Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       ------>ZmHOX2a(1)                 <---------ARR14(2)                 --------->ARR14(2)          <---------ARR11(3)         ------>ZmHOX2a(1)          --------->ARR11(3)        --------->TOE1(3)                               ----------->GT1      <---------AHL20(2)            --------->TOE2(3)                             <---------ANAC58     <---------AHL20(2)     --------->MYB52(1)                                    <---------ANAC46     --------->AHL20(1)   <---------MYB52(2)                                      <---------ANAC58     --------->AHL20(2)   <---------MYB59--------->ZAT6<---------ZAT2------>ZmHOX2a(2) ->DOF2  --------->RVE1(1)<------------MYB.PH3(2)      <---------At4g35610       <---------ZAT18-----   gtccaaatttaatatctcaaatcctataactaactaatccttaacactatcagtttcagctagtcatttgatcgaacacttggtgcgcgtaaaacatgag  7290300                                                                           <------NtERF2                                                                          ------>NtERF2                                                                         --------->RAP2.6(2)                                                                         --------->DEAR3(1)                                                                         --------->ATERF1(2)                                                                         --------->RAP2.3(2)                                                                         --------->RRTF1(3)                                                                         --------->RAP2.3(3)                                                                         --------->DREB2C(2)                                                                         --------->RRTF1(2)                                                                        --------->ATERF1(1)                                                                        <------NtERF2                                                                        --------->RAP2.6(1)        <-                                                                        --------->ORA47(2)      <----                                                                        --------->RRTF1(1)      <----                                                                        --------->DEAR4(2)     ------                                                                --------->ATHB12               ------                                                               --------->ICU4                  <-----                                                               ------>ZmHOX2a(1)               <-----                                                            <------ZmHOX2a(2)         --------->ARR14(2)                                                           <---------ARR14(2)        <---------GLK1(2)                                                           --------->ARR14(2)      --------->LBD16<--                                                           --------->ARR11(3)      <---------TOE2(2)-                                                      --------->DAG2    --------->RAP2.3(1)    ------                                    <------ZmHOX2a(2)---------->DOF2    --------->ERF1<---------ARR14(2)                              <---------LBD16    <------ZmHOX2a(1)     <---------RAP2.3(1)    <------                         --------->ARR14(2)      ===================HOX2a_HOX2a    <---------TOE1(2)<                         --------->GLK1(2)  --------->TOE1(3)  <---------YAB1     ===================                        <---------GLK1(2)   --------->TOE2(3)------>ZmHOX2a(2)<---------ARR14(2)<----                   <----------ID1   ====================HOX2a_HOX2a    <---------ATERF1(1)   <-------            ----------->RAV1(1)--------->LBD16   ==================HOX2a_HOX2a--------->ARR14(2)<---- ---->At4g35610  --------->MYB52(1) ==================================HOX2a_HOX2a <-----------RAV1(2)   ctataaatattgtccaacaaaacgaagaatctccagggatcaaataccttaggaataaagggatcctgattagcgccgcctatcccaggttctgcgtttg  7290400       --------->MYB52(1)       <---------DOF5.7(2)   <------NtERF2 <---------ANAC46  ------>NtERF2 <---------LBD16  ----------->HVH21 --------->ETT(1) --------->DEAR3(1) ----------HVH21 <------NtERF2 -----ANAC58    <---------ATERF1(1) -----ANAC58<---------TGA1a                   --------->LBD16 --->MYB55(2)   <---------DEAR3(2)           <---------HSFB2a(2) --->MYB46(2)   <---------RAP2.3(1)          --------->HSFB2a(2) ----AtMYB61--------->bZIP60(1)             <---------LBD16 ----MYB46(3)  <---------DEAR3(1)          --------->MYB52(1) ---------RAV1(1)--------->ATERF1(1)   --------->ZAT6 -------->ALFIN1------>NtERF2         --------->ZAT18                                              <- --->MYB52(2) --------->ATERF1(1)     <---------ZAT18                                              -- ---MYB55(1)--------->O2       --------->ARR14(3)                                                  -- ------NtERF2 --------->DDF1   --------->GLK1(2)                           <---------ZAT18     ------ =========RAV<-----------HVH21 --------->ARR11(3)                     <---------ANAC58         <----- --MYB83    <---------O2       <---------ARR11(3)           <---------ANAC46    --------->ANAC58   <- --MYB52(1) --------->TGA1a    <---------ARR14(3)     <---------------AtSPL8    --------->ANAC58   -- --MYB46(1) <---------bZIP60(1)<---------ARR14(2)    <---------YAB1   <---------ANAC58       --------   gtgtcggggtaacgacgtcggcgaccatgagaaaatcttgagcactaccggaagtatgagtaccgagtataagcttgtggacaccgaagtaagagtctgc  7290500            <---------ANAC58            <---------ANAC46      <---------ARR14(2)      --------->ARR14(2)     <------ZmHOX2a(1)    --------->ICU4                                               <------ZmHOX2a(2) --------ANAC46                                         <------MYB46(1) ------->ANAC55(2)                                      <---------ANAC58               <---------ANAC58 ------->ANAC58                   --------->At5g28300   <---------ANAC58--------->ARR11(3) --->At4g35610            --------->MYB52(1)            <------MYB83---------->DOF2    <---------ANAC46 ----At4g35610<------NtERF2     <---------DEAR3(1)     --------->MYB55(2) ------>ZmHOX2a(2) --------ANAC55(2)     --------->ANAC58                <---------MYB46(3)<------ZmHOX2a(2) ------->ANAC58        --------->ANAC58 --------->CCA1(2)       <---------ARR11(3)     <---------ANAC58 ->ZAT18    <---------ANAC58   <---------ORA47(1)     --------->ALFIN1  <---------ARR11(3)     <<<<<<   tacgtaaggatttggcgtcgatggaacccaatggacggtgagagatggccattcgagtgggtgagagatcaaaagatcgtagagaaatggtgtgttcttc  7290600                        ----------->HVH21             --------->At4g35610           --------->GLK1(2)                          ----------->RAV1(2)           <---------ARR11(3)                         <---------At4g35610           --------->ARR11(3)                    --------->TOE2(3)     ----------->GT1   <---------MYB59           --------->TOE1(3)  <---------ALFIN1    ----------->RAV1(2)    ------>ZmHOX2a(1) <---------ARR11(3)  --------->ANAC46------>ZmHOX2a(1)       ------>ZmHOX2a(1)  --------->ICU4 <<<TBF1   <-----------ARR10       ------>ZmHOX2a(1)--------->REM1(1)   ttccacacagaaaaatcttcctcgacctgacccattcctgtctcctccttaccttcatctgccattatctctctcgcctctcaatctacttctctctctc  7290700                                   >>>>>>>>>E2Fd                                   >>>>>>>>>E2Fc                                  --------->LBD16                                  ------>NtERF2                                 --------->ANAC46                                 --------->ANAC58                                       <------------CBF           <---------TOE1(2)     <<<<<<<<<<E2Fa                                         -------------     ------>ZmHOX2a(2)       <xxxxxxxxxxxxxxxxsmallRNA(i)                      <---------DAG2   --------->ARR14(2)        <-----------GT1      <---------At4g35610          <----------DOF2   <---------ARR14(2)       *TSS<---------LBD16   --------->At4g35610       <-----------GT1      <---   --------->ARR11(3)  <--------P--------->ANAC58 <---------ZAT2 ----------->HVH21   ------------>CBF   <---------ARR11(3)  <---------WOX13(1)     --------->ANAC46<---------DEAR3(1)    <-----------GT1   tcgctgatcttcgagggtttttctggttgattttcccgccaaaaatacacagagctgatcaagggctgtgatgctgttttactttttcacaattgaacgc  7290800                                     <---------MYB46(3)                                    --------->ALFIN1                                  <---------ANAC46                                --------->At4g35610                              <-------PIF4                              <-------PIF5                              ------->PIF4        <---------At5g28300   ------->MYC4                                           <---------ANAC58       <-----------GT1        ------->PIF5                                           <---------ANAC58     <----------DOF2          ------->MYC2                                         <---------AHL20(2)   <---------RAP2.6(3)        <-------MYC3                                     <---------AHL20(2) ---------->ID1               ------->MYC3                                     --------->AHL20(2) -------->WRI1                <-------MYC2                                  --------->TOE2(3) -------DOF2                ------->TEIL                          ---------->DOF2  <-----------GT1   tttgccgttttactgtttcgaaacagcatgcatgtgctgtggatgctggttttgagtttatgggcctgtaaagcccattcttaaattacttgctcaaact  7290900                                  ------>ZmHOX2a(1)                        <---------ANAC55(2)       --------->ANAC46                  <---------AHL20(2)          -------->P                                            -                  --------->AHL20(2)          ------>MYB83                                <---------WOX13(1)                  --------->AHL20(1)          ------>MYB46(1)             <---------YAB1--------->ATHB12                 --------->AHL20(2)      --------->ANAC46       <-----------GT1        <---------YAB1  <---------AHL20(2)  <-----------GT1------>ZmHOX2a(1)         <---------YAB1   ---------->DOF2     <   acatttttttgttcagaaaattaattacctatagtcctcctatacaccaactaggcaactatgttataactatgttataactaaaagttttgattgctgt  7291000                             <---------ZAT14                             --------->ZAT18                             <---------ZAT18           =================================================MADS_MADS           <---------------AGL15--------->ANAC46       <---------YAB1                             <--      <---------ANAC58       --------->ZAT14         --------->YAB1                         ---------      <---------ANAC58   <---------------AtSPL8     <---------YAB1                          <--------    <-----------GT1 ----------->HVH21            <---------AHL20(2)                         <-------- --------->CCA1(2)--------->bZIP60(1)            <---------YAB1                     <------ZmHOX2a(1) -------->ARR11(3)<---------bZIP60(2)           --------->AHL20(2) --------->YAB1<---------LBD16  <-- ---------ARR11(3)<---------bZIP60(1)       --------------->AGL15  --------->AHL20(2)     -----------   gagatataacttgctatatgatgtgacatagtacacataaacaataccatttttattatgagagttcaataaaacttgaatactcaggaagtaagatttt  7291100    --------->AHL20(2)    <---------AHL20(2) -------ANAC58 >ARR11(3) -ARR11(3)                       <-----------GT1                      --------->TOE2(3) -GLK1(2)                     --------->YAB1  <---------At4g35610    ----------------->AGL1    <----- -------ANAC58                ----------->GT1 --------->At4g35610<----------DOF2      --------->GLK1(2) >ARR10             ---------->DOF2--------->ZAT6        <-----------GT1       <-------TEIL    ------   gcttatttatatatgtagaatacaaagatgaatagtaacaatactatgtgctgagaatttcacaagtctttacctcaagggttcaaagaatttgctacca  7291200  Previous    Next  AGI:  At2g16780.1    Description:  MSI2 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2). Identical to WD-40 repeat-containing protein MSI2 (MSI2) [Arabidopsis Thaliana] (GB:O22468); similar to MSI3 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3), protein binding [Arabidopsis thaliana] (TAIR:AT4G35050.1); similar to putative retinoblastoma binding protein [Gossypium hirsutum] (GB:ABC79303.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 7288544    to: 7290728    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g16790.1    Description:  shikimate kinase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO62220.1); contains InterPro domain Carbohydrate kinase, thermoresistant glucokinase; (InterPro:IPR006001); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) Range:  from: 7291039    to: 7292319    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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