Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        ---------->DOF2                           <----     ------>ZmHOX2a(1)                               <---------AHL20(2)                   <---------AHL20(2)  ------>MYB46(1)                                    --------->AHL20(2)                  <---------AHL20(2)  ------>MYB83                                     <-----------TBP                       --------->AHL20(2) ------>GAMYB                                    <---------------AGL15                  <---------YAB1 -------->AtMYB61                                --------------->AGL15               <---------YAB1-- ------->MYB46(3)------>NtERF2          ------------>CBF                            <---------GLK1(2) ---ID1   <---------CCA1(2)<------------CBF   <-----------GT1                     --------->ICU4-----   aaccatccttccatctctccgacttcccatattgttttgtttctcaattttctatttaaagacatctaaaaaatgaagaaaacaaagattattaatttct  7204800                                                                                                -----                                                                                              <------                                                                                              <------                                                                                              -------                                                                                            <--------                                                                                          --------->YAB1                                                                                       --------->YAB1                                                                                      --------->ICU4                                                           <------ZmHOX2a(2)          <---------YAB1                                                          <---------ARR11(3)        <---------ICU4                                                          --------->ARR11(3)        --------->YAB1                       ----------->GT1                --------->YAB1               --------->ICU4    --------->ZAT14  <------------CBF                --------->ICU4        --------->YAB1 <---------ICU4 -----HSFB2a(2)      >>>>>>>>>ARR2                   <---------ATHB12 <---------GLK1(2)<---------ICU4 -------->DOF2      --------->ATHB12             ------------>CBF     <---------ARR14(2) <---------YAB1 ---->HSFB2a(2)    <---------YAB1            --------->TOE2(3)        --------->ARR14(2) --------->ICU4   acaaagtaaactcatcttattttgattgtaatttcgagttactaatacattagcaatgaagatcagtccatggatactcatagccatcatcatgatgatc  7204900                                                                             <---------ANAC46                                                                             <---------ANAC58                                   XXXXXXXXXXXXXXXXXXXX>MIR399B/C            <---------ANAC58                              <------MYB83                               <---------ANAC58                              <---------MYB46(3)                         <---------ANAC58                              <------MYB46(1)                           --------->STY1(2)    --------->ATHB12         <---------AtMYB61                    ------>ZmHOX2a(2)    <---------ICU4           <---------TOE1(2)                  --------->ARR11(3)    <----------DOF2 --------->YAB1              <---------DEAR3(1)                 <---------ARR11(3)   <---------DAG2 ->ZmHOX2a(2)               <---------MYB52(1)                  --------->ARR14(2) -------->P ---ARR11(3)                <---------------------WRI1          <---------AGP1     ------>MYB46(1)  < -----ARR10               <---------MYB46(3)   -------->P       <---------ARR14(2) ------>MYB83    -- -->ARR11(3)         ---------->DOF2        --------->At4g35610<---------CCA1(2)--------->SPL7  ----- -YAB1             <------ZmHOX2a(2)   ---------->DOF2<-----------GT1   <---------STY1(2)       <----   ttagcatcatttccttctccgatcaaagtcgttggtgcaaaaaaagagctaccattttgcaatctggatcttctagcttgcgtccaaccttttctagtta  7205000                                                                                 --------->ANAC58         <------NtERF2                                                           --------->ANAC46        --------->ANAC58                                                ------>ZmHOX2a(1)        --------->ANAC58                                           <---------GLK1(2)   <---------LBD16                                           <-------MYC2        --------->ANAC58   - ----------->HVH21                                           <-------MYC3 --------->SPL7         ---- --------->WRKY18(1)       <-------GAMYB                     ------->MYC3 --------->RAP2.6(3)    ---- -----------HVH21         <---------MYB46(3)            <---------YAB1 <---------ANAC58   --------->GLK1(2) ----->GAMYB         ---------->DOF2                    --------->AtLEC2<---------SPL7    <---------- ---->MYB52(1)      --------->MYB52(1)      --------->DAG2   ------->MYC2--------->MYB52(1)      ---- -----DOF5.7(2)     ---------->DOF2        ---------->DOF2 ------->TEIL<---------ANAC58  <---------GLK1(2)   acggtcacggaggcaaactgcctaaaggctgttgtgagaaaatgaaaaagtcaacatcatgcatgtgtagattccttacggccaaggaacagaatctaaa  7205100                                                                                             <-------                --------->GLK1(2)                                                          <---------ICU4    --------->At4g35610                                                                    -------->HAHB4    <---------At4g35610                                                                    --------->YAB1 <---------ZAT2<---------ARR14(2)                                                         --------->ICU4 --------->ZAT2--------->KAN4(2)                                                        --------->YAB1 --------->At4g35610                                                                    --------->ATHB51 <---------At4g35610     <-----------GT1                                                <---------ICU4 ------>TEIL  --------->HSFB2a(1)                                                       <--------HAHB4 ----->ANAC46 --------->KAN4(1)                                                        <---------YAB1 ----->ANAC58 <---------HSFB2a(1)           <------------CBF                           --------->ICU4 -ARR10       <---------KAN4(1)          ------------>CBF                          ------>NtERF2 ----->ANAC58<---------KAN4(2)   <-----------GT1      --------->AHL20(2)        ------>ZmHOX2a(1)   -   cgcagctgctcatagaatattctggttttgccatatttctgtccccaattgtccaaaaatataggggttataggttatgttcctcggccataattatgac  7205200                                                                                          --------->ANAC58                                                                                          <---------ALFIN1                                                                                          --------->ANAC58                                                                                       <---------ZAT18                                                                                     --------->ZAT14                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                            <---------ARR14(2)                                                                  <---------ANAC46   --------->At4g35610                                                <--------P     <---------O2 --------->GLK1(2)           ----------->GT1            <-----------------AG     --------->O2 --------->ARR14(2) --YAB1  *TSS                         <-----------------AGL1   <---------bZIP60(1) ------>ZmHOX2a(2) -------------->AtSPL8            --------->ALFIN1             --------->bZIP60(1)<------ZmHOX2a(2)   actttgtactaaaatgttataacacctatgggcaaggtgtttctaaattggtaagtcggaaaacgacgtcgtttacaaaatccgatctgcacacacactc  7205300                                              <-----------HVH21                                             --------->ANAC46                                             --------->ANAC58                                 ---------->DOF2  ---------->DOF2                                 ======================bZIP_DOF                          <---------DEAR3(2) --------->ANAC58                       <-----------HVH21     ================bZIP_DOF                    <---------DOF5.7(2)      --------->ANAC55(1)                   <---------WRKY45          <---------ANAC55(2)                   <---------WRKY38(1)       ============================================bZIP_DOF         <---------ANAC58<---------At1g77200 <---------O2  --------->ANAC58              <----------DOF2         <---------ANAC58<---------DREB2C(2) --------->TGA1a  ------->TEIL    <----------DOF2      <-----------RAV1(1)<---------DEAR3(1)  --------->O2  --------->ANAC58  <---------ANAC58  --------->YAB1   <---------WRKY12          --------->bZIP60(2)             <---------ANAC58       - <-------TEIL     --------->DOF5.7(2)--------->YAB1      ---------->DOF2 --------------------->WRI1--   acattcatatgtcgttcttcgtcaacgtcggtgaagaaagcataaacacgtcaaaagacaaaagcacctctgtcttcttgctttcttcgcccttttactt  7205400          <------ZmHOX2a(2)         --------->ARR11(3)         <---------ARR11(3)    --------->ANAC46 --------->TOE2(2)                      <---------ICU4 --------->TOE1(2)                      --------->YAB1 ------->GAMYB               --------->TOE2(3)<------ZmHOX2a(1)                               <------ -------->MYB46(3)         ------>MYB46(1)   <----------ID1              <----------DOF2     <------- ------->ANAC46            ------>MYB83--------->ICU4                ---------->ID1    ---------->ARF1   caacccacgaagatcaattcaactaaaccaatctcaaaaccatcatgaggacaagttttagacttctcttcttcgctttccttctacttgtctcaccttt  7205500                                                                       <----------DOF2             <----------DOF2                                          ------>ZmHOX2a(2)    ----------->GT1                                                  <---------YAB1   <---------TOE2(3)                                                <---------ARR11(3) ---------->DOF2                                                    --------->ARR11(3)     <---------ANAC46 ----DOF2   <---------DAG2                                      --------->ANAC55(2)--------->ATHB12 --DAG2  <---------ALFIN1         --------->ATHB12   <------------------------ANAC81    <---------YAB1   tctcaaaggtaacacctttctcttctacttgttcattcatttgctgattctactctgtttttgttcacatgatctttgtttgaattcattgtgatgggtt  7205600                                                    <---------HSFC1(2)                                       --------->GLK1(2)                                      <---------ARR14(2)                                      --------->ARR11(3)                                      --------->ARR14(2)                                      <---------GLK1(2)                                     --------->HSFB2a(1)                                     --------->HSFC1(2)                             --------->ARR14(2)     <---------HSFB2a(1)                             <---------GLK1(2)      --------->HSFC1(2)                        --------->MYB52(1)   <---------ANAC46                       --------->WOX13(1)    <---------ANAC58   <---------MYB46(3)               --------------------->WRI1    <---------ANAC58   <------MYB46(1)               <----------DOF2       <---------HSFC1(2)         <------MYB83              <---------ANAC58       <---------HSFB2a(1)    <-----------RAV1(1)              <---------ANAC58      ----------->ARR10 --------->GLK1(2)         --------->MYB52(2)  <---------ARR14(2)     --------->HSFB2a(1)                 <------ZmHOX2a(1)   ttgtttgtttttagttgctttgtgccaatcggattcggaagattctggcttcgaagtttctgatgttggtgaagaagagagtgatgcagaggaagttttt  7205700  Previous    Next  AGI:  At2g16594.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16592.1); contains InterPro domain Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); contains InterPro domain Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140) Range:  from: 7204856    to: 7205164    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g16595.1    Description:  similar to translocon-associated protein alpha (TRAP alpha) family protein [Arabidopsis thaliana] (TAIR:AT2G21160.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77171.1); contains domain PTHR12924 (PTHR12924) Range:  from: 7205209    to: 7207379    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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