Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------AHL20(2)                                                              --------->YAB1  <---------ATHB12     --        ------>ZmHOX2a(2)                                     <---------AHL20(2)                   -- ------>HVH21                                                 --------->AHL20(2)               ------ -->ANAC58  ----------->RAV1(1)                <---------GLK1(2)        <----------DOF2 --------->ARR11(3) -->ANAC58 --------->ANAC46       <-----------GT1             <---------AHL20(1)        --------->GLK1(2)   gacccattgatctacgacagaaaccaatacaacattttacacatgatcaaattcttgagcacaataaaatttctctttcaataactcgataatcttgaac  7084000                                                                  --------->LBD16                                                                 --------->ANAC46                                                     --------->MYB111(1)                                                     --------->MYB111(2)                                                     --------->MYB46(2)                                                     --------->MYB52(2)      <---------ALFIN1                               --------->MYB59    ----------->RAV1(1)                  <---------AtMYB61      --------->HSFB2a(2) ---->MYB83                           --------->ALFIN1 <---------MYB52(1)  <---------WRKY12 ---->MYB46(1)             ----------->GT1        ------------>MYB.PH3(2)<-----------HVH21<------ZmHOX2a(1) ->TEIL       ---------->DOF2   ---------->DOF2  <---------ZAT6 <---------HSFB2a(2)--------->GLK1(2)   ctatcccaacacattataaagagctaattcagtgaaaagagtggaggtagagagttagttagtttacccgaagacggtcagagagaatcgaaggagtgat  7084100                                          <----------DOF2                                          <---------WOX13(1)                                         <---------ANAC58                                         <---------ANAC46                         <----------DOF2                                         <---------ANAC58                        <---------ANAC58                           <---------ANAC58                                 <----------DOF2             --------->At4g35610    --------->MYB52(2)               <---------DAG2    <----------DOF2           <------ZmHOX2a(1)      <---------MYB52(1)           <xxxxxxxxxxxxxxxxsmallRNA(le3) <------       --------->TOE1(2)   <---------ANAC58    ------>ZmHOX2a(2)  <-----------GT1<---------ANAC58   caatttgaacttaggagcttcagacataagcttgtcgtaagttgcttgatcgaacagaaccatgttgttcaccttctccttttgctttcctttgctccac  7084200                                             --------->ANAC46                       --------->ANAC58   ------>MYB46(1)                       <---------ANAC55(2)-------->P ------>MYB46(1)                       ----------->GT1    ------>MYB83 <---------ATHB12                       --------->ANAC58   --------->MYB52(1)                          --------->DAG2                      <-----------------------TaNAC69(2)                             ---------->DOF2           --------->ANAC58               ----------->RAV1(1)              <---------ANAC55(2)        <---------ATHB12--------->TOE2(3)--------->ANAC46---------->DOF2   ----------->GT1--------->ATHB12 <-------GAMYB--------->CCA1(2)         --------->MYB46(3)                 --------->ANAC58         - ---ALFIN1 --------->ANAC58   --------->AHL20(2)     ------>MYB83          --------->ANAC58    <-----   ttctgttgaaatcaagaaatgagaaacgtaaataaaacaaaacccaccagaaaccaaatcaaagaaacttactgatcaagtaaaaaaaaaagtgattgtg  7084300                                           <---------ANAC58                                           <---------ANAC58                                           <---------ANAC46                                     <---------ARR14(2)                                     --------->ARR14(2)                                   --------->LBD16                                 <------NtERF2                      <----------DOF2   <---------ANAC46          --------->HSFB2a(1)    <---------LBD16              --------->ALFIN1       <---------ANAC46          <---------HSFB2a(1)   --------->MYB52(1)           ----------------------->TaNAC69(2)          --------->HSFC1(2)    ------>NtERF2               --------->MYB55(2)       <---------ANAC58          <---------HSFC1(2)   <---------ALFIN1             <---------MYB46(3)       <---------ANAC58         <---------ARR11(3)    --------->DEAR3(1)        <------MYB46(1)            ------>NtERF2        <------ZmHOX2a(1)    --------->LBD16 <------NtERF2 --------->ALFIN1      <---------ANAC58    ---------->DOF2          ------>NtERF2<<<<<<<<<E2Fc --------->ALFIN1         <---------ANAC58 <------MYB46(1)        <----------DOF2   <---------LBD16<------MYB83           <-----------RAV1(1) <------MYB83         <---------At4g35610 <<<<<<<<<E2Fd <---------AtMYB61  ------>ZmHOX2a(1)   <----- -------->MYB59<----------DOF2--------->MYB46(3)      <------ZmHOX2a(1) ---------->ID1<---------LBD16 ----YAB1--------->ARR11(3) --------->ANAC46--------->LBD16<---------AtMYB61  <----------DOF2 -------   atttggtaaaggaccttctttttctgctttccgccaccggatttggcgggtttagaggatggtggtgggactttgtccttctttggtgcctggaatcagt  7084400                                                                                            ---------                                               --------->LBD16                     <---------YAB1                                              --------->ANAC46                   <---------AHL20(2)                                            ------>MYB46(1)                 --------->AHL20(1)                --------->GLK1(2)           ------>MYB83            --------->ANAC58   <---------AHL20(2)               <---------GLK1(1)          ------->GAMYB             --------->ANAC46  <---------YAB1            --------->ANAC58             --------->MYB46(3)         --------->ANAC58 <---------AHL20(2)            --------->ANAC55(1)         -------->P    <---------MYB59       <---------ARR11(3)        <---------ALFIN1 <----------ID1<-----------GT1--------->TOE2(3)     --------->ARR11(3)      --------->AtMYB61  ----------->HVH21--------->AtMYB61     ----------->TBP <---------YAB1 ------HVH21--------->ANAC46           --------->WOX13(1)    --------->TOE2(3) <---------AHL20(2)<--- -->WOX13(1)--------->ANAC58     --------->AHL20(2)  <---------ANAC55(2)    <---------AHL20(1)   <---   cagagaaaccacacacgaaatctgtatgcgacgaataaaatcaaccatccgaaatacctaaaacctatataagccaaatatttttatttttattttggta  7084500                                                               ----------->GT1                                                             <------------CBF                                                           <---------AHL20(2)                                                    <---------AHL20(2)                 <---------AHL20(2)                                                   --------->AHL20(2)                  <---------AHL20(1)                                                   <---------ARR11(3)                  --------->AHL20(1)                                                   <---------AHL20(2)                 --------->YAB1                                                   --------->ARR11(3)                <---------YAB1                                                   <---------AHL20(1)     <----------DOF2                        --------->ARR11(3)         --------->AHL20(1)  <---------AHL20(2)    <-------  <---------MYB46(3)  <------MYB46(1)      ----------->GT1--------->AHL20(2)      <---------AHL20(2) >MYB59    <---------AHL20(2)        <---------AHL20(2)   <---------AHL20(2)      --------->AHL20(2)- ------TOE2(3)        <------MYB83  --------->AHL20(2)<---------AHL20(2)  <---------DAG2    --------- ------TOE1(3)      <--------P ------------>CBF   --------->AHL20(2)   <-----------GT1--------->AHL20(2)   aggtttgttcgatttttttttggtagggtcttgttcaattttatgtagtaaaatatatttttaaattgtatattaactttatgttttattatattccaaa  7084600                                                                           <---------TGA1a                                                                           --------->O2                                                                           <---------O2                                                                 <---------YAB1                     -                         --------->ICU4                       --------->AHL20(2)                    -                    ----------->GT1                       --------->ICU4   --------->TGA1a          -             --------->YAB1   --------->AHL20(2)     ----------->GT1<---------YAB1            -------            <---------YAB1    <---------AHL20(2)   ==================================bZIP_DOF ------- --------AGL15   <---------AHL20(2)                ---------->DOF2<---------ICU4              ------- ---------->GT1 --------->AHL20(2)            ----------->GT1 <---------AHL20(2)         <---------MYB52(1) -------->AGL1  <---------AHL20(2)<---------AHL20(2)--------->DAG2--------->YAB1        --------->TOE2(3)   ctgggttataacttataattaaatgtaaaaatttaaatatttgtgaaatggagaaaagtaaaaatttatcatgacagacgtcttcatttcccttaatctt  7084700                --------->RVE1(1)               --------->ARR11(3) <---------------AGL15                                                    <---------AHL20(2) -------->YAB1 --------->GLK1(2)             --------->ARR11(3)           --------->AHL20(2) -------->TOE1(3)             <---------AHL20(2)            <---------YAB1--------->YAB1 -------->TOE2(3)   <----------DOF2  <-----------TBP<----------DOF2    --------->YAB1              -- -->YAB1----------->GT1  ------------>CBF    <---------ARR11(3)     --------->YAB1             <----- -->TOE2(3)    <---------ARR11(3)<<<<<<<<<GATA-1    --------->TOE2(3)--------->AHL20(2)   ----------- -->TOE1(3)   --------->RVE1(1) <-----------GT1  <-----------GT1  --------->AHL20(2) --------->ATHB12   aatcttaacatagtaaaaatctctttcttcaatttatctatatataagattttactttagttatgttttaaaataataatatactcttaattgggttata  7084800                    ---------->DOF2                      <---------AHL20(2)          --------->AHL20(2)            <---------AHL20(2)                          --------->AHL20(1)           <---------AHL20(2)           <---------AHL20(1)           <---------YAB1<---------AHL20(1)          <----------DOF2    --------->GLK1(1)      --------->At4g35610<---------YAB1        --------->AHL20(2) --------->GT1<---------AHL20(2)       --------->TOE2(3)<---------AHL20(1)   ------>ZmHOX2a(1) ----YAB1  --------->AHL20(1)        <-----------ARR10--------->AHL20(1)    --------->TOE1(3) >GT1      <---------ARR11(3)       <---------CCA1(2)--------->AHL20(2)     --------->TOE2(3)   aatgtgaaatctatatatttttaaaagggagcaaaatcaaatcttattgtgataaatatatatttcttcattatatatccttaacttttaattcttcagt  7084900  Previous    Next  AGI:  At2g16365.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G16300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47597.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 7081444    to: 7086601    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g16360.1    Description:  40S ribosomal protein S25 (RPS25A). Identical to 40S ribosomal protein S25-1 (RPS25A) [Arabidopsis Thaliana] (GB:Q9SIW5); similar to 40S ribosomal protein S25, putative [Arabidopsis thaliana] (TAIR:AT4G34555.1); similar to unknown [Picea sitchensis] (GB:ABK21138.1); similar to unknown [Picea sitchensis] (GB:ABK23839.1); contains InterPro domain Ribosomal protein S25 (InterPro:IPR004977) Range:  from: 7083795    to: 7084448    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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