Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <---------At4g35610                                                                  --------->At4g35610                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                <---------WRKY38(1)                                                                <---------WRKY12                                                                <---------WRKY45                                                               <<<<<<<<<<WRKY6                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                               ----------->GT1 <<<<<<<<<<WRKY11                                               <----------ID1 <-----------HVH21                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                       ----------------->AGL1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   <---------ANAC58     <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ZAT6                                 <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       ------->TEIL                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              <---------YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)     --------->ANAC46 ------>DOF2               <---------YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->GT1             <---------TOE2(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)   aaagaaacttaactaaacttgttaacattttgattatgggtgtcaaaatgggtcaaaatttatgggtcaactcaattcaactcaacccatgaactctaat  6740200                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                <---------WRKY12xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <-----------HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <---------MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     --------->ICU4                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                    xxxxxxxxxxxxxxxxx                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxxxx                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                <------MYB46(1)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <------MYB83                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->MYB59                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ----------->GT1<-------GAMYB                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxx              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <--------             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxx   gagttcaaaattttgactcaaatgagttgatgggtcaaatgagttgatgagtcaattggtttgatgagtaaaattagttgggttgtaatggttaatggta  6740300                                                                                              <------                                                                                              <------                                                                                             --------                                                                                             <-------                                                                                             <-------                <---------AHL20(2)                                                       <---------MYB46(3)                --------->AHL20(2)                                               <---------ANAC46     <------ZmHOX2a(2)                                                         xxxxxxxxxxxxxxxxxxxxxx    <---------ARR11(3)                                                         ------>ZmHOX2a(2)    --------->ARR11(3)                                       --------->ZAT6   <------ZmHOX2a(2) xxxxx>smallRNA(le3)                                    --------->YAB1       <---------ARR14(3) xxxsmallRNA(le3)                             --------->AHL20(1)             --------->ARR11(3) xxxxx>smallRNA(fl3)                         --------->AHL20(2)              <---------ARR11(3)   <-- -------AtSPL8  --------->AHL20(1)      ----------------->AGL3               --------->ARR14(3)  ---- xxxxxxxxx>smallRNA(i2) <-------TEIL  ------>ZmHOX2a(1)<---------YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ctatgagatcatttcaaattttttgatacatggtgttttcctcccaaatatatgactataatatcactaaatactatgagatctcgtagagttgttgagt  6740400        --------->GLK1(2)       <---------GLK1(2)   ---------->DOF2 ---ANAC58                                                                     --------->DAG2 ---ANAC58                                                              --------->DAG2 ------->AtSPL8                       --------->CCA1(2)            <----------ID1 --------AtSPL3           --------->AHL20(2)                     ---------->DOF2----------->GT1 --------AtSPL8       --------->ARR11(3)                    ----------->GT1    <---------------AtSPL8 x>smallRNA(le3)      <---------ARR11(3)                    <----------ID1   ---------->DOF2 -------YAB1      ---------->DOF2  xxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ---------->DOF2 ----->SPL7   --------->YAB1   ---------->DOF2            ---------->DOF2 <----------ID1   acgataaaagaatctatgaaaaaagaacttaaataaagaggtatacgtttgacaaaaaaaaaaagaaaaaagaaaaaggaaaaggtataaaaaaaaacat  6740500                                          <---------DAG2                                    --------->bZIP60(1)                               <-----------GT1                                    <---------bZIP60(1)                           <----------DOF2                                 ----------->HVH21                                --------->TOE1(3)                               ----------->GT1                         --------->ARR14(2)                               <------MYB46(1)                         <---------ARR14(2)                               <------MYB83                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            >>>>>>>>>CBP60g                  ---------->DOF2      --------->TOE2(3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)---------->DOF2<-----------------AGL1<---------ICU4        <----------DOF2     >>>>>>>>>SARD1<----------DOF2 --------->AHL20(2)   <---------ALFIN1     <   ttgagttgggcttatatgggcctgtttgaaatttggtgacattacttttcgccaaaagaattaaaaaggcccatataggcccaactttaaacattactct  6740600         <----------DOF2      --------->ARR11(3)                                --------->LBD16      <---------ARR11(3)      <---------YAB1            ------>NtERF2     <---------CCA1(2) <---------DAG2           *TSS   <---------DEAR3(1)                 -----------   <---------AHL20(2)  <----------DOF2     ------>ZmHOX2a(1)                  <---------ICU4    -----   --------->AHL20(2)<------------------------ANAC81  <---------LBD16     <-------TEIL    --------->TOE1(3) <-----------TBP <----------DOF2           <---------CCA1(2)   --------->ARR11(3)         --------->TOE2(3) ---------ICU4   <---------DAG2  --------->GLK1(1)------>ZmHOX2a(1)----------->GT1   ---------->DOF2   aatatttatatctttctcacttttgctttattctgatttcttctcctatctccttctccggcgaagaaattgaaaattcattatccctaaaaccctaata  6740700                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                                  --------->LBD16                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                                 <---------ANAC46                                                                                 <---------ANAC55(2)                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC55(1)                                                                               <------ZmHOX2a(2)                                                                              --------->AGP1                                                                              <---------ARR14(2)                                                                              <---------ARR11(3)                                                            <---------ATHB12  --------->ARR14(2)                                                    <---------ALFIN1          --------->ARR11(3)<----                                                  ----------->RAV1(1)    <------ZmHOX2a(2)     ------                     --------->AtMYB61           <------NtERF2          --------->ARR11(3)     <-----                    --------->MYB46(3)       <---------DEAR3(2)         <---------ARR11(3)---------->DOF2   <---------HSFB2a(2)--------->MYB52(1)     <---------ATERF1(1)    ---------->DOF2<---------MYB52(1)  <-------TEIL      <---------MYB55(2)      <---------DEAR3(1)<---------GLK1(2)--------->CCA1(2)----- ------>AGL3        <---------ABI4(2)      <---------ORA47(1) --------->ARR14(2)------>ZmHOX2a(2) ----->DOF2 <-----------HVH21   <----------DOF2 ------>NtERF2--------->HSFB2a(1)<-------TEIL --------   aaggtccagagagtcgtcagaaaccaccgattagcttttgaaatggacggtgccacataccaaagattcccaaagatcaagatccgtgagcttaaagatg  6740800                                                                ------>ZmHOX2a(2)                                                               --------->GLK1(1)                                                               <---------GLK1(1)                                                              <---------ARR11(3)                                                              --------->ARR11(3)                                                       <---------ANAC46                                                       <---------ANAC58                                                       --------->ANAC55(2) --------->ANAC58                                      <---------ANAC55(2) <----------ID1          --------->TOE2(2)             <---------ANAC58 --------->ANAC58        --------->DEAR3(1)          <---------ANAC46                      <------ZmHOX2a(2) --------->ANAC46       --------->DEAR3(2)          <---------MYB52(1)                    --------->ARR11(3) -----ICU4              --------->MYB46(3)         <-----------HVH21          --------->DEAR3(2) --->ICU4        <---------ANAC46           ------->GAMYB    --------->YAB1  ------>MYB83 --------->AGP1 ----YAB1       <-------TEIL --------->HSFC1(2)   --------->ANAC46  --------->LBD16       <---------AGP1 ---->ATHB12 --------->ZAT2 --------->O2<---------WRKY38(1)  <---------ICU4  ------>MYB46(1)------>ZmHOX2a(2) ->YAB1      <---------ZAT2 <---------O2<---------WRKY12    --------->ICU4   -------->P   <---------ARR11(3)   attacgccaagttcgagcttcgtgaaaccgacgtttctatggccaacgctctccgtcgcgtaatgatctccgaagtccctaccgtcgcaatagatctagt  6740900                                                                             ------->MYC3                                                                             <-------MYC2                                                                             <-------MYC3                                                                             ------->MYC4                            ------->GAMYB                                    ------->MYC2                           --------->MYB46(3)                                ------->PIF5                         --------->MYB52(1)                                  --------->TOE1(2)                      --------->ANAC58                                       <-------PIF5                   --------->ZAT14                                          --------->HSFB2a(1)                --------->At4g35610 --------->ATHB12           ------>ZmHOX2a(1)                <---------At4g35610<-------TEIL     <------MYB83           ------->TEIL    <---------ANAC58      ----------->GT1 --------->ANAC58              <------MYB46(1)     <---------MYB52(2) <---------ANAC58     <---------TOE2(3)--------->ANAC46             --------->MYB59--------->ZAT6    --------->YAB1   cgaaatcgaggttaattcatctgtactcaacgacgagttcattgctcatcgattaggtctcattcctctcactagcgaacgtgctatgagcatgcgtttc  6741000                 <---------YAB1             <---------ANAC58                    <---------MYB52(1)             <---------ANAC46                   <-------GAMYB             <---------ANAC58      <---------ANAC58           <---------YAB1          <---------ANAC58      <---------RAP2.6(2) <-----------GT1  <------   tctcgagattgtgatgcttgtgatggagatggacaatgcgagttttgctctgttgagtttcggcttagttctaagtgtgttactgatcaaaccctagatg  6741100  Previous    Next  AGI:  At2g15430.1    Description:  RBP36A (RNA polymerase II 36 kDa polypeptide A); DNA binding / DNA-directed RNA polymerase. Identical to DNA-directed RNA polymerase II subunit RPB3-A (RPB36A) [Arabidopsis Thaliana] (GB:Q39211); similar to RBP36B (RNA polymerase II 36 kDa polypeptide B), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G15400.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60923.1); contains InterPro domain DNA-directed RNA polymerase, insert; (InterPro:IPR011262); contains InterPro domain DNA-directed RNA polymerase, RpoA/D/Rpb3-type; (InterPro:IPR011263); contains InterPro domain DNA-directed RNA polymerase, 30-40 kDa Range:  from: 6740648    to: 6742757    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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