Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->TGA1a                      --------->ANAC58                      --------->ANAC55(2)                      --------->ANAC46                      <---------ANAC55(2)               <------ZmHOX2a(2)              --------->ARR11(3)              <---------ARR11(3)              --------->ARR14(2)              <---------ARR14(3)              <---------ARR14(2)              --------->GLK1(2)              <---------AGP1       <----------DOF2              --------->ARR14(3)   <---------GLK1(1)            ----------->ARR10--------->ALFIN1        --------->HSFB2a(2)===================bZIP_DOF        --------->HSFC1(1) <---------TGA1a                                                         XX        <---------HSFB2a(2)<---------O2                                                          <---        <---------HSFC1(1) --------->O2             --------->ANAC58                        <--------       <---------LBD16--------->ANAC58  <---------------AGL15                              <---------AtMYB61 --------->YAB1--------->CCA1(2)  <---------ANAC58  --------->ANAC58                    --------->ALFIN1 ---------ATHB12------>ZmHOX2a(2) <---------ANAC58--------->CCA1(2)            <----------DOF2-------   gaatcatcttctggaagatctgtaacgcaacgtgaggctttccctcatgaagataagcactaagagcaatgtcgaatagagctttagaaggtggaggtga  7321200                                                                                            ---------                                                                                            ---------                                                                                        <------NtERF2                                                                                       ------>NtERF2         <---------ANAC46                                                              <---------DEAR3(2)        <-------TEIL                                            <------ZmHOX2a(1)     --------->DEAR3(1)       --------->ARR14(1)                               --------->LBD16               <---------DEAR3(1)       --------->GLK1(2)                              <---------LBD16                 <---------At1g77200       --------->CCA1(2)                              <-------TEIL                   --------->ATERF1(1)      --------->ARR14(2)                             --------->ALFIN1                <------NtERF2      <---------ARR14(2)                           --------->ZAT2                   <---------RAP2.3(1)      <---------GLK1(2)                            <---------ZAT2                   <---------ATERF1(1)      --------->ARR11(1)                          <---------TOE1(2)                 <-----------HVH21    <---------YAB1                                <---------DEAR3(1)                <---------SPL7    ----------->ARR10                         <---------At4g35610                  <---------DEAR3(1) XXXXXXXXXXXXXXXXXX>MIR774B                <-------TEIL<---------ANAC46            <---------ANAC46 ------WOX13(1)   <------ZmHOX2a(1)     --------->CCA1(2) --------->ARR14(2)       <---------ANAC58 -At4g35610  --------->ALFIN1---------->DOF2 ------->TEIL <---------ARR14(2)       <---------ANAC58 ---->HVH21  ----------->HVH21          --------->At4g35610--------->CCA1(2)  <---------O2  <--------   tagatgaagattcgggtgaaggagagagttgcaaagagagagagatgcatcggaggtgcggatataggagacgagaagagacttggcgtcggcgaatttg  7321300                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                               --------->LBD16                   ----------->HVH21                          <---------HSFB2a(2)                   --------->ETT(2)                          <---------LBD16                   <---------ETT(2)                          <---------ANAC46                  --------->SPL7                            <---------LBD16                         < >ARR14(2)      --------->TOE1(2)           --------->ARR14(2)--------->HSFB2a(2)              ------ >GLK1(2)       <---------SPL7              <---------ARR14(2)<---------LBD16                 ------- -ARR14(2)   --------->MYB52(1)        ----------->GT1<---------GLK1(1)                       <------   tggtgagagagaagagaacggacgacggagataagtggaagaggtgaatccgatggaaatgcttcggggattgaagtttgagcccattggaagaaagata  7321400                                                                                               <-----                                                                                              <------ZmHOX2a(1)                                                                                           <---------LBD16                                                                                           --------->HSFB2a(2)    <---------ARR14(2)                                                                     <---------HSFB2a(2)   <---------GLK1(1)                                                                <---------TOE2(3) ---------TOE2(3)          <------ZmHOX2a(1)                                    <----------DOF2------ --->CCA1(2)          ----------->HVH21                              <------ZmHOX2a(1)    <---------ANAC46 -->ARR11(3)      <---------ANAC58               <------ZmHOX2a(1) <---------TOE2(3)<---------TOE1(3) ---ARR11(3)      <---------ANAC58   <------ZmHOX2a(1)    <---------ANAC46      =====================   ctagggtttctggtttcttagcgagtgaaggagaagagaggagagaggtaaggagaggctgtgtgatttgaggaatgtagggatttagggtttcgaggaa  7321500                                                          <----------DOF2                                                         <---------ANAC58                                                         <---------ANAC46                                                         <---------ANAC58                                                        <------NtERF2                                                      <---------DEAR3(1)                                                     <---------MYB52(1)                                                  <---------ANAC46                                                 <-------TEIL---------->DOF2                                                --------->GLK1(2)                                                --------->CCA1(2)                                                --------->ARR14(1)                  <---------ATHB12                             <---------TOE2(3) <---------ARR14(2)                  --------->ANAC58                       <---------TOE2(3)       <---------GLK1(2)                   --------->ANAC58            <---------TGA1a  <---------TOE1(3) --------->ARR11(1)          <-----------RAV1(1) ----ARR14(2)       <---------WOX13(1)         --------->ARR14(2)      --------->ICU4             <-- --->ARR14(2)     <------ZmHOX2a(1)          <---------TOE2(3)      <------NtERF2 --------->WOX13(1) =====================bZIP_DOF               ----------->ARR10    --------->RAP2.6(2)          <-----   atgggttttctctgatgtgaggattgatgttagggtttttagtaattgagattcgggtggctttaaagtcgccatttttgttggcaatcaatggaaattt  7321600                                                                                                 ----            ------>ZmHOX2a(1)                                                                   <----     <---------ARR11(3)                                                                        <-----     --------->ARR11(3)                                                                      <-------    --------->YAB1                      ---------->DOF2    <---------At5g28300         --------->ARR14(2)   <---------YAB1                    >>>>>>>>>TBF1   <----------DOF2                   <---------ARR14(2) -------At4g35610                 >>>>>>>>>TBF1      <---------DAG2----------->GT1  <---------ANAC46 ----AHL20(2)  *TSS            >>>>>>>>>TBF1      ------->TEIL    <---------AtMYB61 ----------->GT1   atctgatgatcatcctcgttgtatcgtcaagaagaagaagaagaaagctatgaagctttttcactgtgatggtttaaaactgtgaagcgtatatttaacc  7321700         ------>MYB46(1)         --------->ARR14(2)         --------->MYB52(1)         ------>MYB83       <---------MYB52(2)                         --------->ANAC58       --------->DEAR3(1)                         --------->ANAC58            <---------AHL20(2)      --------->ANAC58                            --------->ANAC46       <---------YAB1      --------->ANAC46                          ------>MYB46(1)          --------->ICU4      --------->ANAC58                          --------->MYB52(1)     --------->YAB1 ----->LBD16                                    ------>MYB83      <---------ANAC58                --- -----LBD16  --------->LBD16                  --------->AtMYB61 <-----------HVH21        --------->ATHB12 ----LBD16 <---------LBD16          <---------RAP2.6(2)   <------ZmHOX2a(1)<---------ARR11(3)-------- ----GT1 <---------ARR14(2)     <----------DOF2--------->MYB55(1) <---------ANAC58      <---------YAB1   gggattacaccgaaccggaaattggagaactcgggttttcggcttaaaccaaacgcaataggaccctgtcgtttcatgatttttttttttttcattggta  7321800                                                         --------->ATHB12                                                        --------->ICU4                                                        <---------YAB1                                                       <---------TOE2(2)                  <----------                                                       <---------TOE1(2)                --------->AHL20(2)                                                      <---------AtLEC2                  <---------AHL20(2)                                                --------->HSFB2a(1)                     --------->AHL20(1)                                                <---------HSFB2a(1)         <---------AHL20(2)                                                <---------HSFC1(2)     <---------YAB1  --------->AHL20(2)                                         --------->TOE1(2)      <<<<<<<<<<GT-3b   <---------AHL20(2)  <---------ICU4                         --------->TOE2(2)    <---------YAB1--------->AHL20(2) ------>ICU4                --------->AtLEC2    --------->HSFC1(2)   --------->YAB1    <---------AHL20(2) --->GT1                 --------->WRKY18(1)   ------->TEIL<---------YAB1  <---------AHL20(2)   <----   aaaatcatttcattctcaaatgttttggtcatgctacatagtacatacgaattttcgcatgattatttttcttataatttatattttaaaaaaattggat  7321900                                                      --------->ATHB51                                      <---------AHL20(2)                                      --------->AHL20(2)                                     <---------AHL20(2)                                     --------->AHL20(2)                                     --------->AHL20(1)        <---------YAB1                                     <---------AHL20(1)<------------CBF                                 <---------AHL20(2)  <---------YAB1                                 --------->AHL20(2)--------->ATHB51                            --------->AHL20(2)     <---------ICU4                            <---------AHL20(2)     -------->ATHB1                           --------->AHL20(2)      -------->HAHB4                       --------->AHL20(2)          --------->YAB1              --------->GLK1(1)  --------->AHL20(1)<---------AHL20(2)   ----------->GT1     <---------AHL20(2)         <---------ATHB51  --------->DAG2      <---------AHL20(2)       --------->AHL20(2) <---------ZAT14      --------->AHL20(2)       <---------AHL20(2) ---------->DOF2  <----------DOF2<---------AHL20(1)<--------HAHB4   <---------TOE1(2) --------->ZAT14  --------------->AGL15        <---------YAB1 --------->KAN4(2) --CBF        <---------GLK1(1) --------->AHL20(2)<---------YAB1    <---------TOE2(3)  --------->YAB1 --ZmHOX2a(2)<---------GLK1(2)  <---------AHL20(2)--------->ICU4    <---------TOE2(2) <-------TEIL   cagtaaagtaaaacagatttctttttaaattaaaataaatttatttgttttaattattattgtttattcttaggtttactgtatgacattcatatttctc  7322000                                           <-----------GT1                                           <---------AHL20(2)                                       --------->AHL20(1)            <----------DOF2                                       --------->AHL20(2)         <---------ARR11(3)                --------->At4g35610    <---------AHL20(2)         --------->AHL20(1)            <---------ANAC58          <---------AHL20(2)          <---------AHL20(1)                -            <---------ANAC46          --------->AHL20(2)         --------->CCA1(1)      <---------YAB1            <---------ANAC58        --------->YAB1 <-----------GT1--------->ARR11(3)    ----------->GT1   --------->TOE1(3)              --------->AHL20(2)       ----------->GT1    <------------CBF    ---   --------->TOE2(3)         ----------->GT1 --------->ANAC55(2) --------->RVE1(1)   --------->ICU4 <   caaaaccttattttgcgtagctacagacaaatagaaaaaaataatttacttatttacaagttagaaaatatcttttgcgaaattgaaatgttgataaatg  7322100  Previous    Next  AGI:  At2g16880.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78081.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69006.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7319228    to: 7321615    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g16881.1    Description:  unknown protein Range:  from: 7321661    to: 7321795    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version