ANAC46   --------->LBD16             --------->ARR14(2)<-------- -GLK1(1) ---------->DOF2<---------ALFIN1  ------>ZmHOX2a(1)   <-----------ARR10<---------MYB46(3)   gccgccgagccgaaaagtcctcttccaacacatcatctcccgatcctccccgataacggggggagtctcttccctgattccgccgttggtttccgtctct  7406400  Previous    Next  AGI:  At2g17020.1    Description:  F-box family protein (FBL10). Identical to F-box/LRR-repeat protein 10 (FBL10) [Arabidopsis Thaliana] (GB:Q9SDA8;GB:Q8LF00); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64764.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47445.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 7403419    to: 7405920    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g17030.1    Description:  F-box family protein. Identical to F-box protein At2g17030 [Arabidopsis Thaliana] (GB:Q3EBZ2;GB:Q0WRT1;GB:Q7XJL8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G17036.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47506.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 7406185    to: 7408014    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version