Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->YAB1    <---------ICU4                                        <---------AHL20(2)    --------->YAB1       -------->HAHB4                                    <---------YAB1    <---------ICU4       --------->ATHB12                                 --------->AHL20(2)---------    -------->HAHB4       --------->YAB1                                   <---------AHL20(2)<--------   --------->ICU4       <---------YAB1                                --------------->AGL15<---------AHL20(2) --------->YAB1         --------->ICU4                                <---------------AGL15--------->AHL20(2) <--------HAHB4       --------->YAB1                                 <---------YAB1  ----------->GT1 <---------ICU4       <---------ICU4                            <---------ICU4 --------->AHL20(1) <-- -------->ICU4 --------->At4g35610                             --------->ICU4  --------->AHL20(2) <-- -->At4g35610  <---------LBD16                               --------->ANAC55(2)     <---------ANAC55(2) ---LBD16   ---------->DOF2<---------YAB1                    --------->ANAC46 --------->AHL20(2) ---- >DOF2<---------YAB1 --------->ICU4              --------->ANAC46  <-----------GT1--------->ICU4 <---   gaataattatgaaaataagcggaataatgatgagtacaacttgtacattgtccgaaaccattcacataattaccattaaaattaattatgtaaaaaaatt  6719600        --------->YAB1    <---------YAB1  ----------->GT1                                                     <----------DOF2  --------->YAB1                                                   <---------YAB1 >AHL20(2)                                                       <---------ICU4 -AHL20(2)                                                      <---------YAB1 -------YAB1                             --------->ICU4      <---------YAB1 -------AHL20(2)                       ---------->DOF2      <---------At5g28300      ------->TEIL   < ----->AHL20(2)                       <---------AHL20(2)   <-----------GT1   ------->TEIL  <--------- ------AHL20(2)--------->YAB1  --------->ZAT6     <----------ID1--------->ICU4--------->MYB46(3)-----   ttaattgtaattagaaagaataattttggaaaaacactatataaagattaaaacaacaaatttaccattattctttatgaaccaatgcatttttaatcct  6719700                                                                                             <-------                                                                                           <---------ANAC55(2)                                                                                           --------->ANAC55(2)                                                                                        <---------YAB1                                                                                      <---------ICU4                                                                                      --------->YAB1                                                                                     <---------YAB1                                                                                     --------->ICU4                                                                                   -------->ATHB1                                                                                   <---------ICU4                                                                                   --------->YAB1           <---------AHL20(2)                                                     --------->ICU4     <----------DOF2                                                              <---------YAB1   --------------->AGL15         <---------ZAT6              --------->AHL20(2)   --------->AHL20(1)   ==========================================================================================MADS_MADS -----------GT1                  ----------->GT1          <----------DOF2         --------->AHL20(2) --GT1 --------->AHL20(2)  --------->ANAC46     <---------GLK1(1)                 <---------AHL20(2) ->ZmHOX2a(1)<---------TOE2(3) <---------At5g28300    <---------GLK1(2)      --------------->AGL15   ttttactctttatataatgtttttaatccaagttactgttaaaaatatggaatttcgattctttttaatatttgtatttccaaaattattattatgtaat  6719800                                         --------->ATHB51                                         --------->ATHB12               ---------->DOF2          <---------YAB1        --------->ICU4      <<<<<<<<<<<<<<<<<LFY                  >>>>>>>>>>>>>>>>>LFY   --------->AHL20(2)    --------->YAB1 --------->ICU4           --------->GLK1(2)   --------->YAB1      --------->AHL20(2)<---------ICU4     ----------->GT1        <-----------GT1 --AHL20(2) --------->AHL20(2)    <---------MYB46(3)<---------TOE2(3)     --------->ETT(2)     <-----   tcaaattataaagattaaaaagtcttaaaataacattgggtcattatttgaattgatgtaaacagaaaatccattgtagacattttgaccattcccaata  6719900                                                                                         <-----------GT1                                                                                     <----------DOF2                                                                                     <---------DAG2    <---------YAB1                             --------->ARR14(2)                   <---------DAG2 <---------MYB52(1)             ---------->DOF2<---------ARR14(2)       --------->ARR11(3) ----ATHB12                --------->ZAT14<-----------------AGL1  <---------YAB1 <---------CCA1(2)   actgttatgagaagcctgaaaatgcccagtaaacaaaagaataggcccatataggcccaacttaaactactatagttcttcttatacctttttccactct  6720000                                   --------->LBD16                                   ------>NtERF2                  <<<<<<<<<SARD1  <---------DEAR3(1)                  <<<<<<<<<CBP60g<---------LBD16      <---------ICU4                  *TSS     <<<<<<<<<TBF1          --------->DAG2              <-----------HVH21    <----------DOF2     <<<<<<<<<TBF1            ---------->DOF2        --------->LBD16      <-------   cactcactttgctctctccaaatttcttcttcttctccggcgaagaaatcgaaaagtcattaccctaagagtcccagagtcgtcagaaggaacagctttt  6720100                                                   ---------->DOF2                                            <---------MYB52(1)                                           --------->LBD16                                          <---------ANAC58                                          <---------ANAC55(1)                                          --------->ANAC55(2)                       <---------GLK1(2)  <---------ANAC55(2)                     <---------ATHB12     <---------ANAC58                -------->P                <---------ANAC46                ------>MYB83            --------->CCA1(2)                ------>MYB46(1)         <------ZmHOX2a(2)               --------->MYB55(1)      --------->ARR11(3)              --------->MYB46(3)       <---------ARR11(3)              <---------MYB55(2)       <---------ARR14(2)              <---------MYB111(2)      --------->ARR14(2)                             --------->TOE2(2)              <---------MYB46(2)      <---------GLK1(1)        ------>NtERF2          --------->DEAR3(1)              <---------MYB111(1)    ----------->ARR10        --------->ANAC46       --------->MYB46(3)             --------->At4g35610 --------->At5g28300          --------->ANAC58       --------->DEAR3(2)             <---------At4g35610------->GAMYB  <---------At4g35610           <-------TEIL     <---------DEAR3(1)--------->ARR14(2)<-------TEIL <---------ICU4      --------->ZAT2 <---------O2    <---------ORA47(1)--------->HSFB2a(1)------>ZmHOX2a(2)    --------->ANAC58<---------ANAC46 ---DOF2 <-----------HVH21   --------->MYB52(1)--------->At4g35610        <---------ZAT2 --------->O2   gaaatggacggtgtcacctaccaaagattcccaacggtgaagatccgtgagcttaaagatgactacgccaagttcgagcttcgtgaaaccgacgtttcaa  6720200                         ------>ZmHOX2a(2)                        <---------GLK1(1)                        --------->GLK1(1)                       <---------ARR11(3)                       --------->ARR11(3)                <---------ANAC58                <---------ANAC46                --------->ANAC55(2)                <---------ANAC58                <---------ANAC55(2)            --------->ANAC58              <---------ANAC46                 --------->ANAC58             <---------MYB52(1)       ------>NtERF2            <-----------HVH21        --------->ANAC46                           --------->ZAT14  ----           --------->ANAC46  --------->LBD16  --------->WOX13(1)             --------------------->WRI1     ------->GAMYB    <---------ICU4 <---------ALFIN1                        ------>ZmHOX2a(1)  <---- <---------WRKY38(1)  --------->YAB1--------->MYB46(3)             ----------->GT1       ------->GAMYB <---------WRKY12    --------->ICU4<-----------------AGL1         <---------TOE2(3)     --------->MYB46(3)   tggccaacgctctccgtcgcgtaatgatctccgaagtccccaccatggcaatccatctcgtcaaaatcgaggttaattcctctgttctcaacgacgagtt  6720300                                                                                                    <                                                                                                    -                                      <---------ZAT18                                           <----                                      --------->ZAT18                   --------->ICU4          <----                                     <---------ANAC58            <---------GLK1(2)              <----                                     <---------ANAC58          --------->ICU4              <---------ICU4       --------->MYB46(3)        <---------ANAC58      <---------ARR14(2)                 <---------YAB1    <---------WRKY38(1)          <---------ANAC58      --------->ARR14(2)            <---------At4g35610 ----->ATHB12                   --------->STY1(2)      --------->GLK1(2)<---------YAB1    ------->TEIL ---TEIL                   --------->ZAT6    --------->YAB1    <---------YAB1        --------->At4g35610   cattgctcaacgacttagtctcatccctctcactagcgagcgtgctatgagcatgcggttctgtcaagattgtgaagattgtaatggagatgaacattgc  6720400                                                                                       ==============                                                                                       ------>ZmHOX2a(2)                                                                                     --------->ARR14(2)                                                                                     <---------ARR14(2)                                                                                 <---------At4g35610                                                                            <---------ZAT14                                                                        ------>ZmHOX2a(2)                                                                        =============================                                                                        ========================HOX2a_HOX2a          <---------MYB52(1)                                           --------->GLK1(1)         <-------GAMYB                                                 ==============================    <---------ZAT14                                                    =========================HOX2a_HOX2a    --------->ZAT14                                                    <---------GLK1(1)    <---------At4g35610                                                <------ZmHOX2a(2) ---------ARR14(2)                             ------>MYB46(1)        <---------ARR11(3) -------->ARR14(2)        <---------ZAT6       ------>MYB83           <---------ARR14(2) -----ANAC46          <---------MYB52(1)     --------->AtMYB61        --------->ARR14(2)      <------ -----ANAC58    --------->ARR14(2)           <---------MYB59          --------->ARR11(3) ------>ZmHOX2a(1) -----ANAC58    <---------ARR14(2)    <-----------GT1  <---------ARR11(3)   --------->ZAT14 <--------   gagttctgctctgttgagtttccccttagtgctaagtgtgttactgaccaaaccctagatgttactagtagggatctctacagtgctgatcctactgtta  6720500  Previous    Next  AGI:  At2g15400.1    Description:  RBP36B (RNA polymerase II 36 kDa polypeptide B); DNA binding / DNA-directed RNA polymerase. Identical to DNA-directed RNA polymerase II subunit RPB3-B (RPB36B) [Arabidopsis Thaliana] (GB:Q39212;GB:Q9SJP1); similar to RBP36A (RNA polymerase II 36 kDa polypeptide A), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G15430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60923.1); contains InterPro domain DNA-directed RNA polymerase, insert; (InterPro:IPR011262); contains InterPro domain DNA-directed RNA polymerase, RpoA/D/Rpb3-type; (InterPro:IPR011263); contains InterPro domain DNA-directed RNA polymerase, Range:  from: 6720018    to: 6721668    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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