Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                <---------At4g35610                                                --------->At4g35610                                                <---------ZAT2                                         --------->At4g35610                                       <-----------RAV1(2)                        ----------->RAV1(1)  ---------->DOF2                        ===========================RAV          <---------ETT(1)                     ==============================RAV       <---------ZAT2         <---------At4g35610        <------NtERF2  --------->ZAT2                          ---------- -->NtERF2           ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->TOE2(3) --->ATERF1(1)      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------->CDC5             ----------->GT1 --ARR14(2)      ------>NtERF2     <---------DEAR3(2)      <---------ALFIN1            <---------ANAC55(2) ->ARR14(2) --------->ZAT2        <---------DEAR3(1)       --------->ATERF1(1)  --------->At5g28300 -ZAT2   --------->At4g35610     --------->RAP2.6(3)    ------>NtERF2          ----------->GT1 >ZAT2   <---------ZAT2--------->MYB46(3)<---------At4g35610 --------->ZAT2   ----------->GT1    <---   gcccaaatgagagctgctcggcccaacaacatcaagtcggcccagatgaaagctgctcggcccagcccgacaaacttgagagggtaaaaacgtaaaaccg  6724500                <---------At4g35610                --------->At4g35610                                --------->ICU4                --------->ZAT2                                  <------ZmHOX2a(1)              <---------WRKY12                               <-----------RAV1(2)            <-----------HVH21                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------STY1(1)                                <---------PCF5    --------->GLK1(1)       --------->AHL20(2)         --------->DAG2    <---------GLK1(1)------>ZmHOX2a(1)                --------->DAG2                   xxxxxxxxxxxxxx  xxxxxxxxxxxxxxxx>smallRNA(s)                       ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >DOF2   --------->STY1(1)<---------------AGL15     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           < --------RAV1(2)<---------ZAT2       --------->At4g35610 <----------ID1          --------->GLK1(2)  <   caggggagaccctaggtcagctcctagcctataaatagcagaagacactattgggaaaagggaccaggagttattacctagagaatttaagagagaatag  6724600                                                                                       <-----------GT1                                                                                      --------->TOE1(2)                                                                       --------->ARR14(2)  <---------GLK1(2)                                                                       <---------ARR14(2)<---------YAB1                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          <---------MYB52(1)       <---------MYB52(1)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------AGP1              <---------ANAC58                xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------ZAT2               <---------ANAC58                <----------DOF2    ------->TEIL    --------->ZAT2   <----------DOF2                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(si3)    <---------MYB52(1)       <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------ANAC58    <---------ANAC58          <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------MYB52(1)   <- ---------ANAC58    <---------ANAC58        <-----------GT1     xxxxxxxxxxxxxxxx>smallRNA(i)  <------   ttgcctagctctgttatctcttgctttcccgttttccgttttgtattttctggtttttcgatttgtactttcggttctccgttctgtacttacgattctc  6724700                                                                           <------------CBF                                                                          --------->ATHB51                                                                          --------->ATHB12                                                                          <---------ICU4                                                                          -------->ATHB1                                                                          -------->HAHB4                                                                          <---------AHL20(2)                                                                         <---------YAB1                                                                         --------->ICU4                                                                       --------->ATHB51                                                                       <--------HAHB4                                                                       --------->YAB1                                                                       <---------ICU4                                                                       <--------ATHB1                                                                       -------->HAHB4                                    ---------->DOF2      --------->LBD16 <---------ATHB51                                 xxxxxxxxxxxxxxxx>smallRNA(i)         <---------ATHB51                                 --------->YAB1    <---------MYB52(1) --------->ICU4                               <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <---------ANAC58    --------->HSFC1(2)          --------->AHL20(2)           <---------At5g28300 --------->ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->YAB1                 <-      --------->AHL20(2)<---------MYB52(1)<---------HSFC1(2)<---------ALFIN1                    -----  ----------->GT1     <---------ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-----------GT1------ --------MYB52(1)<----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------YAB1      <---------ZAT14 -----GT1 <-----------GT1--------->SPL7xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------YAB1--------->ZAT14   cgttctgttaaattaccgtcttttccgttcgtcattaataaagaagctactccgttctccccaaaccccttaataattattgttacaacctctgtacaaa  6724800                 ------>NtERF2                --------->TCP16(1)                <---------PCF5                --------->TCP20                <---------PCF2             --------->ALFIN1        <---------ALFIN1       <---------ABI4(2)       --------->MYB46(3)       --------->RAP2.3(3)       --------->DEAR3(1)       <---------MYB55(2)      --------->ATERF1(1)      <------NtERF2     <---------ATERF1(1)     <xxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxsmallRNA(le3)     ------>NtERF2     <---------RAP2.3(1)                                    *TSS     <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                 <---------TOE1(1)           ----------->HVH21     <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <-------TEIL                 --------->O2     <---------ZAT18                                --------->ARR14(1)       <xxxxxxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxsmallRNA(si3)                 <---------ARR14(2)       --------->GLK1(1)    ----     <xxxxxxxxxxxxxxxxsmallRNA(si3)                --------->ARR14(2)    --------->LBD16     <-------     --------->PCF2 ----------->HVH21              --------->ARR11(1)   --------->LBD16    --------->MYB52(1)     <xxxxxxxxxxxxxxxsmallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    ----------- -----------CBF --------->TCP15(1)            --------->MYB52(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)  <--- ------->CBF <---------MYB52(1)        <------------CBFxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <------- --->ANAC46 <-----------HVH21    <---------At4g35610--------->CCA1(2)  <---------LBD16    -----------   caattggcgcccaccgtggggccagacagagtttcttctgatattgacaaacagatacgatgttgccagtaatcccggagagccacgacgagatgacgga  6724900                                                                         --------->At4g35610                                                                         <---------At4g35610                                                                       --------->MYB46(3)                                                                       <---------ALFIN1                                                                     ------>NtERF2                                                                    --------->ANAC46                                                                   <------NtERF2                                                                  ------>NtERF2                                                                 --------->PCF2                                                                 --------->RAP2.3(3)                                                                --------->ATERF1(1)                                                              --------->ANAC46                                                              --------->ANAC58                                                              --------->ANAC58                                                            <---------ATERF1(1)                                                      <---------At4g35610<---------ZAT2                                                 <---------ZAT2<---------ATERF1(1)                                          --------->SPL7   --------->ANAC46                                      <---------LBD16 --------->At4g35610--------->ZAT2                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ATERF1(1)                               <------NtERF2     --------->At4g35610<---------ALFIN1                              ------>NtERF2 --------->AtMYB61 --------->DEAR3(1)  --------->TOE1(1)          --------->ANAC58    --------->ZAT2------>NtERF2 ----->GLK1(1)               --------->ANAC58  --------->MYB46(3)--------->DEAR3(1)       ------>NtERF2 --ANAC55(2)           --------->MYB46(3)<---------PCF5  <---------At4g35610--------->ANAC58       -- >HVH21 --------->ANAC58    <---------ZAT18--------->MYB46(3)--------->ATERF1(1)         <---------ALFIN1 ------GLK1(1)       <---------ARR14(2) --------->LBD16  --------->At4g35610--------->ANAC58       -- --ANAC46            --------->ARR14(2) <---------SPL7<------NtERF2--------->MYB46(3)  ------>NtERF2- >TGA1  --------->ANAC58   --------->DEAR3(1)  <---------ALFIN1--------->ABI4(1)----------->HVH21  --   aacctcgaacgagcaaggagtcggaaccagcgcgcctcttgccggaccaccagctcggcagacgacgcccccaccagctcgcccgacgatgccacctcta  6725000                                                               --------->ZAT2                                                         <-----------HVH21                                                        ======================RAV                                                        <-----------RAV1(1)                                                        ------>ZmHOX2a(1)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <---------ARR14(2)                                                    --------->ARR14(2)                                     <---------ALFIN1 ----------->RAV1(2)                                 <-----------HVH21 --------->At4g35610  <---------RAP2.6(3)                                <-----------RAV1(1)<---------At4g35610  --------->ORA47(1)                        --------->LBD16            <---------ZAT2       ------>NtERF2             <---------ALFIN1   ------>ZmHOX2a(1)<---------ALFIN1      <---------ETT(2)         <-----------HVH21  --------->ARR14(2)   <------NtERF2 <---------ZAT2  <------ZmHOX2a(1)        <-----------RAV1(1) <---------ARR14(2)  --------->LBD16<---------At4g35610        ------>ZmHOX2a(1)<------NtERF2------->TEIL --------->ZAT2      --------->DEAR3(1)    --------->ARR14(2) --------->RAP2.3(2)     --------->ANAC46--------->At4g35610    <---------ARR14(2) ----------->RAV1(1)     --------->DEAR3(1)     --------->DEAR3(2)   --------->GLK1(1)   --------->RAP2.6(2)     --------->RAP2.6(2)  ------>ZmHOX2a(1)               - <------NtERF2------->TEIL --------->GLK1(1)   --------->RAP2.3(2)--------->At4g35610             <-- ------->DEAR3(1)      --------->DEAR3(1)     --------->RAP2.3(1) ----------->RAV1(2)            ==== ------->RAP2.6(2)    --------->RAP2.3(1)     <xxxxxxxxxxxxxxxxsmallRNA(s) --------->TOE1(2)     <--- -------->LBD16      <---------At4g35610     --------->At4g35610--------->ARR14(2)               ==== ------->ANAC46      --------->At4g35610     <---------At4g35610<---------ARR14(2)         <xxxxxxxxx   gccgcagttcctgtcgcacctccagccgcagttcctgtcgcacctccagccgcagctcctgtcgcagctcctgccgacctaggagagataactccacgag  6725100                                     ------>MYB46(1)                                   --------->DREB2C(2)                                   ------->GAMYB                                                  ---                                  --------->DEAR3(2)                                           ======                                <---------WRKY18(1)                                            <-----                         <----------DOF2                                                      <------                        --------->HSFB2a(1)                                                   -------                        ------>ZmHOX2a(2)                                                 <------NtERF2                        =================================HOX2a_HOX2a                     <---------RAP2.6(3)                        =============HOX2a_HOX2a                                         ------>NtERF2                       ==================================HOX2a_HOX2a                    --------->DEAR3(1)                       <------ZmHOX2a(2)                    <---------HSFB2a(1)         --------->ATERF1(2)                       ==============HOX2a_HOX2a          <---------ARR11(3)            --------->RAP2.6(2)   ------>MYB46(1)    <---------ARR11(3)                  --------->ARR11(3)            <---------ATERF1(2)   ------>MYB83       <---------ARR14(2)                --------->ANAC58               --------->ATERF1(1) -------->MYB46(3)    --------->ARR11(3)                --------->ANAC58               --------->RAP2.3(1) -------ARR14(2)      --------->ARR14(2)            --------->ANAC58              <---------MYB46(3) =============================HOX2a_HOX2a           --------->ANAC46        --------->ANAC46<-------- ---ZmHOX2a(1)    <---------At4g35610------>MYB83   --------->ANAC58--------->ANAC58   <---------RAP2.6(2) ==============================HOX2a_HOX2a        <------ZmHOX2a(1) --------->ANAC58  <---------ATERF1(1) xxxxxxxxxxxxsmallRNA(se3)    ------>ZmHOX2a(1)  --------->ANAC46<---------SPL7   --------->MYB52(2)   gaaccaatctcgacgaagtcatccgatctttcctcgaccgactcgacttacaggacgcaagaacttccgaacgcatcaacgcgatagttgccgcccagga  6725200                                          --------->ANAC58                                          --------->ANAC58                                          --------->ANAC46                                         <---------LBD16                                     <---------ZAT2                 --------->ANAC58    <---------At4g35610               <xxxxxxxxxxxxxxxxsmallRNA(i)                    ----------->HVH21              ========================HOX2a_HOX2a     <---------ZAT2                    --------->GLK1(1)     <---------TOE1(2)               --------->At4g35610       ----------->TGA1       --------->ZAT14 <------NtERF2<------ZmHOX2a(2)      --------->ZAT2   --------->ZAT2                  <---------ZAT18 ------>ATERF1(1)--------->ANAC58 --------->LBD16     <---------At4g35610       --------->DEAR3(1) ====================HOX2a_HOX2a  <---------At4g35610 --------->At4g35610     ------>NtERF2 -ZmHOX2a(1) --------->AGP1      --------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(i) ----------->RAV1(1) ---ZAT2     --------->ARR14(2) <---------LBD16  --------->ETT(2)            --------->ANAC46     --- -->ZAT2--------->GLK1(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)  ---------->CDC5     --------->ANAC58  <----- ---RAV1(2)  <---------ARR14(2)------>ZmHOX2a(1) <---------ETT(2)            --------->ANAC58 <------   ggcctcgcagaatcagatcgagcaactccagtcctccgcagctcgcgcaagtcgacagctcagcgatgacgaaacaatcccgccccagcgaactccagtc  6725300                                                                                                    -                                                                                               ------                                                                                               ------                  --------->ANAC58                                                           --------                  --------->ANAC46                                                           ------->GAMYB               --------->DEAR3(1)                                                            --------       ------>ZmHOX2a(2)                      <------MYB46(1)                                --------      <------ZmHOX2a(2)                       <------MYB83                               --------->MYB46(3)     --------->ARR11(3)                       <---------ANAC58                        ----------->HVH21     <---------ARR14(2)      <xxxxxxxxxxxxxxxxsmallRNA(i)                           ----------->GT1 -     <---------ARR11(3)    <---------ANAC58  --------->MYB55(2)                   --------->SPL7   --     --------->ARR14(2)    <---------ANAC58  <---------MYB46(3)                  --------->ARR14(2)--   ----------->ARR10 ----------->RAV1(1)   <---------MYB52(1)<---------ZAT14    <---------SPL7-------   <---------HSFB2a(1)  ------->GAMYB     <-------GAMYB      --------->ZAT14   --------->DEAR3(1)<--- ---------->DOF2  --------->ANAC58        --------------------->WRI1          --------->ORA47(2) ---- ------>AtLEC2--------->MYB46(3)         <---------MYB46(3)  --------->ZAT18  <------NtERF2 --------- ----ATHB12   --------->DEAR3(2) ------>NtERF2<---------ANAC58    ----------->GT1<---------ARR14(2)-- -----HVH21 --------->MYB52(1)<---------ATERF1(1)<-------TEIL<---------ZAT18<----------ID1  ---------   atggaaagatcggcaaaccgacgcaacaggcctgcctccatcgtcgttgggtccatcgacgagcacactcgtgaaaatgcgccgaaccgtgacaaccgac  6725400  Previous    Next  AGI:  At2g15410.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.1e-217 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 6724860    to: 6730601    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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