Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <-----------GT1     <-----------GT1  <---------ICU4                                                                           --------->YAB1 --------->ICU4                                                                        -------------- ---------AHL20(1)                                                                     <------------- ---------AHL20(2)                                    <---------AHL20(2)       <---------AHL20(1) ------->YAB1                                --------->TOE2(3)              --------->AHL20(2)      - -------YAB1                           <-------TEIL   --------->AHL20(2)   --------->AHL20(2)   ----- ---->YAB1 <----------DOF2          <---------At4g35610         --------->DAG2 --------->AHL20(2)   < ----AHL20(2)                       --------->At4g35610        ---------->DOF2 <---------AHL20(2)<--- --->AHL20(2)                 <---------AHL20(2)--------->AHL20(2)  ----------->GT1    ==============   ataatatttatctctttattcaactcttggatttttttagctacataccataaaatataaatataaaaagttgaaaaataaaaaatttcccaaaaatact  6637200      --------->AHL20(2)                                           --------->AtLEC2      <---------AHL20(2)                                           --------->ANAC58      <---------YAB1                                               --------->ANAC58               ---     --------->AHL20(1)                                 <---------------AGL15                     <--     <---------AHL20(1)                                 --------------->AGL15             -----------     --------->AHL20(2)                                ----------------->AGL2             <------MYB46(1)    --------->YAB1                                     <-----------------AGL2             <------MYB83 <---------AHL20(2)                                    <-----------------AGL3            <----------- ->AGL15                                              <<<<<<<<<GATA-1                    ------------ --AGL15                                --------->WOX13(1)       <---------ANAC58       <---------WOX13(1) -------->AHL20(2)                <------MYB46(1)    <-----------GT1                  --------->ATHB12 ---->ICU4                        <------MYB83     <---------AHL20(2)                <---------YAB1 ---------AHL20(2)      --------->TOE2(3)         --------->AHL20(2)         <----------DOF2      <-- ------ICU4  ---------->ID1--------->YAB1  --------->YAB1        <---------ANAC58  --------->CCA1(2) =======================================================================MADS_MADS<<<<<<<<<RAP2.2  ---   aattaaatataatttgttgtaatacacattaatagttggtgtcaattacaaattttatctatatttggcatgcaattgtctttagatatgattggtacaa  6637300        <-----------GT1                                                                         -----       <-----------GT1                                                                        -------   <---------AHL20(2)                                                                        <------- <---------AHL20(2)  <---------YAB1                             <-----------GT1              -------- <---------YAB1     --------->ARR11(3)                    <---------RVE1(1)                  <------- ------>AHL20(1)    <---------ARR11(3)                    <---------CCA1(1)                  -------- -------AHL20(1)   --------->YAB1                        --------->ARR11(3)                 <-------- >GT1 <---------AHL20(2)    --------->bZIP60(1)          --------->AHL20(1)                 --------- ----AtSPL8    <---------AHL20(2)  --------->ATHB12      <---------ARR11(3)                 <-------- --->AtSPL8<----------DOF2  <---------bZIP60(1)--------->ICU4 <---------AHL20(2)       --------->ANAC55(2) -------ARR11(3) <---------TOE2(3)<---------ATHB12       <---------AHL20(1)            <---------ANAC55(2) ------>AHL20(2)--------->YAB1  --------->WOX13(1)   ---------->DOF2                 <-----------GT1   aatattattttatctttttaatgatatttgacatcagtcattagatgtaattagcaaaagatattttaactattttagttctatttgttacataatcatt  6637400                                                   <------------CBF                                                  --------->ATHB12                                                  --------->ATHB51     --------->ICU4                              <---------YAB1     <---------ATHB51                          --------------->AGL15 ------------>CBF                              <---------------AGL15 ---->AHL20(2)                                <-----------------AGL1 -->TOE2(3)                                   ----------------->AGL2            <---------CCA1(2) -HAHB4                                       <-----------------AGL2          --------->CCA1(2) ->ATHB12                                     <-----------------AGL3   <-----------GT1 --ICU4           --------->ATHB12            ======================================================= ->YAB1           <---------ICU4           --------->ZAT14      --------->AHL20(2)              ----- -YAB1--------->YAB1                       <---------ZAT14     --------->AHL20(2)--------->ARR11(3) < >ICU4<---------ICU4                      <----------DOF2      <---------AHL20(2)<---------ARR11(3) < -ATHB12<---------YAB1                    <---------DAG2     --------->YAB1  <---------ARR11(3)<-----   aaatacaattatgacattagtcattagatagaaatagagagacactttactataattggccaaaaataattttaaactagatatatcttatattactatg  6637500                                         <---------RVE1(1)                                         <---------CCA1(1)                                        --------->ARR11(3)                                    --------->ANAC58                         <---------------AGL15                         --------------->AGL15                        <-----------------AGL2                              <---------ARR11(3)                        <-----------------AGL3                              --------->ARR11(3)  <------------CBF      ----------------->AGL2                      <---------AHL20(2) --------->ATHB12      --------->At4g35610                          --------->AHL20(2) ========================================MADS_MADS              <----------DOF2        ---------->DOF2 ---->YAB1             <---------At4g35610          <---------ARR11(3)   <---------AHL20(2) ---------YAB1      <---------MYB52(1)  <---------ARR11(3)  --------->MYB46(3)  -------->P         -- ---------AHL20(2)<---------MYB46(3)--------->ANAC58--------->ARR11(3)   --------->AHL20(2)       --- ----YAB1   --------->YAB1   <------------CBF ----------->GT1   <---------DAG2 <-----------GT1<------   atataattggtccataatagttgttagctaaaattggcacgagatatttagtaatatctctaacaactttttaaataaaatctaccagacaaagtcgtta  6637600                                             --------->YAB1                                             <---------ICU4                                             <--------ATHB1                                             -------->HAHB4                                             <--------HAHB4                                             --------->ATHB51                                     <---------WOX13(1)                                   --------->ATHB12                                   <---------AHL20(2)                                  --------->AHL20(2)                         --------->MYB52(1) <---------YAB1           ------>NtERF2--------->RVE1(1)   --------->ICU4          <---------ANAC58        <---------AHL20(2)          <---------ANAC46       <---------YAB1                      ---------->DOF2          <---------ANAC58    <---------MYB52(1)                  <------NtERF2 ------->CCA1(2)     <---------AHL20(2)     <---------ATHB51 --------->DAG2 ------>ARR11(3)    --------->AHL20(2) ----------->GT1     ---------->DOF2    ---------->DOF2 ---MYB52(1)<------NtERF2------------>MYB.PH3(1)<-----------GT1 --------->ALFIN1     ----------->GT1   gatatagaaatggcgcgaactattaaatatcggttattaattggtaataattacatttttcaaaaggtggcaaaagagtctaaagaagagtaaaattttg  6637700                                                                                <---------LBD16                                                                                <-----------RAV1(2)                                                                  <---------AHL20(1)                                                                  <---------ARR11(3)                 <-----------GT1                                  --------->AHL20(2)               <---------AHL20(2)                                 <---------AHL20(2)              <--     --------->MYB46(3)                                           --------->ARR11(3)          -------    --------->ANAC58                      ----------->GT1         --------->AHL20(1)          -------    --------->ANAC58                <-------TEIL                --------->GLK1(2)  <------ZmHOX2a(1)   agtagcacccatcttatataaactatccattttagagtttcatagagtcaataaacaagtagagagaatatattctaagagttcaggaagtagcaatgtt  6637800                        ------>ZmHOX2a(2)                 <----------DOF2                <---------ANAC58            --------->CCA1(2)            --------->ARR14(1)           --------->ARR11(1)           --------->ARR14(2)                                                                       <           <---------ARR11(3)     --------->ARR14(2)                                                -           --------->ARR11(3)  --------->ALFIN1                                        --------->YAB1 -------TOE2(3) <---------ANAC58  <---------ARR14(2)                ------->TEIL     --------->GLK1(2) -->YAB1   <---------GLK1(2)  <-------MYC3                       --------->WRKY12    <---------ARR14(2) -->TOE2(3)<---------ARR14(2) ------->MYC3     ------->TEIL    --------->TOE2(3)    <---------GLK1(2)   aatgaaggcaaaagatttgcttttgatctcaacgtggaacctgttgatgaaactttggacctcaacgttgaacctgttgatgaagagaatcgtgatgctc  6637900                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                          <---------GLK1(2)                                                       <---------YAB1                 <---------ANAC58                                                       --------->ICU4                 <---------ANAC58                                 ------->TEIL        --------->YAB1                   --------->ANAC55(2)                    <---------ICU4                   <---------ICU4 --------->YAB1    <---------ANAC55(2)    ------>ZmHOX2a(1) <---------YAB1           --------->YAB1      <---------ATHB12  <-------TEIL <-- ---------ARR14(2)  --------->YAB1   <-----------RAV1(1) <---------GLK1(2)          --------->GLK1(2) -------->ARR14(2)--------->GLK1(2)--------->YAB1  --------->GLK1(2)<---------ICU4 <---------GLK1(2)   tgaatcctgttgatgaagagaatcatgactctatgaatcatgttgctaaacagaatcatgattcttctaatcatgttgatcaagagattcgtgattctca  6638000                                                                                           --------->WOX13(1)                                                                                          <---------WRKY12                                                      <---------ANAC58                    <---------WRKY38(1)                                                      <---------bZIP60(2)                --------->WRKY18(1)                               ---------->DOF2        <---------ANAC46                <---------AtMYB61                       <---------GLK1(2)              <---------ANAC58              <----------DOF2  <---------YAB1     <---------YAB1                ----------->HVH21             <---------PCF2 ----------ARR10     --------->ICU4               <-----------HVH21         <---------ANAC58 ------->GLK1(2)   --------->YAB1                 --------->At5g28300       <---------ANAC46 --------ARR11(3)  <---------ICU4           --------->ARR11(3)              <---------ANAC58        - -------GLK1(2)  --------->GLK1(2)       <---------GLK1(2)  <---------GLK1(1) --------->ALFIN1-------   gaatcttattgatgaagagaatcatgattctccaaaagactcagattatctcggtgacttggatttgtgttcgatttgtcgtggggctttggtcaatgag  6638100  Previous    Next  AGI:  At2g15260.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G05545.1); similar to VIP2 protein [Avena fatua] (GB:CAB75506.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6637610    to: 6641090    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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