Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------DEAR3(2)                                             <------MYB46(1)              ------->TEIL <---------YAB1    <------MYB83              <---------ARR11(1)            <---------MYB46(3)                                  -----             <---------GLK1(2)              <---------DEAR3(1)                              ---------             <---------CCA1(2)<---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       ---------             <---------ARR14(1)             <---------DEAR4(1)                             <---------YAB1  --------->AtLEC2      <---------YAB1      <---------DREB2C(2)                         <---------ARR14(2)  --------->ANAC58   <---------AHL20(2)    <---------ORA47(1)                           --------->ARR14(2)  --------->ANAC58   --------->AHL20(2) <---------AtMYB61                         <---------ZAT14  --------->ANAC46 <----------DOF2<---------ANAC46   <---------ATHB12     <-----------GT1--------->CCA1(2)   ctacatgcaaaaatcgaatctcttttattattaatgaagtgtatggtcggtgtcaataactaatatgtcatattttttacagactgttcagatatgataa  6817200                        <------MYB83                                        <---------AHL20(2)                        <------MYB46(1)                                     --------->AHL20(2)                      <--------P                                      <---------AHL20(2)                    <---------MYB46(3)                              <---------AHL20(2)                    --------->ATHB12                              <---------AHL20(2)                 ------>MYB83                                    <---------AHL20(2)                 ------>MYB46(1)                                 --------->AHL20(2)               ------->GAMYB   <---------YAB1                    --------->ARR11(3)             -------->P<---------MYB46(3)      --------->ANAC58  <---------ARR11(3)             ------>MYB46(1) --------->At4g35610              --------->AHL20(2) ---->AHL20(2)--------->MYB46(3)               --------->ANAC46  <---------AHL20(1)         --------- >YAB1       ------>MYB83    <---------At4g35610             <---------AHL20(2)             <-------- -->GT1 <-----------GT1<---------AtMYB61       --------->ANAC58  --------->AHL20(1)      <---------YAB1   aaatagtttttttccaaccaaatggttggtcttctgagtgtatttgaaaacgacattgaagaattaatatatttttttttaattttagttttttatagta  6817300                           --------->YAB1                    ------>MYB83                    -------->P                    ------>MYB46(1)                   ------>ZmHOX2a(1)                                      <---------AHL20(2)                <<<<<<<<<ARR1                                            <---------AHL20(1)                <<<<<<<<<ARR2                                            <---------AHL20(2)     <---------AHL20(2)   <---------YAB1                                 --------->AHL20(2)     --------->AHL20(2) <---------CCA1(2)                            <---------AHL20(2) ------>AtSPL8  <<<<<<<<<ARR1              <-----------GT1           <---------YAB1 --------->YAB1 -------AtSPL8  <<<<<<<<<ARR2       ----------->GT1 <---------TOE2(3)--------->AHL20(2)   --------->AHL20(2)   caaatattaaaacaaacaatcctaccatatcataacatttgtaaataacattttaagttttgttttgagttttaattaattttctatgacaaaaaaatga  6817400                                                        <---------AHL20(2)                                                        <---------AHL20(1)                                                        --------->AHL20(1)                                                        --------->AHL20(2)                                         <---------AHL20(2)                                         --------->AHL20(2)                              --------->AHL20(2)       <---------AHL20(2)             --------->YAB1                      ----------->GT1   --------->AHL20(2)             --------->AHL20(2)    --------                 --------->YAB1   --------->ANAC46     --------->AHL20(2)          <---------GLK1(1)   agtcaatagactaagtgaatcatatagtataaataaacacaatttaaatagtttcaaataaatttagaaagaataaaacaaatagaaatcagaaggtgtc  6817500                                                                                                  ---                                                                                                  ---                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                          <---------TGA1a                    <------ZmHOX2a(2)                                                     <---------O2              --------->TOE2(2)                                                           ===========              --------->TOE1(2)                                                           --------->O2        --------->ANAC46                                                                  --------->TGA1a        --------->ANAC58                                                                 --------->SPL7        --------->ANAC58                                                                <---------ALFIN1       ====================HOX2a_HOX2a         <------------CBF                        <------NtERF2       ------>ZmHOX2a(1)                  <----------DOF2                              <---------SPL7    =======================HOX2a_HOX2a---------->ID1                                 --------->PCF2--    ------>ZmHOX2a(1) ---------->DOF2<---------WRKY18(1)  *TSS <---------CCA1(2)     --------------->AtSPL3 ->ALFIN1  ----------->RAV1(1)      ----------->HVH21    <---------ARR11(3)     <---------ICU4    ---   tgtttcctcctcgcaacatacgatcaaagagaaacaacttgaccctttacattgctcaagagctcatctcttccctctacaaaaatggccgcacgtctcc  6817600                                                                                                 ====                                                                                                 <---                                                                                                <----                                                                                                =====                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                           ----------                                                                                     ------>MYB46(1)                                                                                   <---------MYB46(2)                                                                                   --------->AtMYB61                                                                                   <---------MYB55(2)                             --------->YAB1                                        <---------MYB111(2)                             <---------ICU4                                        --------->MYB46(3)                            <---------YAB1                                         <---------MYB111(1)                            --------->ICU4                                    ------>ZmHOX2a(1)------                          <---------ICU4                                      =======================                          --------->YAB1                                      =======================                     --------->LBD16                                       ------>ZmHOX2a(1)  -------                     ------>NtERF2                                         ========================== --->MYB46(1)       --------->ANAC58                               ------>ZmHOX2a(1) ------>MYB83---- ----->P<---------ALFIN1 --------->ICU4                            ================================== ======MYC_MYB      --------->ANAC58               <-----------HVH21       ========================== ------->HSFB2a(1)  --------->ANAC46              <----------DOF2  ================================== --->MYB83    ------>ZmHOX2a(1)       <----------DOF2         ------>ZmHOX2a(1)   --------->ANAC46   aaccttctcccaactccttcttccgccatcatcatgacttctttctctctcactttcacatctcctctcctcccttcctcctccaccaaacccaaaagat  6817700            --------->RAP2.3(1)            --------->ATERF1(1)            <------NtERF2            --------->DEAR4(2)           --------->ABI4(1)           <---------RAP2.3(1)           <---------ATERF1(1)          --------->ANAC46          --------->ATERF1(2)          --------->RAP2.3(3)          <---------ATERF1(2)          <---------DEAR3(1)          --------->DEAR3(1)          --------->RAP2.3(2)         --------->ORA47(2)         --------->RAP2.6(1)         <------NtERF2         --------->ERF1         --------->DEAR4(2)         --------->RRTF1(1)         --------->ATERF1(1)        <---------RRTF1(1)        ------>NtERF2        <---------RAP2.3(1)        <---------ATERF1(1)     <-----------HVH21                     ------->GAMYB    <-----------RAV1(1)                    <---------ALFIN1   ------>ZmHOX2a(1)                       --------->DREB2C(2)  <---------ANAC58                         --------->DEAR3(1)  <---------ANAC58                        --------->ORA47(2) =========HOX2a_HOX2a                --------->ARR14(2) ----TEIL--------->RAP2.3(1)         <---------ARR14(2) --ZmHOX2a(2)                        <---------ARR11(1) =========HOX2a_HOX2a          ------>NtERF2--------->ABI4(1) ----ARR14(2)                 --------->DEAR3(1)              ------>ZmHOX2a(2) --->ARR11(3)                <---------LBD16------>NtERF2    <------ZmHOX2a(2) ----ARR11(3)--------->DEAR3(1)--------->LBD16              --------->ARR11(3) >DOF2 <---------DEAR3(1)  --------->ARR14(2)       ----------->HVH21 --->ARR14(2)--------->RAP2.3(2)------>NtERF2       --------->WRKY12 ==HOX2a_HOX2a            <---------At4g35610     <-------GAMYB   --------->HSFB2a(2) ===HOX2a_HOX2a           --------->At4g35610     <---------At4g35610 -->RVE1(1)------>NtERF2  --------->ZAT2  --------->MYB46(3)<---------ARR11(3) ===HOX2a_HOX2a           <---------ZAT2 <---------At5g28300<---------ARR14(2) -->ZmHOX2a(2)------>NtERF2<---------ARR14(2)     --------->At4g35610 ==HOX2a_HOX2a<---------At4g35610  <------NtERF2 <-----------RAV1(1) ==HOX2a_HOX2a--------->At4g35610 --------->RAP2.6(2)       <-----------ARR10               --------- ===HOX2a_HOX2a       --------->AtMYB61--------->MYB46(3)   --------->ARR14(2)   <---------ANAC46  <-   ccgtccttgtcgccgccgctcagaccacagctccggccgaatccaccgcctctgttgacgcagatcgtctcgagccaagagttgagttgaaagatggttt  6817800                                             ----------->GT1                               --------->WOX13(1)   --------->ARR11(3)                             ==============HOX2a_HOX2a                             <------ZmHOX2a(2)    <---------YAB1                             ==================HOX2a_HOX2a                       --------->DAG2   ====================HOX2a_HOX2a               <---------HSFC1(2)       <------ZmHOX2a(1)               --------->HSFC1(2)      --------->LBD16                                              <               --------->HSFB2a(1)  ========================HOX2a_HOX2a                             < -->GT1        <---------HSFB2a(1)  ------>ZmHOX2a(1)<------ZmHOX2a(2)                            <-- --------AHL20(2)     ---------->DOF2<-----------RAV1(2)                                          ---   ttttattctcaaggagaagtttcgaaaagggatcaatcctcaggagaaggttaagatcgagagagagcccatgaagttgtttatggagaatggtattgaa  6817900                                                                              <------MYB46(1)                                                                              <------MYB83                                                                           <---------ANAC46                                                                           <---------ANAC58                                                                      <---------TGA1a                                                                      =========================bZIP_DOF                                                          <---------TOE2(3)<---------ANAC58      ----                                   =============================================bZIP_DOF         ----          --------->GLK1(1)        ---------->DOF2  <---------ARR11(3)<---------O2             ------ ---------ANAC58                <---------ZAT6      --------->ARR11(3)--------->O2  <----------DOF2 ---------ANAC58              ----------->GT1   --------->YAB1        =========================bZIP_DOF -------ARR11(3)      <---------ARR11(3)     ===================================bZIP_DOF   --------->LBD16 ------>ARR11(3)      --------->ARR11(3)     ---------->DOF2          --------->TGA1a   <---------At5g28300   gagcttgctaagaaatctatggaagagcttgatagtgaaaagtcttctaaagatgatattgatgttagactcaagtggcttggtctctttcaccgtagaa  6818000                                           --------->ATHB12                                      <---------ANAC46          <---------ANAC58                                      <---------ANAC58          <---------ANAC58                   --                           ------>ZmHOX2a(1)              <---------TOE1(3)                      <---        ------->TEIL   --------->ARR14(2) <---------YAB1  <---------TOE2(3)   <---------ANAC46   <--- ----->ANAC58     ------>ZmHOX2a(1)   <---------ANAC58--------->REM1(2)  <---------ZAT6          <--- ----->ANAC58  <XXXXXXXXXXXXXXXXXXXXMIR854A-E<---------WOX13(1) <---------ANAC46              <------ ---->DOF2     ------>ZmHOX2a(1)   --------->WRKY12----------->GT1  <----------DOF2     <----------DOF2   agcatcagtgtatgttcctcctctctatcctcttccattgacttgtgattgaactgtgtaaaggtttcgtctttagtcttatgtgtgcttctttcaatga  6818100  Previous    Next  AGI:  At2g15620.1    Description:  NIR1 (NITRITE REDUCTASE); ferredoxin-nitrate reductase. Identical to Ferredoxin--nitrite reductase, chloroplast precursor (NIR1) [Arabidopsis Thaliana] (GB:Q39161;GB:Q8H163;GB:Q8H164); similar to SIR (sulfite reductase), sulfite reductase (ferredoxin) [Arabidopsis thaliana] (TAIR:AT5G04590.1); similar to nitrite reductase [Nicotiana tabacum] (GB:BAD15363.1); similar to nitrite reductase [Nicotiana tabacum] (GB:BAD15365.1); similar to unknown [Populus trichocarpa] (GB:ABK95605.1); contains InterPro domain Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; (InterPro:IPR005117); contains InterPro domain Nitrite and sulphit Range:  from: 6817558    to: 6820021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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