Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       ---------->DOF2                                                                  --------->TOE2(3)                                       <---------ATHB12      <---------MYB52(2)                                       ----------->HVH21   --------->TOE2(3)                        ------>ZmHOX2a(2)              ---------->DOF2                      <---------ARR11(3)      ----------->HVH21   --------->TOE1(3)                      --------->ARR11(3)     <---------KAN4(2)--------->AtMYB61   ----------->RAV1(1)          <-----------GT1<----------DOF2  <---------YAB1<-----------GT1          <----------ID1   <--   taattgcaaatttaaccaagttttgatctttataaaccccaatgacgaatgacccattaaaccacaaaccctaaatcacagaaacaacaaatacccattt  6887600                               --------->CCA1(2)                              --------->ARR11(3)                           --------->ARR14(2)                              <---------ARR11(3)                           <---------ARR14(2)                          ---------->DOF2        --------->GLK1(2)  --------->REM1(1)         ------- ---------GT1    ----------->GT1        ---------->DOF2            <-------TEIL    <---------MYB59   ctacatttcatacataagagagtataaacaaagatatagagagaaagagagaaccttgtaatggagaggtacaccagtatttggacctaaacccttctca  6887700                            --------->ARR14(2)                            <----------DOF2                            <---------ARR14(2)                        <---------At4g35610                --------->HSFB2a(1)                <---------HSFB2a(1)  <-------TEIL  --------->HSFC1(2)  --------->ZAT14       --------->At4g35610                --------->YAB1   <---------At4g35610     -  <---------ZAT14--------->KAN4(2)                --------->DAG2         ---------->DOF2            - ---->HVH21     <---------HSFC1(2)               ---------->DOF2   ------>ZmHOX2a(1)     --------->YAB1   ccggtacagagtaatcgaaaattctcagcggttttgggaacaacatcatcgtaaagctcaataacaatccttccttcaagctcacctccaatgctaatgt  6887800                ------>MYB83              <---------MYB59              --------->AtMYB61              <---------MYB46(2)              <---------MYB111(1)           <---------WRKY18(1)                     <---------ANAC58          --------->WRKY38(1)                   <----------DOF2          --------->WRKY12          <<<<<<<<<TBF1  <---------ANAC58        <----------DOF2       <<<<<<<<<TBF1    <---------ANAC58         ----------->HVH21 -------->ANAC46------>MYB46(1)  <<<<<<<<<TBF1 <---------ANAC58      ------------------------>ANAC81 -------->AtLEC2-------->P <<<<<<<<<TBF1  ------>ZmHOX2a(1)      ---------->DOF2   ccatgaaacactttgacctacccatcttcttcttcttcttcttcctcttgctttcttgaaaccgaaacaaagacgagacagagagagagagagagagaga  6887900                                                                                *TSS                                                                          ---------->DOF2                                                                  <------ZmHOX2a(1)        ------->TEIL                                                               --------->At4g35610    ----------->GT1                                                           --------->GLK1(2)  <<<<<<<<<<<<<<<<<LFY       *TSS                                           ---------->DOF2 <----------ID1  <---------ANAC46   gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagaatcagaggaagagacaaagaacaatggtgtgaatctct  6888000                                                                                                 <---                                                                                                 <---                   ---------->DOF2                                                             ------           <---------ANAC58          <---------ANAC58                                          ------           <---------ANAC58          <---------ANAC58                                         <------       <---------ANAC58            ------>NtERF2                    ----------->RAV1(1)      --------       <---------ANAC58     <---------ETT(2)                       <----------ID1          --------->PCF2      --------->At4g35610   --------->ETT(2)         --------->ANAC46     --------->CCA1(2)<---------TCP15(1)      --------->HSFC1(2)  <---------ZAT14<---------CCA1(2)    --------->YAB1              <------ZmHOX2a(1)      <---------HSFC1(2)  --------->ZAT14---------->ID1    --------->GLK1(1)          --------->TOE1(2)   gtctcagtagcttccgtctctaaaagactgtagacggggacttgtctcttattaaacgcagaaatcaaaacgacagatagaagaaaaccctaggacccac  6888100                                                                 --------->At4g35610                                                            <-----------GT1                                                         <---------AHL20(2)                                                         <---------ICU4                                                        <---------AHL20(2)                                                     <---------AHL20(2)                                                    <---------AHL20(1)                                                    --------->AHL20(1)                                                    <---------AHL20(2)                                            --------->AHL20(2)<---------ANAC58                                            <---------AHL20(2)<---------ANAC58                                         <----------DOF2--------->AHL20(2)     ------>ZmHOX2a(1)               <-----------GT1--------->AHL20(2) ------DAG2                    <---------AHL20(2)<---------AHL20(2)                        --------->AHL20(2) -------DOF2                   --------->AHL20(2)--------->AHL20(2)                        <---------AHL20(2) >MYB83 ----------->RAV1(1)   <---------AHL20(2)<---------AHL20(1)          <---------AHL20(2)      < >MYB46(1)                 <---------AHL20(2)   --------->AHL20(2)          --------->AHL20(2) <----- ---ALFIN1             <----------DOF2<-----------GT1--------->AHL20(2) --------->ICU4     <---------AHL20(1) ->MYB46(3)        ---------->ID1<---------YAB1 <---------AHL20(2)  ------>NtERF2          --------->AHL20(1)   tttcttcctccaacaaattttgtctctttttatttatttttaacttttaattaatttatttattacttgctgccaaaattaaaaaataagaaatttatta  6888200                                            <---------ZAT18              --------->KAN4(2)             --------->ZAT18             --------->HSFB2a(1)           <-----------------AGL1             <---------HSFB2a(1)           ----------------->AGL1        <---------HSFB2a(2)             <---------WOX13(1)       --------->YAB1        --------->HSFB2a(2)           <---------MYB46(3)        --------->AHL20(2)  <-----------GT1       <---------ANAC46            <------MYB46(1)         --------->ANAC46     <---------YAB1      < ---------->ID1                    <------MYB83           <---------ZAT14<------MYB46(1)          <-- -----------HVH21 <---------HSFB2a(2) --------->ATHB12    --------->ZAT14<------MYB83       --------- ------GT1  <-------TEIL          --------->MYB111(1)--------->ZAT18<---------AHL20(2) <----------DOF2   ctcgtcccttcgggtacattccataagagtggatagtaggtgattgcccactatggccactacacaataaatatttggttttattatttctttttcttaa  6888300          <---------AHL20(2)         <---------AHL20(1)         <---------AHL20(2)     --------->AHL20(2)   <---------YAB1                      ------>MYB83     <---------AHL20(2)<---------AHL20(2)                     ------>MYB46(1)            --------->ANAC58    --------->AHL20(2) <---------YAB1          --------->GLK1(2)                         --------->ANAC46 <---------AHL20(2) --------->AHL20(1)         --------->ARR11(3)                 <----------DOF2 --------->AHL20(2) <---------AHL20(1)         <---------ARR11(3)       <---------AHL20(2)<---------MYB59 ---------AHL20(2)  --------->AHL20(2)  ----------->GT1     <---------MYB59       --------->TOE2(3) -------ICU4        <---------ARR11(3)  <----------ID1     --------->ANAC46 <---------AHL20(2) >TOE2(3)--------->AHL20(2)  <----------DOF2  --------->RVE1(1)        <---------AHL20(2)--------->ANAC58   aaattatttaatttttttgcaaaatattattctttttttttagggaaaaaatctaaaaaaaacccaactattttttatttaaaactttaatacccaattg  6888400                                                                                                <----                                                                                               ------                                                                                              -------                                                                                           ------->GAMYB                                                                                          <xxxxxxxxxx                                                                                          --------->MYB46(3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                  ----------->GT1         <xxxxxxxxxx                                                                  <---------MYB46(3)  --------->DOF5.7(2)                             --------->AHL20(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             <---------AHL20(2)                <---------ANAC58      <----------DOF2                        --------->AHL20(1)                     --------->MYB52(2)  --------->LBD16             ---------->DOF2 <---------AHL20(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)-----           --------->TOE2(3)--------->AHL20(2)         --------->AHL20(2)         <---------ANAC58    <---------WOX13(1)  <---------AHL20(1)             <---------AHL20(2)         <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ATHB12      <---------ARR11(3)            --------->AHL20(2) <---------ATHB12<xxxxxxxxxxx <---------YAB1         --------->AHL20(2)      --------->ZAT6 <---------ANAC58   <---------ANAC58   tttttgattggaacctaaagttccaaaatattaaattttgttcaagaaaaacactatttaattgttcgtggttaaatcattcatgcgcgttaacagacgt  6888500  Previous    Next  AGI:  At2g15790.1    Description:  SQN (SQUINT). Identical to Peptidyl-prolyl cis-trans isomerase CYP40 (CYP40) [Arabidopsis Thaliana] (GB:Q9C566;GB:Q9XIL2); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G63400.2); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G63400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47759.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); Range:  from: 6884856    to: 6887980    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g15800.1    Description:  transposable element gene Range:  from: 6887907    to: 6889823    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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