Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------GLK1(1)                                                    --------->CCA1(2)                      --------->GLK1(2)                                                --------->ALFIN1                          <---------GLK1(2)                  <------MYB46(1)             <---------ANAC46                            --------->ARR14(2)                  <------MYB83               <---------TOE2(3)                 ------>ZmHOX2a(2)                 <---------AtMYB61     --------->HSFC1(2)        <---------At4g35610     <------ZmHOX2a(1)              <---------ZAT6           <---------HSFC1(2)  <-------GAMYB  --------->At5g28300 <------ ----->HSFB2a(2)<--------P       <-----------ARR10 <---------ARR14(2)   <---------DEAR3(1)<---------ARR14(2) ----ANAC46   <-----------RAV1(1)--------->GLK1(2) --------->ARR14(2)----------->HVH21 <---------TOE2(3) ---DOF2--------->ATHB12<---------GLK1(2)<----------DOF2  <---------DEAR3(1)   =================HOX2a_HOX2a   tggaactcgttgattagtgttggtctgattctgagaatcgaagctttgaggtggatatgggcgttgatgctgagacggtgatccagattgaggattctgg  6840500                   <---------ARR14(2)                   --------->ARR14(2)                  <-------GAMYB                  <------NtERF2                 <---------MYB46(3)                <---------ANAC46               <---------LBD16               --------->ATERF1(1)               <------NtERF2               <---------At4g35610              <---------ORA47(2)              <---------ERF1              <---------RRTF1(1)              <---------RAP2.6(1)              ------>NtERF2              <---------ATERF1(1)              <---------DEAR4(2)              <---------RAP2.3(1)             <---------DEAR3(1)             <---------RAP2.3(2)             <---------RRTF1(3)             <---------ATERF1(2)             <---------ANAC46             <---------RRTF1(2)             --------->ALFIN1             <---------RAP2.6(2)             <---------RAP2.3(3)             --------->DEAR3(1)            <---------ABI4(1)            ------>NtERF2            --------->ATERF1(1)            <------NtERF2           <---------ATERF1(1)           <---------ERF1           <---------RRTF1(1)           <---------RAP2.3(1)          <---------RRTF1(3)          <---------RAP2.3(3)          <---------RRTF1(2)                               --------->LBD16          <---------RAP2.3(2)                             <---------ANAC46          <---------DEAR3(1)                             <---------LBD16                           --          <---------RAP2.6(2)                         <---------SPL7                               <-         <---------LBD16   <---------AtMYB61       <---------ANAC46               --------->GLK1(2)-- -----RAV1(1)--------->ATERF1(2)      ------>ZmHOX2a(2) --------->MYB52(1)    <------ZmHOX2a(1)    --   tggtaatcgtttgcggcggcggatgtgcttaggtgtttgatcggaattgagtttagggtaccggagaagtggaattgagaggagagtctgggaaatgaag  6840600                                             --------->ANAC58                                             --------->ANAC58                                             --------->ANAC46                                            <---------ZAT18                                            --------->ZAT18                                         <---------ANAC58                                         <---------ANAC58                                  <---------LBD16                                --------->GLK1(2)          <------ZmHOX2a(1)  <---------ARR11(3)  --------->MYB52(1)         --------->ARR14(2)   <---------MYB52(2) ------->ANAC58              <---------ARR14(2)   --------->MYB46(3) --------ANAC55(2)           --------->ARR11(3) --------->MYB52(1)                              ----- ------->ANAC58 <---------At4g35610      <---------ANAC46            <---------ARR11(3)      <------- ------->ANAC55(2)      ----------->TGA1<-------TEIL                 --------->ARR11(3)     <--------   aacgtaactgaaggagagagccgattgtgacgatattctgggttcgtgcgcaacgaatggccattagagaagacattttctctgagagaaatggtgaacg  6840700                                                                          <------ZmHOX2a(1)                                                                        --------->LBD16                                                                        <---------TOE1(2)                                                                       <---------LBD16                                                                       <-----------RAV1(2)                                                                      <---------LBD16                                                                 <---------HSFB2a(1)                                                                 <---------KAN4(1)                                                                 --------->HSFB2a(1)                                                                 --------->KAN4(1)                                                                 <----------TaMYB80             <----                                                                <-----------ARR10      --------->YAB1                                    --------->GLK1(2)           --------->ARR14(2)    <---------YAB1       <---------YAB1       <---------STY1(1)                   <---------KAN4(2)   --------->YAB1 ------>GT1               --------->TOE2(3)      <---------YAB1 ---------->TaMYB80  <---------ICU4 --DOF5.7(2)        --------->AtMYB61  ----------->GT1          <---------ARR14(2) <---------ATHB51<- -WRKY38(1)  <------ZmHOX2a(1) <---------ZAT6    <---------TOE2(3)--------->KAN4(2)--------->ICU4  <-   attaaaaccctgataggagaaaccaaaaccctagtgagagtctgtgaaaataagattggggatgagaatattcccaggaaatgaaattatgataagtttc  6840800                                         <------NtERF2                              --------->AHL20(1)           --------->AHL20(1)                              <---------AHL20(2)           <---------AHL20(1)                              <---------AHL20(1)           --------->ARR11(3)                             <---------AHL20(2)            *TSS                             --------->AHL20(2)<------MYB46(1)                         --------->AHL20(2)    ----------->GT1      <---------ANAC58   <---------AHL20(2)    <---------ANAC46      <----------DOF2              <--      <---------ANAC58  <---------AHL20(2)     <------MYB83<---------ARR11(3)                  ------ -------GT1 --------->MYB59  --------->YAB1<---------ZAT2<---------TOE2(3)                 <---------AHL20(2) --------DAG2           --------->AHL20(2) --------->ZAT2<---------YAB1                  <---------YAB1 ---------DOF2    <-------GAMYB<---------YAB1 --------->MYB59<------------CBF         <---------AHL20(2)   acttttgggcttgttaggcctgttgattaaattatatttgggccgagttgggttaaattaagatattgcaactttaggccttgaatgttttatttttatc  6840900                            --------->ANAC46                          ------>ZmHOX2a(2)                        <---------ARR11(3)                        --------->ARR11(3)                       --------->YAB1                                         <----------DOF2                      <---------ATHB12                                     <-----------GT1          <---------ARR11(3)--------->ANAC58                          --------->AHL20(1)           --          --------->ARR11(3)--------->ANAC58                          <---------AHL20(1)          --- ----------CBF    ------------>CBF--------->ARR14(2)               --------->YAB1                 <-- ------>CBF       <---------ATHB12<---------ARR14(2)               --------->AHL20(2)         -------   aattgtcgtcaagttcttaaatcaatgatctcgccatatcgactcaaaatcacatttgtgtagtttgaataatatttttactttgaagtttgaatataaa  6841000                                                                  --------->MYB52(1)                                                                <---------MYB52(2)                                                               --------->ANAC58                                                               --------->ANAC46                                                               --------->ANAC58                                                               <---------ANAC55(2)                                                               --------->ANAC55(1)                                                               --------->ANAC55(2)              --------->YAB1                            --------->REM1(2) ------->CCA1(2)                           <-----------GT1<---------ETT(2) ------>ARR11(1)              <---------At5g28300    <---------ANAC58   --------->CCA1(2) -------ARR11(3) <-----------GT1    ----------->GT1  <---------ANAC58  <---------ARR14(2) --->DOF2    <---------YAB1  <-----------GT1         <---------ANAC46  --------->ARR14(2)     <------   gatttgaacaaatctataataacataacatattacagtgtgttattaacacattttcgtgtagacaagtaacagatatgtctatctatacagacttattt  6841100                                          <------MYB46(1)                                          <------MYB83                                         --------->MYB111(1)                         <---------ARR11(3)                         <---------ARR14(3)              ----------->RAV1(1)        --------->MYB59             --------->ANAC46            --------->MYB46(2)           --------->ANAC58            <---------MYB52(1)           --------->ANAC58         ------->TEIL           --------->ANAC46------>ZmHOX2a(2)                       <-------TEIL        --------->ZAT14  --------->ARR14(2)                       <-----------GT1 ------>ZmHOX2a(1)    <---------------AtSPL8<------ZmHOX2a(2)            <-----------TGA1     --------->LBD16   <---------ANAC46      <---------ARR14(2)            <-----------HVH21  <---------LBD16        <--- ---YAB1<---------ZAT18  --------->ARR11(3)           --------->YAB1 --------->ARR11(3)    ------>ZmHOX2a(1)   ttgagacttgtacacacaacatttgaagatccctcatgtatgttaggttgtagtaatcgtcactctatatacatcttccgcatcctatacatcctcttcc  6841200                       --------->LBD16                      ----------------->AGL1                      --------------->AGL15                      <---------------AGL15                     <-----------------AGL1                     <-----------------AG                 <---------ARR14(2)               --------->DAG2      --------->ARR11(3)                        <---------ANAC58                     --------->ANAC58      <---------ARR11(3)           --------->ANAC46       --------->ARR14(2)         --------->ANAC58 -------DOF2         <-----------------AGL2     <---------ANAC58         --------->YAB1   ---------->DOF2   tttctaaacatctctctactacttccccatatggttcacatcacccagtaccttgctcagtttctgcgatttcattcatagtcttgaacggaaaaagcgt  6841300                                    <-------PIF5                                    ------->PIF5                                   ==========================MYC_MYB                                   ==========================MYC_MYB                                   ====================================MYC_MYB                                   <---------ANAC58                   --------->ARR14(2)                                   <---------ANAC58                   <---------ARR14(2)                                   <---------bZIP60(2)                --------->GLK1(2)                                   --------->TGA1a                   <---------GLK1(1)                                   <---------O2                  --------->ANAC58                                   --------->O2  <---------WRKY18(1) <---------CCA1(2)                            --------->ALFIN1    --------->WRKY38(1)  --------->GLK1(1)                        <---------ANAC46        --------->WRKY12 --------->ANAC58                        --------->ANAC55(2)<-------MYC3         ------->GAMYB                        <---------ANAC55(2)------->MYC3         <---------LBD16                       <---------LBD16  <---------ANAC46      -------->P    <---------GLK1(1)            --------->CCA1(2)      <---------TGA1a    <---------MYB52(1)    --------->GLK1(1)           --------->ARR14(2)    <------ZmHOX2a(1)   <-------GAMYB--------->LBD16               <----           <---------ARR11(3) <------ZmHOX2a(1) ----------->HVH21--------->ANAC46     ------>ZmHOX2a(1)   ttcttaaaaccaagatttgagttcttacgggaggaggacgtggcatatggttgaccgttgagacaacccgcaaatctgatatcccatccttcgatgttct  6841400  Previous    Next  AGI:  At2g15690.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G32450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47801.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70199.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6838077    to: 6840859    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g15695.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47790.1); contains InterPro domain Protein of unknown function DUF829, eukaryotic (InterPro:IPR008547) Range:  from: 6840962    to: 6843516    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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