Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------------AGL15                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               --------------->AGL15                                              <-----------------AGL2                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              ----------------->AG                                              ----------------->AGL2    <----------DOF2                           <-----------------AGL1                  --------->ARR11(3) -------ANAC58                                ----------------->AGL1                  <---------ARR11(3) -------ANAC58                             <---------CCA1(2)                          <---------ARR14(2) -------ANAC46                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->ARR14(2) ----DOF2                             <---------At4g35610                <----------DOF2 --ANAC58               xxxxxxxxxxxxxxxx>smallRNA(i)           <---------TOE2(3)   ----------->GT1 --ANAC58         ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ---------->DOF2   gtgtgtctttaaaattctacaaaagagggttttgggattgagcttatatccaaaatgggcattttaagaaagtttctttcaaaagaggtatcttctacag  6556100                                                                    <---------AHL20(1)                                                          ----------->GT1                                                          <---------ANAC58                                                          <---------ANAC58   >>>>>>>>>RAP2.2                                                          <---------ANAC46<---------CCA1(2)    ------                                                   <-----------HVH21--------->AHL20(1)        <------                                                <---------ANAC58  <---------AHL20(1)         <-------                             --------->GLK1(2)  <---------ANAC58  --------->AHL20(1)        ---------               xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <--------       --------->ZAT6       <---------GLK1(2)<----------DOF2     --------->AHL20(2)        --------->ICU4 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ICU4 ---------->DOF2    <---------AHL20(2)<---------ATHB12   tagaattcaacagtagcaacttattgactcgattctgacaattttgactttggtgtcaaagcgtgaaatatatattatatctaaaacttctcaattatca  6556200 --->ZAT6              --------->TOE2(3)                                               xxxxxxxxxxxxxx ---YAB1              <---------ICU4                                                 <---------AHL20(2) ----GT1  <---------ZAT14                                                     --------->ZAT6 >YAB1    --------->ZAT14 ----------->GT1                                    <---------At5g28300  <-- -ICU4<---------------AtSPL8           <-----------GT1                      <-----------GT1       <--   gtatggaaatggtacacagtctaaacattagtaaaaactatatactagtttgggatttagaaacccaaacaattcaatttacagtatgtaaatgttagat  6556300                                                                   --------->ANAC58                                                                   --------->ANAC55(2)                                                                   --------->ANAC46                                                             ---------->DOF2                                                       ------>NtERF2                               xx                                                      --------->ANAC46                          -----                                                      --------->ANAC58                     xxxxxxxxxx                                                      --------->ANAC58                     <xxxxxxxxx                                                     --------->SPL7<---------ANAC55(2)  <---------ETT(1)                                                    <------ZmHOX2a(1)   --------->GLK1(2) xxxxxxxxxxx   --------->At4g35610                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxx   <---------At4g35610                     --------->ZAT14----------->GT1           --------->ARR14(2) xxxxxxxx>smallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <------------CBF<xxxxxxx ----MYB46(1)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC58 <---------ARR14(2) ----MYB83            ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------YAB1xxxxxxxxxxxx   aggtgagatgagaaaatttgtgaacaaagagaattgcagtttcagtggagaagaggacgccagtaaatcacgaaattctgattgtggattccgacatcca  6556400                 ----------->GT1               --------->ALFIN1       <xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                          -------      <xxxxxxxxxxxxxxxsmallRNA(si3)                                                           -------      <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         ------>MYB46(1)      <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         -------      <xxxxxxxxxxxxxxxsmallRNA(le3)                                                           ------>MYB83      <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                   ------>NtERF2      <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <---------ETT(2)      <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                    ----------->HVH21      <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  --------->ATERF1(1)     <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                   ------>NtERF2 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                    --------->LBD16 ------->CBFxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  <---------ARR14(2) xxxxxx>smallRNA(s)                                       --------------->AGL15  <---------GLK1(1) xxxxxxxxxsmallRNA(le3)                          --------->YAB1                  --------->GLK1(1) xxxxxxxxxxxx>smallRNA(s2)                      <------ZmHOX2a(2)          <-----------HVH21--------- x>smallRNA(s)<------ZmHOX2a(1)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC46 xxxxxxxxxxxxxxxxsmallRNA(i2)                 ------->GAMYB            ------->GAMYB<---------LBD16 < xxxxxxxxxxx>smallRNA(i2)    <----------DOF2 --------->MYB46(3)*TSS   --------->MYB46(3)--------->DEAR3(1)   caatttggcgctagaaggaggggaattaagtcttttacttcagaacaacgatcaaaatcaccatgagtagcaacgacggtcagagttccggcgaccaagc  6556500                                                                       --------->bZIP60(1)                                                                       <---------O2                                                                       <---------TGA2(1)                                                                       --------->O2                                                                       <---------TGA1a                                                                       --------->TGA2(1)                                                                       --------->ANAC55(2)                                                                       <---------bZIP60(1)                                                                       <---------ANAC46                                                                       <---------ANAC55(2)                             ----------->RAV1(1)                       <---------ANAC58                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ANAC58                     <---------At4g35610                               --------->TGA1a                     <---------ZAT2                                   ----------->STF1                     --------->At4g35610                  xxxxxxxxxxxxxxxx>smallRNA(s)                     --------->ZAT2                 --------->DREB2C(2)<---------bZIP60(2)                 --------->ANAC46                   <---------ETT(1)----------->HVH21             ---                 --------->ANAC58                  --------->DEAR3(2)<---------TGA2(2)            --- -->ANAC58       --------->ANAC58       <---------HSFB2a(2) --------->ZAT2                  --------- -->ANAC46     ---------->DOF2          --------->HSFB2a(2) --------->At4g35610           <---------ANAC58 -->ANAC58------>NtERF2 --------->At4g35610      --------->MYB52(1) ----------->TGA1      <---------ANAC58 >AtMYB61--------->ANAC46   --------->REM1(1)   ----------->HVH21  <-----------HVH21     <-------TEIL ---------ALFIN1--------->WOX13(1)     <---------TOE1(1)----------->RAV1(1)        <XXXXXXXXXXXXXXXXX   ctccaccctcgacgacatcaagcagctgcttcaacagttgtccgagaagactgaccgacaacagcttgctgtgacgtctctctccaacaagttcgtgacc  6556600                                                                                --------->GLK1(1)                       --------->ANAC58                                  --------->SPL7--------->ANAC46                       --------->ANAC46                                <---------SPL7  --------->ANAC58                       --------->ANAC58                     <---------At4g35610 --------->ZAT2                     <---------ALFIN1                       --------->At4g35610 --------->At4g35610                    -------->P            <---------ICU4   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ANAC58                    <---------REM1(2)     --------->YAB1  ------>ZmHOX2a(2)     <---------ZAT2               ------->GAMYB             <---------ATHB12--------->RAP2.6(3)  <------NtERF2 --->MYB83    --------->MYB46(3)         --------->ICU4  <------ZmHOX2a(2)   --------->LBD16 --->MYB46(1)<---------At4g35610         <---------YAB1 <---------ARR14(2)  --------->ANAC46 -->HVH21--------->AtLEC2 ----------->RAV1(1)           --------->ARR14(2) <---------LBD16 XXXMIR417  --------->MYB52(1)     ------>NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxx   ttccaagagcaatgcaacggccaacacgcagcattggcgactaatcattctgaaatcagatcggctcacaacgcgtacgcggagctcgaacgcgactcaa  6556700                                                                   <------NtERF2                                                               ------>NtERF2                                                               --------->ABI4(1)                                                               <---------ATERF1(1)                                                               <-----------HVH21                                                              --------->ANAC46                                                              --------->ANAC58                                                   <------NtERF2  ------>NtERF2                                                   <---------At4g35610                                                   --------->ZAT2 --------->MYB52(1)                                                   <---------ZAT2--------->DEAR3(1)                                                   --------->At4g35610                                                 <-----------RAV1(2)                                           <---------At4g35610--------->DEAR3(1)                                           ----------->RAV1(2)--------->RAP2.6(2)                                           --------->At4g35610------->GAMYB              --------->At4g35610          ===================RAV<---------ALFIN1            --------->SPL7                --------->GLK1(2)   --------->ANAC58           <---------MYB52(1)           --------->HSFB2a(1)   --------->DEAR4(1)          <-----------TGA1              <---------HSFC1(2)    --------->DREB2C(2)          <-----------HVH21             --------->HSFC1(2)   --------->MYB46(3)         --------->DEAR3(1)             <---------HSFB2a(1) <---------ATERF1(1)                   ---        <------NtERF2                  --------->ANAC58    <---------ALFIN1                       <--       <---------ATERF1(1)             --------->ANAC58   <---------ZAT14                         ---     <---------ABI4(2)               <------ZmHOX2a(1)  --------->ANAC46                 <xxxxxxxxxxx     <---------ZAT18               --------->LBD16----------->RAV1(1)                 <xxxxxxxxxxxxxx     --------->ZAT18               <---------TOE1(2) <---------ZAT18                ----------->RAV1(1)   --------->ANAC46               <---------LBD16--------->ATERF1(2)               ----------->HVH21 xxxxxxx>smallRNA(le3)           <---------LBD16 <---------ATERF1(2)            <------NtERF2    <---   ttttcagggcaccgtcagcccgagcgtccaaaattcccaggaagcatctggccagcagactccaccgccaccggttgaagtcggagcgacatcgactcag  6556800                                                                   --------->ARR14(2)    ----------->HVH21                                              <---------ARR14(2)   <-----------HVH21                                          ------>NtERF2  ------>ZmHOX2a(1)                                          --------->ANAC58 ------>ARR14(2)                  <------NtERF2             --------->SPL7 -------ARR14(2)                 ------>NtERF2            <---------SPL7                        ----- ------>GLK1(2)                  --------->LBD16          ----------->HVH21       --------->ANAC58 xxxxxsmallRNA(s)       --------->ANAC58              <---------ZAT2  <---------ALFIN1          <---- xxxxxxxxsmallRNA(fl3)  --------->ANAC58   --------->ARR14(2)--------->ANAC46     --------->ANAC46 ------GLK1(2)       --------->ZAT2        <---------ARR14(2)--------->ANAC58     --------->ANAC58   aatcctgtcacctcgtcttcaccagcacgacttgccgcagtttcagatagggcgatagctcggacgccagttccacttgatcaaacgcagtcaattcgga  6556900                    ----------->RAV1(2)         --------->ANAC46                   <---------ARR14(2)           --------->ANAC58                   <-----------ARR10            --------->ANAC58       --------->ALFIN1                   --------->ARR14(2)      --------->WOX13(1)     --------->LBD16                   --------->GLK1(2)      <-------TEIL           <---------HSFB2a(2)               <------ZmHOX2a(2)     ---------->DOF2           ------>NtERF2                       xx       --------->TOE2(3)         --------->ANAC58            --------->At4g35610                =====       --------->TOE1(3)         --------->ANAC46           <---------ATERF1(1)                 ===== ---->ARR14(2)<---------ARR11(3) --------->ANAC58 <---------ZAT18--------->HSFB2a(2)            <---- -----ARR14(2)--------->ARR11(3)------->TEIL<-----------HVH21<---------At4g35610      <---------TOE2(3)   acttcaaaaccttcaagatcaaatctgggccatgaacgcaaaagtccatcaggccactacttcggctcccgaagtggagaaggttattgaggcaacgagg  6557000  Previous    Next  AGI:  At2g15100.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.0e-216 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 6556463    to: 6561412    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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