Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <-----------HVH21                                                                                   <-----------TGA1                                                                                  <---------O2                                                                                  <---------TGA1a                                                                                  --------->TGA1a                                                                                  --------->O2                                                                                  ===================                                                                                  --------->TGA2(1)                                                                                  <---------TGA2(1)                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                             ------->GAMYB                                                                             ===============MYC_MYB                                                                             --------->ANAC46                                                                          <---------ALFIN1                                                                         <---------ALFIN1                                                                       ==========================RAV                                                                       ----------->RAV1(1)<------ZmHOX2a(2)                                                                     --------->LBD16     <---------ARR11(3)                                                                    --------->ANAC46     --------->ARR11(3)                                                                    --------->DEAR3(1)   --------->ARR14(2)                                                  ----------->RAV1(1)------>NtERF2--------->bZIP60(2)                                            --------->ARR14(2)      --------->ANAC58 <-----------RAV1(2)                                    <---------ANAC58                --------->ANAC58--------->TGA2(2)                                    <---------ANAC58  --------->AtLEC2 <---------ALFIN1 <------ZmHOX2a(1)                                  --------->ZAT18--------->ANAC46  <---------LBD16<---------bZIP60(1)                            --------->At5g28300 --------->LBD16  ===========================MYC_MYB      <-----------HVH21     <---------MYB52(1) --------->ANAC46  ------->GAMYB  ------>NtERF2   --------->At4g35610     --------->LBD16  <---------ARR14(2)  --------->MYB46(3)--------->bZIP60(1)  <---------ARR11(3)       ----------->GT1 --------->GLK1(1)   =============================MYC_MYB --------->REM1(1)        --------->ATERF1(2) <---------LBD16  -------->P--------->MYB46(3) --------->RAV1(1)      <---------At4g35610<---------GLK1(1)<---------ATHB12--------->MYB46(3)      <   gcaacatctgtcatcaaaccaagttcagccggtaaatgccctgcgatatccgcaccattcaaatcaacccccgccacaaccgcgacgtcaggatcatcaa  6927000                                                          <---------ANAC46                                 --------->TGA1a         --------->ALFIN1             <---------DAG2                      ---------->DOF2                    <---------AtMYB61            <----------DOF2                      --------->ARR14(2)    --------->ANAC58----------->GT1          <---------DAG2            --------->ZAT14      <---------TGA1a       <-----------RAV1(1)         ------>NtERF2        --------->ANAC58     <---------ALFIN1          ------>ZmHOX2a(1)          --------->DEAR3(1)        --------->ANAC58   ----------->RAV1(1)       <---------ANAC58           XXXXXXXXXXXXXXXXXXXX>MIR408   <------NtERF2      =====================bZIP_DOF  <---------ANAC58 <---------ARR14(2)  --------->LBD16   --------->LBD16         --------->AtLEC2<---------ANAC46   --------->ANAC46 <---- ================================bZIP_DOF   --------->ANAC58<---------ZAT6     <-----------GT1  <---- ---------LBD16<---------ALFIN1<---------ALFIN1      <---------ANAC46 --------->ARR14(2)        <----   gagccggggcacagaacacacccgtatagccacacacatgagggccatgccagtttcctgtggtgttaaacgggtctgaatacaccgcctttttccaggc  6927100                                                       ------->TEIL                                 -                                                       -------->P                             -------                                                    ================================HOX2a_HOX2a  <---                                                    <------ZmHOX2a(2)              <-----------GT1 <-          <-----------GT1                          --------->ARR11(3)  --------->YAB1         -------         <---------ARR14(2)                        <---------ARR11(3) <---------YAB1  ---------------         --------->ARR14(2)                  --------->TOE1(3)       <---------ARR11(3)      <------- -----ANAC46                                 --------->TOE2(3)       --------->ARR11(3)      <------- -----ANAC58                                 <---------DAG2    --------->ANAC46   --------->ZAT18---- -----ANAC58--------->ANAC46            <-----------HVH21--------->TOE2(3)   <------ZmHOX2a(1)<------   ttggagagcaatatacgctctcttaagcctatggtttgcaaatgtcaccttaagatcaacctcatactcaatatcatcaggaagttcaccattttcaggt  6927200         <-----------RAV1(1)       <---------At4g35610 -------->TOE2(3) -->ANAC55(2) ------DOF5.7(2)       --------->AHL20(2)                                        ---------->DOF2 --------bZIP60(1)     <---------AHL20(2)               ----------->RAV1(1)   >>>>>>>>>TBF1 -->ANAC46            --------->ICU4                    --------->MYB52(1) >>>>>>>>>TBF1 >AGL15--------->At4g35610                      ----------->GT1      ------------------------>ANAC81 --TOE2(3)            <---------ATHB12       <---------ANAC58        >>>>>>>>>TBF1           -------- --TOE1(3)<-----------HVH21  ------->TEIL    <---------ANAC58      ------------------------>ANAC81 ----->MYB52(1)   <---------ZAT18           <---------MYB46(3)  ------------------------>ANAC81 ---At4g35610     --------->ZAT14         <-----------HVH21------->GAMYB>>>>>>>>>TBF1 ---------->DOF2   aacgtcaagagctgtcgctgtgcaataaatgaaacttctgcatcggtgagtgctaaaacaacagaagagaagaagaagaagaagaaagaaaagaataaga  6927300                                             <---------ANAC58           --------->MYB52(1)--------->ALFIN1                                             <---------ANAC58        --------->ANAC58   --------->CCA1(2)          ---------->DOF2                    <---------ANAC46        --------->ANAC46  <---------ARR14(2)    --------->At4g35610                      <---------bZIP60(2)     --------->ANAC58  --------->ARR11(3)    <---------At4g35610                 <---------ICU4    --------->TOE1(2)            --------->ARR11(1) <------ZmHOX2a(1)  ---------->DOF2     --------->YAB1    --------->TOE2(3)     <---------ANAC46 ->YAB1--------->At4g35610     <---------TOE2(3)          --------->TOE2(2)    <---------At4g35610   agaggaagcagccaaagggcgagaaagaaaatggaggtttagtcatgacttggaacaaaaccttggaaaatacccaagggctgcttatagatatggggca  6927400                                                                                      ---------------                                    --------->YAB1                          --------->ARR11(3)                               <---------YAB1                          ------>MYB83  <---------------                               --------->ICU4                          ------>MYB46(1)<--------------                          ----------->GT1                            --------->MYB46(3)                       --------->MYB52(1)      ------------>CBF<---------AtLEC2   ---------->ID1                      ---------->DOF2  <---------ICU4      <----------DOF2  <---------ARR11(3)   --------->DAG2    --------->AtMYB61 --------->YAB1     <---------ICU4    <-----------ARR10 ---------->DOF2  <----------ID1  <---------YAB1     <-----------GT1 <---------MYB46(2)   tagaaaaggtttcgatgaaaacaccaaagggttattattaataatgtcaaacaattttcatctttgcatcaccaaacaaatcttttccctatatttagaa  6927500                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                      --------->ANAC46                                   --------->LBD16                               <-----------GT1<---- >AGL15            --------->ARR11(3)        --------->YAB1                    <---------MYB52(2)---- --AGL3            <---------ARR11(3)    --------->MYB46(3)                   ------>MYB46(1)-------- -AGL15    <----------DOF2       <---------LBD16             <---------GLK1(1)------>MYB83   <-------   aactcttgttttcctttcaaagatttagcttcacatccggagaacaaacatcatcaagaatagaaatctcttcgtaaaccaaataaccacgtagtactat  6927600              --------->YAB1                           <---------ALFIN1         ------------>CBF                              ------->GAMYB       --------->ANAC46                               --------->MYB46(3)       --------->ANAC58                            --------->MYB46(3)       --------->ANAC58                          --------->YAB1 ---------AGL15                             ------------>CBF -------->AGL15                            --------->ANAC46 ----------AGL3                            --------->ANAC58                     --------->ANAC55(2) ----------AGL2                            --------->ANAC58                     <---------ANAC55(2) -----YAB1    --------->AHL20(2)          --------->WOX13(1)                ------->TEIL            - ----->YAB1  ----------->TBP             ---------->DOF2                 --------->ANAC55(2)        < --------->AGL3                  --------->HSFB2a(2) -------->P          <---------ANAC55(2)   ------ ----------AGL1                  <---------HSFB2a(2)------->GAMYB  ------------>CBF      ---------->DOF2   aataggcacacgacaataaaaacaaactcaacattcgcgaacatcaagcaataacaaccacatttctatggcaatatgtatcacatattagcaaagagac  6927700                             --------->YAB1                             <--------HAHB4                 --------->ANAC58     --------->AHL20(2)         ---------->DOF2     <---------ICU4       ------>ZmHOX2a(2)    <---------YAB1     <---------ARR11(3)   --------->YAB1         --------->ANAC58     --------->ARR11(3)<---------ARR11(3)        --------->ANAC58     <---------SPL7 -------->AHL20(1) ------->GAMYB--------->AHL20(2)                  <---------------AtSPL3 ---------ARR11(3)--------->MYB46(3)  <---------AHL20(2)       ---------->DOF2              <-------- ------>CBF      --------->ANAC58 <---------ANAC55(2)     <----------DOF2 <---------ANAC46 <-------GAMYB   aatatatgatctaaagcacaaccaagaactataattacatataaatgtgataagaaacaactttctaaaggtagtaccgtagtaatccacttccgttatc  6927800                                                  --------->ANAC58                                        --------->YAB1                                     --------------->AGL15                                     <---------------AGL15                                    <-----------------AGL3                                    <------                                    ----------------->AGL3                            --------->ANAC46                                    <-----------------AGL2                            --------->ANAC58                                    <-----------------AGL1                            --------->ANAC58      --------->GLK1(1) <---------ARR14(2)        --------->ANAC46                   --------->WOX13(1)      <---------GLK1(1) --------->ARR14(2)        --------->ANAC58     --------->ATHB12     --------- -MYB52(1)           --------->AtMYB61 <---------YAB1   --------->AHL20(2)          ---------->DOF2   aagaacagaaatctcttcgtaaaccaaaaccgcgtagtactataataggcacacgacattaaaaacaaactcaacattggcgaacatcaagcaataaaac  6927900  Previous    Next  AGI:  At2g15880.1    Description:  leucine-rich repeat family protein / extensin family protein. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47727.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 6925121    to: 6927401    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g15890.1    Description:  MEE14 (maternal effect embryo arrest 14). similar to unnamed protein product [Vitis vinifera] (GB:CAO47726.1) Range:  from: 6927451    to: 6929107    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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