Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <---------TOE2(3)                                         <---------TOE1(3)                        <---------YAB1                               <-----------GT1                                 <XXXXXXXXXXXXXXXXXXXXMIR2112-5P                            <---------REM1(1)                                 <---------WOX13(1)                            ----------->GT1       ---------->ID1     --------->At5g28300 --------->ARR11(3)       <-------GAMYB ---------->DOF2             ----------->GT1--------->ATHB12 <---------ARR11(3)      <-----------RAV1(1)     <-----------GT1   --------->ZAT6<---------TOE2(3) <- --->DOF2        <-----------GT1     --------->YAB1              ----------->RAV1(1)      <XXXXXXXXXX   gaagatttcaaatgccgattaacttctctgttgtaacaattttaaagtttttttcgttttgaaacttcaacagtaaatagattgatgtttgggtttgtgt  6606000                --------->ANAC55(2)             ------>ZmHOX2a(1)                  <------MYB83           ------>ZmHOX2a(2)                    <---------MYB46(3)          <------ZmHOX2a(2)                     <------MYB46(1)         <---------ARR11(3)                    <---------AtMYB61         --------->ARR14(2)                   <--------P                                           --         --------->AGP1                <---------ANAC46  --------->DAG2                      <-------         <---------ARR14(2)           --------->ATHB12  ---------->DOF2             --------->At4g35610         --------->ARR11(3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                <---------DEAR3(1)         <---------GLK1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------At4g35610   <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   --------->At4g35610 --------AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxx>smallRNA(s) XXXXXXXXXXMIR403     <---------AHL20(2)<---------WOX13(1)            <-----------GT1<---------DEAR3(1)   tttaatttatagatcctcacttaatttatgggttaccagttgattggagttggtttggaaaagttttttttgtttctattttcagcggctgtgttctttg  6606100      <---------AHL20(2)      --------->AHL20(2)                         <------ZmHOX2a(1)  ----------->GT1                            ---------->DOF2  --------->ICU4 -------->DOF2                   --------->MYB52(1)           <---------YAB1          ---------->DOF2 ---DOF2                 ----------->GT1<----------DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   aaaaagattaaaattttgtttttggaatggtttcaaaacggtctttaaaaaggattatggagtaatgactgtgttttacaagggtttttaaagtcttaaa  6606200                                                   <-----------GT1                                               <----------DOF2                                            <---------ARR11(3)                                            --------->ARR11(3)       <---------YAB1            <----------DOF2              <---------TOE2(3)     --------->ICU4                 <------        <---------ATHB12                ---------->DOF2 <---------ANAC46   <---------YAB1<---------YAB1   acgacttgcaatgactttgaaaaatagttttacgagggtttttaaagttctttaaacgacttgtaatgactatgtttatgtttcgaaaactataaatgca  6606300                                                <---------AHL20(2)                                               --------->AHL20(1)                                               <---------AHL20(1)    --------->AHL20(2)     *TSS                                               <---------AHL20(2)    <---------AHL20(2)   <----------              --------->ICU4                   --------->AHL20(2) ------->TEIL           <---------YAB1 -TEIL      --------->YAB1              ----------->GT1       <---------TOE2(3)      <---------------   taatagatttacaaaaatgatttttaaaactatttcaaaactgtgttaatttaatgactgtgttaatgtatttaatcaggttttgagaaatatgagtaca  6606400                                     <---------At4g35610                                     --------->At4g35610                                     <------NtERF2                                     <xxxxxxxxxxxxxxxxsmallRNA(i)             ------>ZmHOX2a(1)                             ------>MYB46(1)                                 --------->TOE2(3)                             -------->P       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->GLK1(2)           ------>MYB83   ----------->GT1              --------->YAB1 -----AtSPL8           xxxxxxxxxxxxxxxx>smallRNA(i)                     <-------TEIL               >> ------WRI1     ---------->DOF2  --------->ANAC46                ---------->DOF2                <----   aagaaactgttcttccctaaaagactgttccaaccaggcagcgaagtagataatattacaagggtatcaaagcattcatccttcaaaattgtctcgactg  6606500                                                                --------->ARR14(2)       <----------DOF2                     <---------GLK1(2)    <---------GLK1(1)                <---  ---------->DOF2              --------->TOE2(3)       ------>ZmHOX2a(1)                         <xxx <------ZmHOX2a(1)   <---------ZAT6      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------- >>>>>GRF7---------->DOF2   <---------ALFIN1         ----------------->AGL1                 --------- -------HVH21   xxxxxxxxxxxxxxxx>smallRNA(i)         <-----------------AGL1   ------->TEIL  ---------   tcaggaaagctttagagccgatagagttcaacacattaatggacacattcttgggtcctatagtggaattcgctaaaatggacttagcattttcaagcca  6606600                                       ----------->TGA1       <---------ICU4                --------->YAB1      <---------YAB1               ------>MYB83    --------->YAB1                 ------>MYB46(1) ------CCA1(2)                   ------->GAMYB                                 --------->GLK1(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----------->RAV1(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        -- >ANAC58                        --------->MYB46(3)  <---------ANAC46          <---------GLK1(2)   <-- >ANAC46                       -------->P        <---------TOE2(3)   ------->TEIL              <----- >ANAC58         --------->LBD16<---------MYB55(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------   tatcgttcatcatttactccagagaagaatactaaccaacaatgacgaattgtggtttgtatttgctgatcaacctatgcgattctccctgagagaattt  6606700                                                                            ----------->GT1                                                                            <---------MYB46(3)                                                                           <---------ANAC46    <-----                                     --------->At4g35610                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <---------HSFB2a(2)                  --------->DAG2  --------->ARR11(3) ------->YAB1                   --------->HSFB2a(2)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------YAB1                   <---------LBD16                      ---------->DOF2  <---------ARR11(3) ----AHL20(2)      <---------ATHB12  <---------At4g35610       ---------->DOF2   ---------->DOF2 ->GLK1(2)<------ZmHOX2a(1)  ------->TEIL               ---------->DOF2 --------->ALFIN1  --------->YAB1   atcataacaacaggacttccaatggatgatgcatcgggaagcagtccaaatgtgaagagaaagaagaaagaaaagtggtggataaaagataatcagactt  6606800                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)              --------->AHL20(2)                                                   --------->AGP1              --------->HSFB2a(2)                                                   --------->ARR11(3)          <---------HSFB2a(2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <---------ANAC58                     <---------ANAC46              <---------AGP1         <---------ANAC58         ----------->GT1                   <----------DOF2        --------->HSFB2a(2)       --------->At4g35610       --------->ANAC58  <---------ARR11(3)  --------->DAG2    ---------->DOF2  --------->ALFIN1      <---------DAG2         <---------HSFB2a(2)             <-- -----DOF2    ---------->DOF2    --------->ANAC58 <---------CCA1(2)   ---------->DOF2      ------>NtERF2   tgaagagaaagcagaaaaaagatgtgtggattaacaaggaaatgacttttttagatcttacatatgttttggaaaagcgttccaaaaaaatgcagccaga  6606900  Previous    Next  AGI:  At2g15200.1    Description:  transposable element gene. pseudogene, hypothetical protein, similar to At2g04970, At1g32830, At2g14140, At3g30450, At4g03990, At5g34895, At3g47270, At2g02200 Range:  from: 6606392    to: 6610324    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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