Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ------>ZmHOX2a(2)                 --------->AHL20(2)  <---------GLK1(1)                <---------YAB1       <------ZmHOX2a(2)                                         ------                --------->ICU4      --------->ARR11(3)    <---------DDF1                <-----------GT1      --------->YAB1 <---------AHL20(2)      <----------DOF2         <---------ATHB12   ---------->ID1 -->ARR14(2) <---------YAB1         <---------ARR11(3)  --------->DEAR3(2)   --------->ARR11(3)------ -AHL20(2) ----------->GT1      <-----------GT1  <---------TOE2(3)   <---------YAB1    <-----------GT1   tgcttgaagcatattgttattatttagttggatttgacgatctctgactttaatgtataccgacataccctatgatttagatgttgatttttcccattct  6956800                                                                  --------->AHL20(2)                                                                 <---------YAB1                                                               --------->YAB1                                                      <---------AHL20(2)                                                      <---------ICU4                                                  <---------YAB1--------->TOE2(3)                 >>>                                       <---------ICU4--------->ICU4--------->AHL20(2)            ----                                       <---------AHL20(2)   --------->YAB1                   <-------                                       --------->AHL20(2)  <---------YAB1               <---------At4g35610 <---------AHL20(1)                    --------->ATHB12  <---------ICU4                 --------->At4g35610 --------->ARR11(3)            <---------CCA1(2)----------->GT1<--------HAHB4           <---------ZAT2 <---------ARR11(3)     --------->YAB1 --------->ATHB51 --------->ICU4                  ----------->RAV1(2) --->TOE2(3)            --------->AtMYB61    <---------AtLEC2 <---------YAB1            --------->ZAT2 --->YAB1         --------->GLK1(2)   --------->ICU4 --------->AHL20(2) --------->AHL20(2)   <-------   taatatatccatgttaagagattccaccataacatatctaattatttgcattgtaataaatattatcattaaaaaaaaatacaactggacagctggctcg  6956900                                                                                 ------->MYC3                                                                                 <-------MYC3                                                                                <---------O2                                                                                --------->O2                                                                            <---------DDF1                                                                           <---------bZIP60(1)                                                                           <<<<<<<<<<bZIP23        <---------ANAC58                                                   <---------ETT(2)        <---------ANAC58                                                   --------->ETT(2) >>>>>>>>>>>>>>LFY     --------->AHL20(2)                  --------->ALFIN1<<<<<<<<<<bZIP19     <---- ------>ID1         --------->WOX13(1)                <-------TEIL        <------NtERF2   --------->ARR11(3) --ANAC58   <---------ANAC58                  --------->YAB1          <------MYB83        <---------ARR11(3) --ANAC58   <---------ANAC58     ---------->DOF2   <---------HSFB2a(1)<------MYB46(1)   <---------TOE2(3)   tcccattgtttcttacgtccaccaattacatttgttaaagcaaacttattagaacgttcatgtgtgagaagttggtgtcgacatgtgtctaaggtctatg  6957000                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                 ====                                                                                                 >>>>                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <<<<                                                                                                 ----                                                                                                 ----                                                                                               <-----                                                                                            =========                                                                                           ==========                                                          <---------ARR11(3)               <---------                                                         --------->RVE1(1)               --------->ARR14(2)                                         --------->TOE2(3)--------->ARR11(3)             <---------ICU4                                    <---------YAB1 >>>>>>>>>GATA-1                    --------->YAB1             --------------->AGL15 <---------ARR11(3)--------->AHL20(2)              <---------YAB1--  <---------GLK1(1)         --------->ZAT14  <---------YAB1                  <-----------GT1------->GAMYB  --------->GLK1(1) <---------ANAC55(2) ----------->GT1  --------->CCA1(1) --------->AHL20(2)<------- -------HVH21<---------------AGL15 <<<<<<<<<<GT-1----------->GT1           <---------AHL20(2)<-------   tcagaaatcggattagcttattaagtaaactatactatatcattgttaatatagataaaatatctagttcgtccaaattaaactattttcataactgcca  6957100      <---------DOF5.7(2)     --------->ARR14(2)     <---------ARR14(2)    --------->DOF5.7(2)  <---------ANAC46  <---------ANAC58  <---------ANAC58 <------NtERF2 ---->MYC3 -----MYC3 -----MYC4 ---->MYC4 ---->PIF5 -----PIF5 ---->MYC2 -----MYC2 =============================================bZIP_DOF >>>>>>HY5 ------bZIP60(2) ------O2 ----->TGA1a ------TGA1a ----->PIF3(3) ------PIF3(3) <<<<<<HY5 ----->O2 ----->bZIP60(2) ----ALFIN1------->TEIL            <----------DOF2 ======MYC_MYB                  <---------AHL20(1) ======MYC_MYB            ----------->GT1                             *TSS ---AtMYB77<---------ARR14(2)   --------->ARR11(3)            --------->YAB1 ------->ALFIN1         <---------ANAC46    ---------->DOF2  <-------TEIL          <-----------GT1 ----HVH21 --------->ARR14(2)   <---------ARR11(3)    ----------->RAV1(1)         --------->ZAT14 ---------PIF3(2)   <-----------HVH21   <-----------GT1 <---------ALFIN1         <----------DOF2   cgtggcgtaaacgtatccatcgagtcacttgtaatatctttataaccaaagtcttccaacacattcatcaccatctatctactctttactctcttctctt  6957200                                                                                              -------            --------->YAB1           ---------->DOF2                                          <------        -------->ATHB1            --------->ANAC58                                         ------>ZmHOX2a(2)        --------->AHL20(2)        --------->ANAC58                                      --------->ATHB12        --------->ATHB51      ------>NtERF2                    <---------KAN4(2)       --------->ICU4       <---------ATHB51       --------->LBD16                =====================================HOX2a_HOX2a       --------->ICU4        --------->ANAC46                <------ZmHOX2a(1)         <---------YAB1       <---------ATHB12      <---------ETT(1)              <---------TOE2(3)    ---------->DOF2<-----     --------->WOX13(1)     <---------LBD16           <---------MYB46(3)  <-----------------AGL1-----   ctcacatcaattattcatagttctctcttctccggcaagaaaagatgcctatgaagtcgttgaggaatgaccatggaacccttaaggccatgatcggatc  6957300           --------->ZAT18           <---------ZAT18              <---------ALFIN1                                       <-----         <---------At4g35610            --------->ANAC46                                       <-----         --------->At4g35610          <---------ALFIN1                                         <-----         --------->ZAT2           --------->STY1(2) --------->ANAC58                        <--------P       ------->GAMYB             ------>MYB83       --------->ANAC58                       <---------ANAC58 -->ARR14(2)                     ------>MYB46(1)  --------->ZAT6                           <---------ANAC58 ---ARR14(2)                 ------->TEIL --------->ANAC46                         ------>ZmHOX2a(1) -ZmHOX2a(2)          --------->At4g35610 --------->ANAC58                         --------->HSFB2a(2) ->ZmHOX2a(2)         <---------At4g35610 --------->ANAC58         <----------DOF2 <---------HSFB2a(2)   cgatttcaacgagctcactatcgctgctaagaacctagctacacacgccttcacactcactggtttaggctttggtacctctgtcctcgaatgggttgct  6957400          --------->AtLEC2       <------NtERF2      <---------RAP2.6(3)      ------>NtERF2     <---------ATERF1(2)     --------->RAP2.3(3)     --------->DREB2C(2)     --------->RAP2.3(2)     --------->ATERF1(2)     --------->DEAR3(1)     --------->RAP2.6(2)     --------->ANAC46     --------->RRTF1(2)     --------->RRTF1(3)    --------->ORA47(2)    --------->RAP2.3(1)                                         --------->ARR11(3)              -----    --------->ERF1                                     <---------ANAC58                         <----   <---------ATERF1(1)                                 <---------ANAC58                 <---------ICU4  ------->GAMYB                                     <---------MYB52(1)           <---------TOE2(3) --------->MYB46(3)                            --------->ARR14(2) ------>ZmHOX2a(2)     <---------AHL20(2) ----ANAC58                                 ------>ZmHOX2a(1)   <---------ARR11(3)----------->GT1  -- ----ANAC46    --------->MYB46(3)           =============================HOX2a_HOX2a   --------->ICU4 ----ANAC58  <-----------GT1           <----------DOF2 <---------ANAC46  <---------TOE2(3)      <----   tcaatcgccgccatgtaaccattctctctgtttctatgtctctttcctctatccgtttcttgtgttgatcttgatgaggttttgatgtaataaatgcaga  6957500       <-----------RAV1(1)                 --------->TGA1a     <------MYB83                          --------->ANAC46     <------MYB46(1)                       --------->bZIP60(1)    <---------AtMYB61               --------->KAN4(2)                                     <----------DOF2   <--------P                      <----------TaMYB80      =====================================HOX2a_HOX2a   ==================================================MYC_MYB                             ------>ZmHOX2a(2) <-----------RAV1(1)              <---------ARR14(2)       ------>ZmHOX2a(1)           --------->ARR11(3) ---->ARR14(2)                    --------->ARR14(2)      <---------ANAC58             <---------ARR11(3) -----GLK1(2)                     <---------KAN4(2)       <---------ANAC58         <---------ANAC58 ------->ANAC55(2) --------->MYB46(3)      <---------bZIP60(1)--------->REM1(1)    <---------ANAC58 -----ARR14(2) ------>ZmHOX2a(2)  ---------->TaMYB80<---------YAB1                 --------->TOE2(3)   tacttgttggtgttggatcgaaccaattggaagacgaatatgctcacatcacttctcattccttacatcttcttcagtcttccttccttgatctttggta  6957600                                              --------->ICU4                             <---------DAG2 --------->YAB1                   --------->ANAC58         <--------HAHB4                 ---------->DOF2           <---------YAB1             ----------->RAV1(1)       --------->ANAC55(2)  --------->TOE1(3)                    ----          --------->ZAT6     <----------DOF2<---------ICU4  --------->TOE2(3)            <------ZmHOX2a(1)  <---------TOE1(3)--------->ANAC58<----------DOF2     ------>ZmHOX2a(1)         ----------->HVH21   ttttcaggtataacacaacaaaagccagagactttttctttacttatcattatgttcctaaaccctaacttgtgtctgaaactttgacagaggagaaatt  6957700  Previous    Next  AGI:  At2g15970.1    Description:  COR413-PM1 (cold regulated 413 plasma membrane 1). similar to stress-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G37220.1); similar to cold regulated 413 plasma membrane 1 [Brassica rapa] (GB:ABV89655.1); contains InterPro domain Cold acclimation WCOR413 (InterPro:IPR008892) Range:  from: 6957170    to: 6958274    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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