Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <          <---------MYB59                                                                       <----          --------->TOE2(3)                                                                     -----          --------->TOE1(3)           <---------------AGL15       --------->AHL20(2)           <-----    --------->ANAC46                  --------------->AGL15   --------->ICU4                   ------  <---------ALFIN1                  ------>MYB46(1)       <-----------TGA1                     <----- ---->ZmHOX2a(2)          <------ZmHOX2a(1)          <-----------GT1                       <---------AHL20(2) ------>GLK1(1)          <----------ID1       <------ZmHOX2a(1)--------->YAB1           --------->TOE2(3) ----->ARR11(3)        <---------ICU4<-----------------AGL1   <---------YAB1            ----------->GT1 ------ARR11(3)    <---------YAB1   ------>MYB83 <---------ARR11(3)                    ----------->GT1 ---->ZAT14   ---------->DOF2     <---------MYB59--------->ARR11(3)            ----------->GT1 ------   atctccacataacctaaaaagatgataaggacaaaacctactcaattaggagatttttctcgtcatcataaatttttgttttggttaaaatgttaaattt  7169300 ---------AHL20(2)             --------->YAB1 -----AHL20(2)                <---------ATHB12 ---->AHL20(2)     --------->AtLEC2                  --------->ICU4 ----AHL20(2)      --------->ANAC58             ----------->GT1 --->AHL20(2)      --------->ANAC58           ----------->GT1                      <---------ARR11(3) ----AHL20(1)    <---------ANAC58      ---------->DOF2<---------AHL20(2)           --------->GLK1(2) --->AHL20(1)    <---------ANAC58    --------->TOE2(3)<---------ICU4  <-----------GT1           -----   attttaaaaaacaagtttggcatgcaaaactaatcaaaacctaaagaaatgtgtaaatatttcaagaacaatttaccagttcaaaaatctgaaaatgatc  7169400                       --------->LBD16                     ------>ZmHOX2a(2)   <---------MYB52(1)                               --------->LBD16                     ==================================HOX2a_HOX2a                       <---------ANAC58           --------->CCA1(2)    --------->ANAC58                                         <---------ANAC46          <---------ARR11(3)    --------->ANAC58                                        <---------LBD16          --------->ARR11(3)    --------->ANAC46                                   <---------YAB1        <---------TOE2(3)      <---------LBD16   <---------TOE1(2)                --------->At5g28300 ->ZmHOX2a(2)<---------YAB1   --------->MYB52(1)------>ZmHOX2a(1)     <---------At4g35610<---------ANAC58   gcagtagattgagatatgagtgatccccaaactcacggcttcagttagtcctagcttcaatgccataagttcagcctccaaaactgtaattgcggagtca  7169500                                                                    --------->AtMYB61                                                                   <---------MYB52(2)                                                                   <---------ALFIN1                                                                 ----------->RAV1(1)                                         <------NtERF2    <---------ARR14(2)                                         --------->LBD16  --------->ARR14(2)                                        --------->RAP2.6(2)   ------>ZmHOX2a(1)       <----------DOF2                  --------->ANAC58 ------>MYB83   --------->ZAT14                      --------->ANAC58 ------>MYB46(1)   --------->ZAT18               ------>ZmHOX2a(1)     --------->AtMYB61               <---------DAG2   <---------ZAT18            ---------->ID1        --------->REM1(1)               ------>ZmHOX2a(1)   <---------ZAT14        <---------GLK1(2)       ----------->RAV1(1)           <-----------GT1   tgaagtgaacttttcacttgaaacaagagattgtcctcttggccgcaaattgcaacaccaaatcctgccacaaaccctcttgtttcctcccttatcaaac  7169600                                 <---------ANAC46                         <----------DOF2                              ----------->HVH21                        <---------ARR11(3)                              ----------->TGA1                  ------>ZmHOX2a(1)            --------                        --------->ARR14(2)                    *TSS     --------->GLK1(2)    <--------                        <---------ARR14(2)                  <---------ARR11(3)            ------>ZmHOX2a(1)                  --------->WOX13(1)                        <---------ARR14(2)            <---------MYB52(1)                --------->AHL20(2)                          --------->ARR14(2)<---------TOE2(3)                <---------AHL20(2)                         <---------CCA1(2)  <---------TOE1(3)      ---------->DOF2--------->YAB1                 <---------GLK1(1)  --------->ARR11(3)--------->TOE2(3)   ccttgaagtaaagtctatataaatcagaactggtgacggtttttggccatcttgagttcccatatcctccaagtatctttaaggttgttttccttaggtt  7169700                                                                                              -------                                                                                          <---------ANAC58                                                                          ------>ZmHOX2a(1) <-------- --->GT1                                 <------MYB46(1)          <---------AHL20(2)      <---------ANAC58 -TOE2(3)                                <------MYB83            --------->AHL20(2) <------ZmHOX2a(1)   atatgactcttaatacacttgtgagaataagtttgttcttgtttggttttgaattagtcttttgaaaataaatctcctagattgtaggagtaacttgttg  7169800                                                      ----------->ARR10                                                  <---------HSFB2a(2)                                              <-------GAMYB                                             --------->MYB52(2)          <---------GLK1(2)                  --------->MYB55(2)   --------->AHL20(2)      ------>ZmHOX2a(1) <---------MYB46(3)  <---------YAB1           <---------MYB52(1)<-----------RAV1(1)                            <-------- --->ID1<---------TOE2(3) --------->TOE2(3)  --------->MYB111(2)                 <---------AHL20(2) ---RAV1(1)   <---------YAB1             <---------TOE2(3)                ----------->GT1 --------->YAB1   ctctattatttagattatgttttagtttccttagttatctactaagtttgttggagaagacttgctcttcaccgattagttatttaagtctattatgcta  7169900           <---------ANAC46                                               --------->HSFB2a(2)          --------->DAG2                 <---------WOX13(1)       <---------ARR11(3)         --------->ZAT14              --------->ICU4              --------->ARR11(3)                -         <---------ZAT14         --------->ANAC58      --------->ANAC58   <---------HSFB2a(2)       < <---------YAB1                  --------->ANAC58      --------->ANAC58  <---------LBD16           <- -YAB1   ---------->DOF2    ---------->DOF2--------->ATHB12 ----------->GT1                    <-----   gttatgcttagtaaagtgtatcgatgaaaaaaaagaagccaagattgatttcataagaagcaaggtaagataattttcggaagtcttggatttagtaatg  7170000                                                                                 ----------->GT1                                                                                --------->ANAC58          --------->ZAT14                                                       --------->ANAC46          <---------ZAT14                                               --------->LBD16     <---------MYB52(1)     <-----------GT1                            --------->HSFB2a(2) -------->ANAC55(2)   ------>MYB83                                     <---------HSFB2a(2) ---------ANAC55(2)   ------>MYB46(1)                                 <---------LBD16 ------TEIL          ----------->RAV1(1)           ----------->GT1    <---------ANAC46     ------->TEIL ----------AtSPL8  --------->MYB46(3)   --------->YAB1      <-----------GT1     --------->ANAC58    <   gtacgtagttagtttactaaaaccaacatttttcattccaaatcgtagtcaaatagttatattaacaacatttcgggaatacaaggaaaattgaacccaa  7170100                            --------->At4g35610                  ---------->DOF2                            ----------->RAV1(2)               --------->At5g28300        <---------ALFIN1                  ----------->GT1   --------->ANAC58   --------->ANAC58           ---------->DOF2            --------->TOE1(2) ------->GAMYB            --------->ANAC58 <---------At4g35610 ----------ID1  <------ZmHOX2a(1)   --------->ANAC58   --------->ANAC46 --------->At4g35610   <------   aaaaaacaaaaaaacttaggaggtattatcaactggccaagtaaacgagtcgaactcatgccactgtaaaagacagctaaatgccaaagtcacactcttt  7170200  Previous    Next  AGI:  At2g16520.1    Description:  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G45570.1) Range:  from: 7169004    to: 7169662    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g16530.1    Description:  3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein. similar to 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein [Arabidopsis thaliana] (TAIR:AT1G72590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48243.1); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) Range:  from: 7170071    to: 7172405    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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