Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <-----------GT1                                          ==================HOX2a_HOX2a                                          =====================HOX2a_HOX2a                                         ======================HOX2a_HOX2a                                         ===================HOX2a_HOX2a                                         <------ZmHOX2a(2)                                         <---------GLK1(1)                                         --------->GLK1(1)                                        <---------ARR14(2)                                        --------->ARR11(3)                                        --------->ARR14(2)                                        <---------AGP1                                        --------->AGP1                                        <---------ARR11(3)                                       <---------CCA1(2)                                       <---------At4g35610<----------DOF2                                  --------->ARR14(2)    ------>ZmHOX2a(1)                                  <---------ARR14(2) ------>ZmHOX2a(1)                           ---------->DOF2------>ZmHOX2a(2)                  ---------->DOF2<------ZmHOX2a(1)<-----------GT1  --------->ATHB12               ---                ------->GAMYB    ===============HOX2a_HOX2a        <---------ICU4                <---             ----------->RAV1(1) ================HOX2a_HOX2a      <---------YAB1           <---------       <---------ATHB12   ======================HOX2a_HOX2a       --------->ICU4      <---------AHL20(2)     --------->WOX13(1)   =======================HOX2a_HOX2a    --------->YAB1        --------->AHL20(2) --ATHB5--------->YAB1    <------ZmHOX2a(1)  <----------DOF2  <-----------GT1 --------->GLK1(2)  <---   cagttttcaatcatacaacagaaagggaggaaagaggattcagatctcttttttcctcctcttttttcatgattaccgataatctcattaaaatcaccga  6789700                                     <---------WRKY12                                    --------->WRKY18(1)                --------->MYB52(1)                           <---------------AGL15                       -------->P                          ----------------->AG                       --------->MYB46(3)    --------->YAB1                          <-----------------AGL1           --------->ANAC58       --------->At5g28300                          ----------------->AGL1           --------->ANAC58 <---------ARR14(2)   <---                   ------>MYB83 <---------ANAC55(2)        --------->ANAC46 --------->ARR14(2)   <--- ------>YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)                  <---------LBD16 --------->LBD16  ---------- ---ZmHOX2a(2)     ------>MYB46(1) <-----------HVH21      <---------At5g28300<------ZmHOX2a(2)  ----- --GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->MYB52(1) <-----------ARR10   ----- ------ATHB12    <---------MYB59--------->ANAC55(2)      <-----------GT1<---------LBD16  ---------->DOF2   tcataaaccatggctcagaccgaacaataccaatacgggtcaaacgtttccaaactaattcacggtattgaactaccggatcaccgtaaacaaaagtaat  6789800                              <---------ARR11(3)                  <--------ATHB1                  <---------ICU4                                     <---------MYB52(1)   <---------LBD16--------->YAB1                                   --------->LBD16 ------ICU4       --------->ATHB51               <-------TEIL    <---------LBD16 ------AHL20(2)   -------->ATHB1           <------ZmHOX2a(2)   --------->MYB52(1)                   - ->GT1           <---------ATHB12   --------->YAB1          --------->TOE1(3)         ---------->DOF2 ---->AHL20(2)   --------->ICU4    <---------ATHB12         --------->TOE2(3)--------->HSFB2a(2)  --- ---->ICU4       <---------ATHB51--------->WOX13(1)    >>>>>>>>>GATA-1<--------P   --------->AHL20(2)   aaatacgcggtttccatcaataattgtttcaatatcaatcaaacgatcacatacatagataaacttaaccgggtagtctcgagaataaaaaagagcaaga  6789900                                                                                 <---------YAB1                                                                                --------->KAN4(2)                                                                              <---------YAB1                                                                              <------ZmHOX2a(2)                                                                             --------->ARR11(3)               <------MYB46(1)                                               <---------ARR11(3)            <---------MYB52(1)                                        <-------TEIL --------->TOE2(3)     <-----------HVH21                ---------->DOF2                --------->CCA1(2) <---------ALFIN1                    --------->YAB1                 --------->ARR14(2) --------->AtMYB61                  <<<<<<<<<ARR2 ------->TEIL      <---------ARR14(2) -------->MYB46(3)<-------TEIL      <---------ATHB12                --------->ARR11(3) ------>AtMYB61<------MYB83       --------->WOX13(1)                <---------ARR11(3)              -   ccaccactgttaccgataggttcaacagtttttaaacaatcaaagcctaatgaaacttgtacattctgaagatacacaagatcattcttagtttccgata  6790000                       ------->GAMYB             <---------REM1(1)      ------------>AtMYB77                       --------->ANAC46  <---------ETT(2)              ----------->HVH21                       ----------->HVH21 <---------WRKY38(1)    <---------ALFIN1  --------->ANAC58                       <---------ETT(1)  <---------WRKY12    <---------TCP15(1)   --------->ANAC58         <---------LBD16  <---------ALFIN1 <---------LBD16   <---------TCP20     --------->LBD16        ----------->RAV1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ALFIN1--------->ANAC46       --------->GLK1(2)<-----------HVH21--------->ETT(2)    --------->PCF2  <---------ARR14(2) --------->DOF2   <-------TEIL           ----------->HVH21  <-----------HVH21--------->ARR14(2)     *TSS   aaaaaagaaaacctggagagtacatccgacacatctcttccagtcgacgggatgtagttttcggtcccaccccttgacagttccacgaaataagcctcat  6790100                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <------ZmHOX2a(2)                                              <----------DOF2                  <---------ARR14(2)                                     --------->ANAC58                  --------->ARR14(2)                                   <---------ALFIN1                 <---------PCF2       --------->YAB1                  <------NtERF2              --------->ALFIN1      --------->ANAC58                  --------->ZAT18            <------MYB83            --------->ANAC46                  <---------ZAT18            <---------ZAT2<---------HSFB2a(2)                       --------->ANAC58        <--------            <------MYB46(1)--------->LBD16                          --------->ANAC46      <----------           --------->DAG2 --------->HSFB2a(2)                       --------->ANAC58 <-----------GT1           <---------AtMYB61        --------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----       --------->ETT(1)   --------->ANAC46   --------->LBD16       --------->RAP2.6(3)  --------->MYB46(3) <-----------RAV1(1)------>ZmHOX2a(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC58--------->ANAC46   gttttgttgtcggaaggtgggatcccttccgaaacaacactcaaaaccggactcttagtcttggaagtagacggcactccatttcttttacccgtcgtgg  6790200           ------>ZmHOX2a(2)          --------->GLK1(1)          <------ZmHOX2a(2)          <---------GLK1(1)         --------->ARR11(3)         <---------ARR14(2)         <---------ARR11(3)         --------->ARR14(2)         <---------AGP1         --------->GLK1(2)         <---------ARR14(3)             <---------GLK1(1)         --------->ARR14(3)          <---------MYB46(3)   --------->HSFB2a(2)           <---------MYB46(3)   <---------HSFB2a(2)           <-----------RAV1(1)   ==============HOX2a_HOX2a   --------->GLK1(1)   ===============HOX2a_HOX2a --------->ARR14(2)     --------->LBD16   ------>ZmHOX2a(1)          <---------ARR14(2)   <---------LBD16 -ANAC46 <-----------ARR10  --------->LBD16       <---------LBD16            ------->TEIL -HVH21 <------ZmHOX2a(1) <---------LBD16    <----------DOF2   --------->TOE2(3) ----MYB46(3)  ------>NtERF2<------NtERF2   <---------DAG2     --------->TOE1(3)<---------AHL20(2)   ttctcctagaggatctcggcctagatgggccggatttgttggatagccttttctcgggagataaaccctaaatgtgatgaattttttttgaagccaagtt  6790300                                                                                                 ====                                                                                                 ----                                                                                             <-------                                                                                             --------                                                                                            <--------                                                                                           ------>NtERF2                                                                                          <---------ALFIN1                                                                                         <------NtERF2                                                                                        <---------ATERF1(1)                                                                                        ------>NtERF2                                                                                        --------->TCP15(2)                                      <---------ZAT18                                  <---------TCP20                                      --------->ZAT18                                  <---------TCP15(1)                                  --------->ALFIN1                                     --------->PCF2                             <---------HSFB2a(2)                                       --------->PCF5                             --------->HSFB2a(2)                 ------>ZmHOX2a(1)  --------->ANAC46                             --------->HSFC1(1)     <----------DOF2 ------>ZmHOX2a(1)<---------ATERF1(1)                            <---------LBD16         --------------------->WRI1     --------->RAP2.6(3)  ---------->DOF2       <----------DOF2      <----------DOF2 ------>ZmHOX2a(1)   <xxxxxxxxxxxxxxxxxxx   caaacaaaggcccgaatttagttgggcttttctggaatggggcacaactttcttctttgagtccttcctcctagggatagcaatagacggccccacctcc  6790400                                                                                       <---------LBD16                                                                                     ------>MYB83                                                                                     ------>MYB46(1)                                                                                     --------->MYB52(1)                                        --------->At4g35610                        --------->AtMYB61                        --------->ARR11(3)    <---------At4g35610                  --------->MYB46(3)           --------->At4g35610          ----------->RAV1(2)                        <---------MYB46(2)           <---------ZAT2               <---------At4g35610                     <-----------GT1    -- =========================HOX2a_HOX2a  ------>NtERF2                         --------->ARR14(2)  ---- -->ZmHOX2a(1)      ---------->DOF2    --------->LBD16   <---------ANAC58  --------->LBD16       ==== --ALFIN1  --------->ZAT2             <---------RAP2.6(2)<---------ANAC58 --------->ANAC46       ==== ->AtMYB61 <---------At4g35610     <-----------GT1      <---------MYB46(3)--------->LBD16      ------ -ZAT2   <---------ZAT18<---------ARR11(3)    --------->At4g35610        --------->LBD16    <-------- xxxsmallRNA(si3)  <------ZmHOX2a(2) <---------LBD16 --------->CCA1(2)   <---------LBD16 --------->LBD16   tccgattgaagcgagctcacgatcaagctcttcaatttttccggctgaagctcagagatgggtgctacatggctccccggaatcaccaaaccggattgat  6790500                                                        --------->ATERF1(1)                                                        <------NtERF2                                                       <---------ATERF1(1)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------At4g35610                       --------->ANAC58    <---------ALFIN1<------NtERF2                       --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         ----------->RAV1(2)        <-----------bZIP910(2)------>NtERF2--------->At4g35610 ---->ZmHOX2a(1)       --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) -->ZmHOX2a(2)      ------>ZmHOX2a(1) <---------At4g35610 <---------DEAR3(2) ==========================HOX2a_HOX2a--------->At4g35610<---------DEAR3(1) =================HOX2a_HOX2a  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC58 --->ARR11(3)  <---------At4g35610<-----------TGA1     <---------SPL7 --------->ANAC58 -WOX13(1) ------>ZmHOX2a(1)--------->MYB46(3)        <---------DEAR3(1)                        -----   cctgaagactctcctgaagctcctcactcaacaaatcgtcagcatccacatctaggtcgtcggcaagatggtaagcagcctcgtcttcttcagtccaatc  6790600  Previous    Next  AGI:  At2g15540.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.7e-33 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 6786039    to: 6790100    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g15550.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16410.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) Range:  from: 6790268    to: 6792262    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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