Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <----------DOF2                                   ----------->RAV1(2)                              --------------------->WRI1                      --------->ANAC58                             <---------ANAC58                                 ------->GAMYB                             <---------ANAC58                                 --------->ANAC58                   --------->ARR11(3)           <----------DOF2        --------->ZAT18                   <---------ARR11(3)        ------>NtERF2             <---------ZAT18                  --------->RVE1(1)         --------->DREB2C(2)    --------------->AtSPL8 --->ARR14(2)     --------->CCA1(1)         --------->DEAR3(1)     <---------------AtSPL8   atgcttctccatctccctaaatatctccatagctttcgcaaaatcgccgactttcgaataagcttctattttgtacacaaacgcctgagaaggtatacca  6897100                        ------->PIF5                        <-------PIF5                       <---------TGA1a                       --------->bZIP60(2)                       --------->ANAC58                       ==========================================bZIP_DOF                       --------->TGA1a                       --------->ANAC58         --------->ANAC46         --------->ANAC58                             <----------DOF2         --------->ANAC58                       ------>MYB46(1)        --------->WOX13(1)  ------>ZmHOX2a(1)   ------>MYB83      <---------ATHB12 <---------O2           --------->AtMYB61                 --------->AtMYB61  --  <---------------AGL15--------->O2           --------->DEAR3(1)        <-----------GT1            -- >>>>>>>>>RAP2.2  --------->ANAC46         <---------ALFIN1             --------->MYB52(1)       ---- --------->TOE2(3)--------->ANAC58         --------->ANAC46           <---------MYB52(2)   <--------- --------->YAB1   --------->ANAC58       <---------ALFIN1            --------->ANAC46    <----------DOF2   caatctaaatcaagcaattcaagccacgtcctctcaacttcttccacacctccctcctttgcataagctctaagtaacgataccacaacttctttactct  6897200                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                     <<<<<<<<<GATA-2                                                                                     <<<<<<<<<GATA-4                                                                                     <<<<<<<<<GATA-3                                                                                     <<<<<<<<<GATA-1                                                                                   --------->WOX13(1)                                                                                 ====================    --------->MYB52(1)                     ------>MYB46(1)                       <------ZmHOX2a(2) ---->ZmHOX2a(1)                           ------>MYB83                         --------->AGP1  ----- ------->LBD16                             -------->P                           <---------ARR11(3) ------->RAV1(2)                          ------>ZmHOX2a(1)                    --------->At4g35610 --GT1            <---------CCA1(2)   <-----------GT1       <---------ICU4 ------>NtERF2        -----   cctgaaaaccggccttcttcatctcttctcttagagagtttatcctacctatatcaacttcatcttgacaactatgcagccagatcaatccactataaat  6897300           ---------->DOF2         --------->TOE2(3)         --------->TOE1(3)       ------->TEIL                                                      <---------ARR14(2)  ----------->RAV1(2)   <-----------GT1                                  --------->ARR14(2) ------>ZmHOX2a(1)    <-----------HVH21                    <---------At4g35610 ----->ARR11(3)      <---------MYB46(3)                    --------->At4g35610 ------ARR11(3)    <-------GAMYB                      <---------ANAC58   --------->GLK1(2) --------GT1    <---------LBD16                   <---------ANAC58   --------->YAB1 =======HOX2a_HOX2a<---------MYB52(1)             <---------ANAC58--------->WOX13(1)          ------- ---->CCA1(1)--------->ANAC58       ---------->DOF2   <---------ANAC58  <---------GLK1(2)   --------- ---->RVE1(1)--------->ANAC58     <---------YAB1 --------->ZAT2 <---------YAB1             -------->P   atccttctgaacctcaagcccggttgtcacaacattgtgaaagataaactctgcttgcttaagctgatcattcagaatccctccttgtttactaaccaaa  6897400                                                                          --------->ANAC58                                                                          --------->ANAC46                                                                          --------->ANAC58                                                                        <---------ALFIN1                                                                       <---------ZAT14                                                                       --------->ZAT14                                       --------->MYB46(3)    --------->YAB1      ---------->DOF2                <-----------GT1 --------->YAB1    <---------REM1(2) --->DOF2                       <---------ANAC46     <---------ICU4--------->ZAT6------>ZmHOX2a(1)<-- >MYB46(3)                  <---------LBD16         <---------ATHB12 --------->ANAC46          *TSS--   gctctaaacaaagagttatgcagactaagacgcggtttgtaacctccaagttgaatcattctattgtaaacactacacgcttcctcgagacaaccttcta  6897500                --------->ANAC55(1)                --------->ANAC55(2)                --------->ANAC46                <---------ANAC55(2)                --------->ANAC58                --------->ANAC58               <-------TEIL              --------->CCA1(2)              --------->ARR14(1)             --------->ARR11(1)                         --------->bZIP60(2)                      <---           ----------->ARR10                            --------->ANAC58                         <---   --------->ANAC58                                     --------->ANAC58                         <---   --------->ANAC58          --------->GLK1(2)        <---------ALFIN1                           ----   ----------------------->TaNAC69(2)       <-------TEIL--------->ANAC46                         <--- -------ZAT6 <---------ARR14(2)           <---------ARR14(2)                             --------->ETT(2) ------->YAB1--------->ARR14(2)           --------->ARR14(2) ------>ZmHOX2a(1)           <---------ETT(2)   ctgataagctacttagatacgcaactacaagaatatgaaatgtagattcacttggtacacgtccttgattcaaaacatcatcaaatacctctcgacattt  6897600         <---------MYB52(1)       <---------ANAC58                  --------->DOF5.7(2)       <---------ANAC58                  <---------MYB52(1)                 <-----------HVH21      --------------->AtSPL3          ---------->ID1                    <---------MYB52(1)    <-----------GT1                <-------TEIL             <---------MYB52(1) ------ANAC58               <---------At4g35610           --------------->AtSPL3 ------ANAC46               <---------ZAT2                --------------->AtSPL8                    - ------ANAC55(2)            --------->At4g35610--------->ANAC46        <-------GAMYB                < ------->GT1<----------DOF2 --------->ZAT2     --------->ANAC58       <-----------RAV1(1)       ----- ------ANAC58    --------->LBD16<---------ZAT2 --------->ANAC58    --------->GLK1(2)        ---------   cgtaaatttccgttctttccccaagtattcagctagcttcgtcgttaacccgaaatcaaaccggtaccaattctgttgtgtcatccatctatacacctaa  6897700                                                                      <---------LBD16                                                                      ----------->RAV1(2)                                                                   <-----------GT1          --------- <------ZmHOX2a(2)                                           <---------TOE1(3)      <---------ANAC58 -------->ARR11(3)                       --------->DAG2      <---------TOE2(3)      <---------ANAC58 ---------ARR11(3)                      ---------->DOF2   <---------REM1(1)--------->ARR14(2)  ------ ----->DOF2                          --------->YAB1   <---------WOX13(1)   <---------ARR14(2)  <----- >ANAC46                     --------->GLK1(1)      --------->ATHB12<---------At5g28300     ---------   aagatcaaaactttcaatacaaattcaacacaaatccattgataaagcttctaaagattgatgaaggttttaccctgaatccagtttcgttctcacgaat  6897800                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                --------->ANAC58                               ------>ZmHOX2a(1)                                --------->ANAC58 >ANAC58                   <---------ZAT18                                    --------->MYB52(1) --->ARR14(2)             <---------ANAC58        <---------At4g35610       <-----------TGA1 ----ARR14(2)             <---------ANAC58   <---------CCA1(2)              <-----------HVH21   ----- >ANAC58         <---------REM1(1)      ------->TEIL            <---------GLK1(2)   <---------DAG2   tcgcatacaatgaacagagatgtaagtagcgtcctcttgacgaacccatttcttctgagcattcaagagtctcacaagcgtcacggccttatgcgttgga  6897900                                          --------->ANAC58                                          --------->ANAC46                                          --------->ANAC58               <---------STY1(2)        <-----------RAV1(2)               <---------ZAT2  ------>NtERF2               --------->STY1(2)<------NtERF2               --------->ZAT2 --------->RAP2.3(3)              --------->ANAC58--------->DEAR3(1)                                                  ---     <---------REM1(2)      <---------ATERF1(1)                                                  <---  <----------DOF2  <---------ZAT2      ------>ZmHOX2a(1)                                         ---- ---->ARR14(2)--------->ANAC58--------->RAP2.3(2)                                             -------   acctctttacacagccaagctagcttcgagcgtcgccattcctcaggcaactcttccaattctctaacttcaaactccgtctctattctacgagtcgcga  6898000  Previous    Next  AGI:  At2g15820.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G61990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47772.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885); contains InterPro domain LAGLIDADG DNA endonuclease; (InterPro:IPR004860) Range:  from: 6895622    to: 6897495    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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